Tden012958.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000048.1:501112-502745[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 29 5.6 0.0 22 44 151 170 149 170 0.93 2 12 0.015 3 8.7 0.2 18 44 175 198 173 198 0.90 3 12 0.044 8.7 7.2 0.8 19 39 204 221 201 227 0.73 4 12 0.0051 1 10.2 4.6 4 44 218 254 216 254 0.77 5 12 0.0022 0.43 11.4 0.8 19 44 260 282 257 282 0.93 6 12 0.026 5.2 8.0 3.3 18 44 287 310 285 310 0.93 7 12 0.0034 0.67 10.8 0.6 18 44 315 338 313 338 0.90 8 12 0.0043 0.85 10.5 0.6 19 44 344 366 342 370 0.89 9 12 0.026 5 8.0 1.2 19 44 372 394 366 394 0.89 10 12 0.013 2.6 8.9 0.6 19 44 400 422 397 422 0.89 11 12 0.068 13 6.6 0.6 19 44 428 450 425 450 0.92 12 12 0.00078 0.15 12.9 2.1 19 44 456 478 454 478 0.92
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGGATATGCTGtcagAGTGAAAGATGAACCTGTAGACGTGTCGCCTATTGAAAATAATGGTATAATAACTGACAAGACACTCGACTTGTACCCCTTATCATTTCTGCAAGAAAATCCAATCAAAATGCTTCAAGAATATGACGAAGATCATGAACGCGAGTTCAATGATGATATTGAGATAGTTGTAGAATGCAAAGACGTAAAGCCCAGTACGGATTTATTAgtagttaaaaaaatggaCGATTATCCTCCAAATCAATTGCCGGATGTGAAATATAGTTCTGATTATAAAACTCATGATAGAATTAAAATAGAACCTTTGGATGAAGTGAAACatgaatttttcgacgaagaagcaatgcaattgaaatttgatagTGGACtcggcgaaaaaaatgaaaaaattacgaaaaagtttaataacaaaaattttgatgtatgtgaaaagacattttcacaaaaaagtaatcttaAAATCCATGTAGATTCAGTACACAATCGTATCACATATCAATGTGATACATGCGGAAAGGAGTACTCAAAGAAAGGTGATCTCAAgaaacacatcgattcggcTCATAATGGTATTAGGCATGCATGTGGTATATGTGGCAAGACATTTTCACAGAAGGGTGATGTGAAGAAACACATCAATGAggtgcataataaaatcactTATCCTTGTGATACATGCAAAAAGAAGTTCTCAAATAGAAGTAATCTTTACAGACATATAAATTCAACGCACAATGGTATCAGATATGCATGTAGTATTTgcgaaaagacattcacaacaaagcgaaatttcaaaaaccacaTCGATTCGGCCCATAATGGTATCAGGCATAATTGCGATTTATGCGAAAAGTCGTTTACTTATAACCATAATCTCAAGACCCACAtcgattcagtgcataatggTGTCACATATAAATGCGATATCTGCGGAAAGAAGTACTCCGATAAGGGTTATCTTAAAAAACACATTGATTCGAACCATAATGGTATTACTCATGCATGTGGTATATGTGGCAAGACATTTTCACAGAAGGGTGATATGAAGAAACACATCAATACGGTGCATAATAAAACCACTCATCCATGTGATACATGCGAAAAGAAGTTCTCAAATGAAATTAATCTTTACAGACATATAAATTCAACGCACAATGGTATCAGATATGCATGTAgtatttgcgaaaaaaaattttcacaaaaaagtaCTCTCACCATCCACATAGATAAGGTGCACAATAATGTcacacatgcatgtgatacatgtgagaagaaattttcagaaaaagctAGTcttaaaaaacacatcgattcggcCCATAATGGTATTACGCATGCATGTGGtatatgcggaaaaaaatacacacggAAGGGTGGTCTTAAGAAACACATCGATTCGACCCATAATGGTATAACGCATGCATTTAGTATATGCGAGAAGAAATGCTCATAG
- Protein Sequence
- MESSGYAVRVKDEPVDVSPIENNGIITDKTLDLYPLSFLQENPIKMLQEYDEDHEREFNDDIEIVVECKDVKPSTDLLVVKKMDDYPPNQLPDVKYSSDYKTHDRIKIEPLDEVKHEFFDEEAMQLKFDSGLGEKNEKITKKFNNKNFDVCEKTFSQKSNLKIHVDSVHNRITYQCDTCGKEYSKKGDLKKHIDSAHNGIRHACGICGKTFSQKGDVKKHINEVHNKITYPCDTCKKKFSNRSNLYRHINSTHNGIRYACSICEKTFTTKRNFKNHIDSAHNGIRHNCDLCEKSFTYNHNLKTHIDSVHNGVTYKCDICGKKYSDKGYLKKHIDSNHNGITHACGICGKTFSQKGDMKKHINTVHNKTTHPCDTCEKKFSNEINLYRHINSTHNGIRYACSICEKKFSQKSTLTIHIDKVHNNVTHACDTCEKKFSEKASLKKHIDSAHNGITHACGICGKKYTRKGGLKKHIDSTHNGITHAFSICEKKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482834;
- 90% Identity
- iTF_01482834;
- 80% Identity
- iTF_01482834;