Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.1 1.6e+03 -0.0 0.5 33 44 32 43 25 47 0.81

2 12 1.6 3.1e+02 2.3 3.2 19 43 49 70 46 71 0.89

3 12 0.00016 0.031 15.1 0.8 19 44 77 99 73 99 0.95

4 12 0.079 16 6.4 1.1 19 43 105 126 103 128 0.88

5 12 0.086 17 6.3 1.9 19 44 133 155 128 155 0.91

6 12 1.2 2.4e+02 2.6 2.1 19 44 161 183 158 183 0.92

7 12 0.26 51 4.8 0.8 19 44 189 211 186 211 0.91

8 12 8.8e-05 0.017 15.9 0.4 18 44 216 239 213 239 0.93

9 12 0.005 0.99 10.2 0.4 18 44 244 267 240 267 0.90

10 12 0.0022 0.43 11.4 2.3 19 44 273 295 271 295 0.93

11 12 0.089 18 6.3 2.9 19 44 301 323 299 323 0.87

12 12 0.033 6.6 7.6 0.3 18 44 328 351 325 351 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.1	1.6e+03	-0.0	0.5	33	44	32	43	25	47	0.81
2	12	1.6	3.1e+02	2.3	3.2	19	43	49	70	46	71	0.89
3	12	0.00016	0.031	15.1	0.8	19	44	77	99	73	99	0.95
4	12	0.079	16	6.4	1.1	19	43	105	126	103	128	0.88
5	12	0.086	17	6.3	1.9	19	44	133	155	128	155	0.91
6	12	1.2	2.4e+02	2.6	2.1	19	44	161	183	158	183	0.92
7	12	0.26	51	4.8	0.8	19	44	189	211	186	211	0.91
8	12	8.8e-05	0.017	15.9	0.4	18	44	216	239	213	239	0.93
9	12	0.005	0.99	10.2	0.4	18	44	244	267	240	267	0.90
10	12	0.0022	0.43	11.4	2.3	19	44	273	295	271	295	0.93
11	12	0.089	18	6.3	2.9	19	44	301	323	299	323	0.87
12	12	0.033	6.6	7.6	0.3	18	44	328	351	325	351	0.90

Coding Sequence: ATGTTAAGCGAAGTAGAAACTGATTTGAATTTCGGACGTGGACTCAGCGAACAAAATAAACAAGGAACTGTTTCCAAAGAGCTTAACTATGAACATAGGCTAAAAACTCACATTGATACTACGCATAATGGAATCagacatgcatgtgatatttgcggaaaatcATTCAGACATAAGAGTCATCTCCAAAGACACATCGATTCGTTACATCGTAAAATTACGCATCCATGCGATATATGTCAAAAGACATTCTCAAacaagagtaatctcaaaactcacatcgattcggtgcataatggtatTTTACATGCATGTGATGTTTGTGGAAAGACATATactcaaaaaaatcatctcaaaacccacgtcgattcggtgcatcataaaataaggcatgcatgtgatatttgcggaaaatcATTCAGACAAAAGAGTCATCTCCGAAGACACATCGATTCGTTGCATCGTAAAATAAGGTATGGATGTGATGTATGTGGAAAATCATTCAGACATAAGAGTCATCTCCAAAGACACATAGATTCGTTTCATCGTAAAATTACGCATCCATGCGATATATGCCAAAATACGTTCACACAAAAAGGTAGGCTCAAAGGCCATATCaattcggtgcataatggtgCCAGTTATGCATGCGATATATGCCGAAAGACATTCTCAGAGAAGAGTAATCTCAATAGACACATCGAATCGGTGCATAATAAAGTTAGATatacatgtgatatatgtAAAAAGACATTCTCAGACAAGAGTACTCTCAAAATACATATCGAAGCAGTGCACAATGGAATCGGCTCCGCATGTGACGTATGCGGAAAGAATTACACACGTAAAAATCATCTCAAAAGGCATATGGATGCGATGCATAATGGAATCACCCACGCATGTGAtttctgcgaaaaaaaatataaatatcaaactCATCTCAATGAACATGTCAAAACCTCGCACAATGGTATCGTATATTCATGCAAGACATGCGGAAAGACATTTGGACAGAAAAGAAATCTCAGAGCTCACATCGATGTGGCGCATCGCTCACTCAATATGAcctaa
Protein Sequence: MLSEVETDLNFGRGLSEQNKQGTVSKELNYEHRLKTHIDTTHNGIRHACDICGKSFRHKSHLQRHIDSLHRKITHPCDICQKTFSNKSNLKTHIDSVHNGILHACDVCGKTYTQKNHLKTHVDSVHHKIRHACDICGKSFRQKSHLRRHIDSLHRKIRYGCDVCGKSFRHKSHLQRHIDSFHRKITHPCDICQNTFTQKGRLKGHINSVHNGASYACDICRKTFSEKSNLNRHIESVHNKVRYTCDICKKTFSDKSTLKIHIEAVHNGIGSACDVCGKNYTRKNHLKRHMDAMHNGITHACDFCEKKYKYQTHLNEHVKTSHNGIVYSCKTCGKTFGQKRNLRAHIDVAHRSLNMT

Sequence clustering based on sequence similarity using MMseqs2