Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.1e-06 0.00041 21.1 0.8 14 43 50 76 42 77 0.85

2 7 0.076 15 6.5 0.5 19 43 83 104 79 105 0.78

3 7 0.087 17 6.3 0.2 15 43 111 136 106 137 0.81

4 7 0.47 92 3.9 0.4 19 43 143 164 141 167 0.80

5 7 0.019 3.8 8.4 1.0 6 43 166 202 161 203 0.72

6 7 0.19 37 5.2 1.3 19 43 209 230 207 240 0.75

7 7 8.6 1.7e+03 -0.1 4.4 17 43 263 286 234 287 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.1e-06	0.00041	21.1	0.8	14	43	50	76	42	77	0.85
2	7	0.076	15	6.5	0.5	19	43	83	104	79	105	0.78
3	7	0.087	17	6.3	0.2	15	43	111	136	106	137	0.81
4	7	0.47	92	3.9	0.4	19	43	143	164	141	167	0.80
5	7	0.019	3.8	8.4	1.0	6	43	166	202	161	203	0.72
6	7	0.19	37	5.2	1.3	19	43	209	230	207	240	0.75
7	7	8.6	1.7e+03	-0.1	4.4	17	43	263	286	234	287	0.72

Coding Sequence: ATGGAGATAGTTATTAAACGCGAACATGTTAATCCCGATAATTCGATAGCAGCTAAAAATATAACGGATGCCGACGGTTACGAAACTCAAAACGCAATCAAAGTCGTCGCGAACGAAGTGaagctgaaatttttttgcgatCTCGATGCGATTATCAACGCGTGTGAGCTGTGCGGCAAGAAATACTCGAGCACGGGCAATTTGATCAGGCACATCGAGTCGTTTCACTGCCGTTTCACCCACCTGTGCGACAAGTGCGGCAAGACGTTCTCGCAGAAAGTCACCCTCGAGACGCACATCGCTACGGTGCACAACAACGGGAACGACGCTACGAGCTACGCGTGCGCGACATGCGTCAAGAAATTTTCGAGCAAGAGCAGTCTCGAAAGGCACGTCGGGTCGTTGCATCGGGGTGTCGGCCACTCGTGCGACTCGTGCGAAAAGACGTTCACGAGAAGGCAATATCTCCAGAGCCACATTGATAAGGTGCACCGACATGGTGACCTATTGAAGGATGATCACAACGGCGTGAGATATCTGTGCGACGCCTGCGGAAGGATATTCACGCGCAAGGGTAATCTCAAGAATCACGTGGCTTCGGTGCACCACGGGATCGGCCACTCGTGCGACCTCTGCGAAAAAACGTTCACGAGAAATACCTATCTTCGAGACCACGTGGACGCGGTGCACAACGGGCTCAGTCACTTGTGCGACAGATGCGGCAAGAAATTTTCCAGCAGAGAGTATCTGAGGTGTCACATCGACGGGTCACACGAAGGTGTCGCGAATACCTGCGACGAGTGCGGAAAGACGTTCGCCACGAGGAAGAGTCTGAAGGTCCACGTGGACGCGAAGCACTCTAGGGCGTCGCGCGCCCCTGTGATACTACCTGCGGAAGGGAGTTCAAGAATAAAGGACAGCTGA
Protein Sequence: MEIVIKREHVNPDNSIAAKNITDADGYETQNAIKVVANEVKLKFFCDLDAIINACELCGKKYSSTGNLIRHIESFHCRFTHLCDKCGKTFSQKVTLETHIATVHNNGNDATSYACATCVKKFSSKSSLERHVGSLHRGVGHSCDSCEKTFTRRQYLQSHIDKVHRHGDLLKDDHNGVRYLCDACGRIFTRKGNLKNHVASVHHGIGHSCDLCEKTFTRNTYLRDHVDAVHNGLSHLCDRCGKKFSSREYLRCHIDGSHEGVANTCDECGKTFATRKSLKVHVDAKHSRASRAPVILPAEGSSRIKDS

Sequence clustering based on sequence similarity using MMseqs2