Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0017 0.33 11.8 3.5 13 44 150 178 139 178 0.89

2 7 0.14 27 5.6 0.2 18 43 183 205 180 210 0.86

3 7 0.00019 0.038 14.8 1.0 19 44 212 234 207 234 0.94

4 7 0.0039 0.77 10.6 1.4 18 43 239 261 236 262 0.81

5 7 0.0016 0.31 11.9 2.9 19 44 268 290 263 290 0.94

6 7 0.019 3.6 8.4 0.9 19 43 296 317 293 318 0.86

7 7 0.87 1.7e+02 3.1 7.1 18 44 323 346 319 346 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0017	0.33	11.8	3.5	13	44	150	178	139	178	0.89
2	7	0.14	27	5.6	0.2	18	43	183	205	180	210	0.86
3	7	0.00019	0.038	14.8	1.0	19	44	212	234	207	234	0.94
4	7	0.0039	0.77	10.6	1.4	18	43	239	261	236	262	0.81
5	7	0.0016	0.31	11.9	2.9	19	44	268	290	263	290	0.94
6	7	0.019	3.6	8.4	0.9	19	43	296	317	293	318	0.86
7	7	0.87	1.7e+02	3.1	7.1	18	44	323	346	319	346	0.92

Coding Sequence: ATGGAATCCAATGATATAATCGATTGTGCTAtcagAGTGAAAGAGGAGCCTAGTGATGCGCCGCTTATTGGAAATGATTGTGGAATGATTAACGAAAAAGCTGATCTGAAAAACTTTCAACTATTaccattttttcgaaaaaattcaACCCATATCCCTCGAAAGTGTGAAGGATATAGTGAAAATGAACTTGCTGACGAagcaaaaatagtttttgagtGTGAAGACATGAAGCCTAATAATAGTTCATTAGCAGTTAAGAAAACTGACGATGATTCTCAAAATCATTTGCGAACAGATACCGATGACTATCAAACTCAAAGCTTAATTATTATAGAACCTGTGGGCAAAGTGAAACAAGAATACTTTAATGACGCTGCAGAAGAATCGAATTTGAATAATTTAAACCATAAAAACGGACTCAAAACACACACCGGTTCAGACCATAATGAAACAACCCATCAATGTGAAgtatgcggaaagaaattctcaactaagagtaatctcaaaatgCACATTTCTACGTTGCACAAGGGTGTCAAACatgcatgcgataaatgcggaaagaaatttgcacaaaaGAGTCAACTCAAAGTTCACATTGATGCAGTGCATAAGGGTGTCAGGCATGCATGCGAtgtatgcgaaaaaaaattctcaaataaAAGCAatctcaaaaatcacatttctACGTTCCACAAGGGTGTCAAGCATGCGTGTAATATATGCGGcaagacattttcacaaaagggTAGTCTCAAAGTTCACATTGATTCAGCACACCATGATGTCGCACATGCTTGTGATATTTGtgcgaaaaaatgttcaactaagagtaatctcaaaactcacattgaTAGGAAGCATAATGGTGTAACATATTCTTGCGATATTTGCGGtaagaaatattcaaaaaagagTTATCTCAAGTTACACATCGATGCAATGCATAACGGGGTCATATGTAAATGTGACTTATGCGAAAAGAAATGCTCCACAAAGAGTCATCTTAAAACTCACATTAATGCGATGCATAATTGTGCTCCAAAAATTAACGTTATAACTTGA
Protein Sequence: MESNDIIDCAIRVKEEPSDAPLIGNDCGMINEKADLKNFQLLPFFRKNSTHIPRKCEGYSENELADEAKIVFECEDMKPNNSSLAVKKTDDDSQNHLRTDTDDYQTQSLIIIEPVGKVKQEYFNDAAEESNLNNLNHKNGLKTHTGSDHNETTHQCEVCGKKFSTKSNLKMHISTLHKGVKHACDKCGKKFAQKSQLKVHIDAVHKGVRHACDVCEKKFSNKSNLKNHISTFHKGVKHACNICGKTFSQKGSLKVHIDSAHHDVAHACDICAKKCSTKSNLKTHIDRKHNGVTYSCDICGKKYSKKSYLKLHIDAMHNGVICKCDLCEKKCSTKSHLKTHINAMHNCAPKINVIT

Sequence clustering based on sequence similarity using MMseqs2