Tden005700.3
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000013.1:1649323-1650938[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.41 80 4.1 1.8 18 34 171 184 165 194 0.79 2 12 3.5 6.8e+02 1.2 2.7 18 43 199 221 188 226 0.81 3 12 0.022 4.3 8.2 6.1 18 43 227 249 216 250 0.92 4 12 0.079 16 6.4 0.9 19 44 256 278 254 278 0.92 5 12 0.005 0.99 10.3 0.4 18 44 283 306 279 306 0.89 6 12 9e-06 0.0018 19.1 1.6 19 44 312 334 310 334 0.93 7 12 0.078 15 6.4 1.3 18 32 339 353 337 362 0.76 8 12 7.8e-05 0.015 16.1 1.1 18 44 367 390 351 390 0.78 9 12 0.0033 0.66 10.8 1.1 18 44 395 418 391 418 0.88 10 12 0.89 1.7e+02 3.1 5.2 19 43 424 445 420 450 0.76 11 12 0.00076 0.15 12.9 4.7 17 43 450 473 437 474 0.84 12 12 3.6 7e+02 1.1 0.4 18 26 479 487 477 490 0.89
Sequence Information
- Coding Sequence
- ATGGATTCCAGTAGTATTTTCAATAGTGCCTTgagaaTAAAAAAGGAACACATCGACGAGTGGCTTCCcgaaaataattatgatataaTTGACAAGAAACCCGATGTCAACGGTGGTCAGTACGTCGGATTTCCGTTAAATGATTCGgaGCTTCGAAAATATGacgataacaataaaattaagctTGACGAAGTGCATATTGAGTTTGAGTGTAAAGTCGAGAAGCTCGACATGAATTCATTAGcattaaagaaaattgaagattatTCTCCAAATAATTTGCAAGATGTAAAGTATGGTTTTGAAACCcagaaagtaataaaaatagaaaatgtgTCAAGAGTGAAGGaagaaatgaatttgaatttcgattGTGAACTCAGCGAGcaaaatgaaagagaaaatgatGGAAAAGATTCTAAATACAAACGCGGGCTCAAAAGACGCATCAGTTCAGTGCATAGTGATATTGGCTACGCATGCAATTCTTTACATCGTTGTAATACTCATTCATGTAACACATGTGGCAAAACATTTTCACACGAAAATGGCCTCATAATCCACACCGATTTGATGCACAAAGGTGTCACGCATGTATGCGACATATGTGAATCGAAATTCACGACTAAGCATAGTCTTCAAACTCACATCGATGAGGTTCATAATGGTATCAGCCATACATGCAATTTGTGCAAAAAGACGTTTAAACATAAGAATGATCTTACTAGGCACGTTCAATCAATGCATACTCGTTCCGGACATTCATGTGATACATgcgaaaagtcattttcaatGAGTTTTAATCTGAAgaaacacatcgattcggtgcataataaaatcaattatgaATGTGATATATGTGAAAAGAAGTTCTCatataaaagttatttaaaaatccataTTGATTCAGTCCACAATGGCGTGTATCGCTCATGcaatatttgcggaaagaagtACTCACGGATGACTAATCTAAAGCAACATATCGATGTggcgcacaatggtgtcacacatACTTGTGATATTTGCGAAAAGAAGTTCTCTCATAAGAGCACTGTCAATAAACACATCGATGcggtgcataataaaatcaatgatgAATGCGAcatttgcggaaagaaatacTCACGGAAGAGTGATCTCAAAAGACACATCGATGcggtgcataataaaatcattcatgaatgtgatatttgcggaaagaaatacTCACAGAAGATTAGTCTCAAAAGACACATTGATGCAGCGCACAATAGTGTCACACATaattgtgatatttgcggaaagaaatacTCACATAAGATTAGTCTCAAATGCCACATCGATTCAGTGCACAATAGTGTCACACATACTTGTGAtatatgcaaaaagaaattctcCACTAgcagtaatttaaaaaatcacatcgaTTCCGtgcatgataaaattttacatgaatgtgatatttgcgagAAGAAAATTCTCAAAGAAAAGTAA
- Protein Sequence
- MDSSSIFNSALRIKKEHIDEWLPENNYDIIDKKPDVNGGQYVGFPLNDSELRKYDDNNKIKLDEVHIEFECKVEKLDMNSLALKKIEDYSPNNLQDVKYGFETQKVIKIENVSRVKEEMNLNFDCELSEQNERENDGKDSKYKRGLKRRISSVHSDIGYACNSLHRCNTHSCNTCGKTFSHENGLIIHTDLMHKGVTHVCDICESKFTTKHSLQTHIDEVHNGISHTCNLCKKTFKHKNDLTRHVQSMHTRSGHSCDTCEKSFSMSFNLKKHIDSVHNKINYECDICEKKFSYKSYLKIHIDSVHNGVYRSCNICGKKYSRMTNLKQHIDVAHNGVTHTCDICEKKFSHKSTVNKHIDAVHNKINDECDICGKKYSRKSDLKRHIDAVHNKIIHECDICGKKYSQKISLKRHIDAAHNSVTHNCDICGKKYSHKISLKCHIDSVHNSVTHTCDICKKKFSTSSNLKNHIDSVHDKILHECDICEKKILKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482921;
- 90% Identity
- iTF_01482921;
- 80% Identity
- iTF_01482921;