Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.031 6 7.7 2.7 18 43 172 194 154 195 0.86

2 6 0.069 13 6.6 1.1 19 43 201 222 198 223 0.84

3 6 4.8e-06 0.00094 19.9 1.6 17 44 227 251 224 251 0.95

4 6 0.12 23 5.9 2.3 19 44 257 279 254 279 0.91

5 6 0.00036 0.071 13.9 1.0 17 44 283 307 279 307 0.90

6 6 0.077 15 6.5 0.7 18 38 312 329 309 329 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.031	6	7.7	2.7	18	43	172	194	154	195	0.86
2	6	0.069	13	6.6	1.1	19	43	201	222	198	223	0.84
3	6	4.8e-06	0.00094	19.9	1.6	17	44	227	251	224	251	0.95
4	6	0.12	23	5.9	2.3	19	44	257	279	254	279	0.91
5	6	0.00036	0.071	13.9	1.0	17	44	283	307	279	307	0.90
6	6	0.077	15	6.5	0.7	18	38	312	329	309	329	0.85

Coding Sequence: atgaaatccAGTGATATACTTGATTGTGCTCTTagAGTGAAAGAGGAGCCTACTGATGTCTCACTTATTGAAAATAACTGTGAAATGACTGATGAAAAACCTGATCTGACAAACATCCAACTTTTAACATTTCCACAAGGAAATTCGACGTATACCTTTCGGAAGTGTGAAGAAAATCATGAAAGTGAACGTGATGGCGGACTGGAAATAGTTGTTGAATGCAAAGACGTCAAGCCTTTCATGGATTTATTGACAGTTCAGAAAATTGATGATGATTCACCAAATCACTTGCGGCATTTAAAAGATAATGGTAATAACAAacatcaaaatataataaaaatagaaccGTTAGAGGAAGTGAAACAGGAATTTGTCGCTGACATTGATGAAGAAtcgaatttgaatttcgattttgaatttgacaagcaaaataaaaacagaataattaaaaaaaatgttaacaaaCATAACTCTGAAACACACCTTGGCACTGTGTACAACGATACAACCCACCCATGTGTTATATGTGGCAAGacatttaaacataaaaataacatgAAGACCCACGTTGATGGTGTGCACAATGGTATcacacatgcatgtgatatttgtggaaaaaaattcacaagtaAGAgttatctcaaaatccacattgGTActgtgcacaatggtgtcaccaataaatgtgatatttgtggaaagaaattttcaagcaagagtaatctcaaaatccacatgaATACGAAGCACAATGGTTTCACCCACGCATGTGATGtctgtggaaaaaaatttacgtgcAAGcgtaatatgaaaaatcacattGATTCGTTGCATAATGGTACTACACATGtgtgtgatatttgcggaaaacCATTTTCACGAAAAGAGTGTCTAAAAACCCACATCGATTCGCTTCACCGTAAAATCACtcataaatgtgatatttgtgaaaaaaaattttcggacCGATCTAGCCTCAGAAGGcatgataaaatttcacgtAAGGGTAAGTAA
Protein Sequence: MKSSDILDCALRVKEEPTDVSLIENNCEMTDEKPDLTNIQLLTFPQGNSTYTFRKCEENHESERDGGLEIVVECKDVKPFMDLLTVQKIDDDSPNHLRHLKDNGNNKHQNIIKIEPLEEVKQEFVADIDEESNLNFDFEFDKQNKNRIIKKNVNKHNSETHLGTVYNDTTHPCVICGKTFKHKNNMKTHVDGVHNGITHACDICGKKFTSKSYLKIHIGTVHNGVTNKCDICGKKFSSKSNLKIHMNTKHNGFTHACDVCGKKFTCKRNMKNHIDSLHNGTTHVCDICGKPFSRKECLKTHIDSLHRKITHKCDICEKKFSDRSSLRRHDKISRKGK

Sequence clustering based on sequence similarity using MMseqs2