Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.029 5.8 7.8 3.4 16 43 167 191 160 197 0.83

2 7 2.8 5.4e+02 1.5 0.8 19 29 198 208 191 220 0.80

3 7 0.00012 0.024 15.4 0.7 6 44 214 248 208 248 0.84

4 7 0.025 5 8.0 2.3 17 44 252 276 250 276 0.89

5 7 0.035 6.9 7.6 2.3 15 44 278 304 275 304 0.86

6 7 0.0067 1.3 9.9 0.6 18 44 309 332 307 332 0.94

7 7 0.19 37 5.2 0.1 18 43 337 359 334 360 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.029	5.8	7.8	3.4	16	43	167	191	160	197	0.83
2	7	2.8	5.4e+02	1.5	0.8	19	29	198	208	191	220	0.80
3	7	0.00012	0.024	15.4	0.7	6	44	214	248	208	248	0.84
4	7	0.025	5	8.0	2.3	17	44	252	276	250	276	0.89
5	7	0.035	6.9	7.6	2.3	15	44	278	304	275	304	0.86
6	7	0.0067	1.3	9.9	0.6	18	44	309	332	307	332	0.94
7	7	0.19	37	5.2	0.1	18	43	337	359	334	360	0.78

Coding Sequence: ATGGAAACCAGTGATTTATTTAACTGCGCCGTCAGGGTGAAAGAGGAGCCTATCGATGTGTTGCTTACTGAACAAAATAGTGGAATGATTGACGATAAACCCAATCTTAAAAACTTCCAACTCTTACCGTCTCTGCAAGAAAATTCCGCCCATACGCTTCGAAAATGTGATATGAATCCTGGAAACAGACTCGATGACGAGATGGAAATAGTTTTTGAATGTGAAGATGTCAAGCCCAAAGTAGATTTACTGTTAGTTCCGAAAATTGAGGATTGTTCTTCAAATCACTTGTGGAATATGAAAGATAAAGATGACAAAACTCTAAACCCAATTAAAGTGGAACCCATGGAGGAGGTGAAACAAGAAATACCAAGTGGCGCCGCGGAAGAATCGAATGTGAATTTCGACTCTAAACTTGTCGAACGGAACAACAAAAGAAGAATTACAAAAAAGTCCGACAACAAACGGGGACTAAAATCACGCAGTAGCTGTTGTGGTATCCACAGGTGTAACACAtgtggaaaaatatttaaacaaaaagttAATCTCAAAACCCACATCGATGCGTTGCATAATAAAATCTCTCATCCTTGTGATAcatgtggaaagacattcacaAGTAAGTATTATCTCAAGGACCACGccgattcggtgcataatggtgCCAAAAATGTGTGTGATATATGCGGAAAAACATTCATCCGTAAACAGAATCTCCAAAGCCACATCGACACCGTTCACAATGGCGTTAAACATGTTTGCaatatatgccaaaagacattcgCCACTAAGTATTATCTCAAGGACCACATCAATTCGATGCATAATGGTACCAAACATACATGTGACGTATGCGGAAAAgcatttgtaaataaaagtagtgTAAAATACCACATAGATACAATGCATAACGATATCCTCCATGAATGCGATAtatgtggaaagacattctTACAAAAGAATAATCTCAGTGTCCATATTGTTGCGAAGCATAGTGGTGTAAGAAATGCATGCGATTTATGCGGGAAGACATTCGCACAAAAATGGTATCTAAAAacccacatcgattcggtgcataatggtctgctataa
Protein Sequence: METSDLFNCAVRVKEEPIDVLLTEQNSGMIDDKPNLKNFQLLPSLQENSAHTLRKCDMNPGNRLDDEMEIVFECEDVKPKVDLLLVPKIEDCSSNHLWNMKDKDDKTLNPIKVEPMEEVKQEIPSGAAEESNVNFDSKLVERNNKRRITKKSDNKRGLKSRSSCCGIHRCNTCGKIFKQKVNLKTHIDALHNKISHPCDTCGKTFTSKYYLKDHADSVHNGAKNVCDICGKTFIRKQNLQSHIDTVHNGVKHVCNICQKTFATKYYLKDHINSMHNGTKHTCDVCGKAFVNKSSVKYHIDTMHNDILHECDICGKTFLQKNNLSVHIVAKHSGVRNACDLCGKTFAQKWYLKTHIDSVHNGLL

Sequence clustering based on sequence similarity using MMseqs2