Tden013194.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000050.1:287828-289463[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 31 5.5 1.4 15 43 137 162 128 163 0.77 2 12 0.07 14 6.6 1.3 18 43 168 190 164 191 0.81 3 12 0.0075 1.5 9.7 1.3 1 43 180 218 180 219 0.80 4 12 0.0048 0.94 10.3 0.9 19 44 225 247 220 247 0.87 5 12 0.045 8.9 7.2 0.3 19 40 253 271 250 279 0.91 6 12 0.00068 0.13 13.0 0.8 16 44 282 307 273 307 0.88 7 12 0.43 84 4.1 3.6 18 44 312 346 310 346 0.83 8 12 0.3 59 4.6 2.1 17 33 350 366 337 374 0.70 9 12 0.045 8.9 7.2 0.7 14 43 375 401 363 402 0.76 10 12 0.02 3.9 8.3 2.5 1 29 391 418 391 434 0.77 11 12 1.1 2.1e+02 2.8 1.0 19 29 436 446 431 457 0.82 12 12 0.14 28 5.6 0.8 18 40 462 481 448 488 0.83
Sequence Information
- Coding Sequence
- ATGGAATCCAGCGATATACTTAATTCTGTCAGAGTGAAAGAAGAACCCTGTGATACGTCTTTTATCGAGAATGATAACAATGTCATTGATGAGACGCCCGATGTTGAATATATCCGATTCTTCAGAGAATATTCaACCCATATCCTTCCAAAATGTGacattaaacttgaaaaagaaCTTGACAACGAAGTAGAAATAGTCGTTGAATGTGAAGATGTGAAGCCTAAAACTCATTTACTGCCagttacaaaaattgaagataattCTCAAAATCACTCGAGGAATGTGAAAGATGGCGATGATTACAATGCTCAAAACACAATTAAAATAGAACCCGCCGAGGAAGTGAATCGAGAAATTGTCAGTGAacataaaatcaaaacaatcATTAGTTtggtacataataaaaatacttatgCATGTAATAGATGCGGAAAGTCATTTACTCGAAAAATTGGTCttaaaatccacatcgattcgatcCACAATGGTGTCACGCATACATGTGATGTATGCGGAAAGACGTATAAAGGAAAGAGTGAAGTGTATAAGCACGTTCAATCAGTACATAATGGTGTCACCTactcatgtgatatttgcggcaAGTCATTTACTCAGAAAAGTAGTCTCAATACCCACATCGATTCAATTCACAATGGGATTTCTCactcatgtgatatttgcggcaAGACGTTTAAAAGAAAGGGTGATATTACGAGGCACGTTCAATCAGCGCATAATGGTGTCACCCactcatgtgatatttgcggaaaggcatttactcaaaaatataatctCAAGTATCATCTCAAAGGCCATACCGATGTGACGCACAATGGTGTCAAATattcatgtgatatttgcgaaaagaaattctcaaTTAGGGGTAATCTCAAGAAACACATGGACTCGGTACACAATAAAATCACTCACACATGCAATCTATGTCAAAAGTCGTTCACAACTAAAGCTTATCTCAAAACCCACATCGATTCGTTACATAATTATCTCAAGAACCACGTTAACTcggtgcataataaaatcacttacatatgtgatatttgcggaaagacattCGCAAGTAAGGATTATATCAAAAATCACGTCGAGGCGGCACACAATGGTATCAAATATGCATGCGATACGTGTGGGaagtcattttcacaaaaGAGCAATGTAAAAACCCACATTGACGCGGTGCATAATGGCGTCAAACATAGatgtgatatttgtggaaAAACCTTCTCATCAAATCGGTATCTCAAAGTCCACGTCGATTcggtgcacaatggtgtcaaaCATGGGTGCAATACATGTGGAAAGAAATTCACAACAAAAGTTTATCTAAAAATCCACACTAAGGCGCATAATGGTGTCGACTTttcatgtgatatttgcggaaagaaattctcaGCGAACAAGTATCTCAAATACCATATTTATTCATTGGTTCATCACTCCCACATTACAAGTTAA
- Protein Sequence
- MESSDILNSVRVKEEPCDTSFIENDNNVIDETPDVEYIRFFREYSTHILPKCDIKLEKELDNEVEIVVECEDVKPKTHLLPVTKIEDNSQNHSRNVKDGDDYNAQNTIKIEPAEEVNREIVSEHKIKTIISLVHNKNTYACNRCGKSFTRKIGLKIHIDSIHNGVTHTCDVCGKTYKGKSEVYKHVQSVHNGVTYSCDICGKSFTQKSSLNTHIDSIHNGISHSCDICGKTFKRKGDITRHVQSAHNGVTHSCDICGKAFTQKYNLKYHLKGHTDVTHNGVKYSCDICEKKFSIRGNLKKHMDSVHNKITHTCNLCQKSFTTKAYLKTHIDSLHNYLKNHVNSVHNKITYICDICGKTFASKDYIKNHVEAAHNGIKYACDTCGKSFSQKSNVKTHIDAVHNGVKHRCDICGKTFSSNRYLKVHVDSVHNGVKHGCNTCGKKFTTKVYLKIHTKAHNGVDFSCDICGKKFSANKYLKYHIYSLVHHSHITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482836;
- 90% Identity
- iTF_01482836;
- 80% Identity
- iTF_01482836;