Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.2e-08 1.3e-05 25.6 0.2 17 44 1 28 1 29 0.95

2 3 3.6 4e+03 -1.6 0.0 15 23 105 113 100 114 0.78

3 3 8.8 9.8e+03 -2.8 0.0 30 40 123 133 123 134 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.2e-08	1.3e-05	25.6	0.2	17	44	1	28	1	29	0.95
2	3	3.6	4e+03	-1.6	0.0	15	23	105	113	100	114	0.78
3	3	8.8	9.8e+03	-2.8	0.0	30	40	123	133	123	134	0.86

Coding Sequence: ATGAGTATTGCCGAAGCTTCCCGAACTTACAACGTGCCTGAATCTACGATAAGAGCTCGAAAATCTGGTAAATATACCAGTGACAGATCAGGACGAACAGTATTCTCAAAAGCTGAAGAGACTGAGCTCGCTGACTGGATAGATATGAGTTGCAATAAAGGAAACCCAGTGACCAAGAAGCAATTGGTGAATTGTGTAGAagttatttgcacaaaaaccAAGAAACCAAATcctttcaagaaaaataaacctGGGAGATCATGGTACGCAGGTTTCACGAACAGAAATCAAGATATTGTCGTTAGAAAACCtgaaaaagtttctttgaGAAGAGCTCAAGTCGATGTAACAAGTGTCGAAACTTGGTATACTACAATCAAAAAGCATTTGGAAGAAAAAGGGCTGCTGAACATTCCACCTGAGCGAATATGGAATTGCGATGAAGCTGgattttcattaaatCCAACACCCTCCAAAGTGCTGGCACGAAAAGGctgcaaaaatgtttacaaggTAGTTGgtggaaatgaaaaagaaaatgtaagcGTACTGATGATGGTGAATGCTGCTGGCAGCGTAGGACCAACATTTGTTtaccaaaaatatttacctaCACCAGATACtaataatttgtataaaaagaaACCAGGGCAACGAACAATAAAAACTAAAGTTGACAATAATTGTTCAGTGATATCAGGTTCTGAATggcaaaaaagagaagaagacaaaattaaattaaagctcgaatcagaaaatgattcaaaatcaaaacgCCAAGCAAGATTaaaaaaagcagaagaaacaagagtagaaaaagaaaaagcagaaAGAAacattacgtaa
Protein Sequence: MSIAEASRTYNVPESTIRARKSGKYTSDRSGRTVFSKAEETELADWIDMSCNKGNPVTKKQLVNCVEVICTKTKKPNPFKKNKPGRSWYAGFTNRNQDIVVRKPEKVSLRRAQVDVTSVETWYTTIKKHLEEKGLLNIPPERIWNCDEAGFSLNPTPSKVLARKGCKNVYKVVGGNEKENVSVLMMVNAAGSVGPTFVYQKYLPTPDTNNLYKKKPGQRTIKTKVDNNCSVISGSEWQKREEDKIKLKLESENDSKSKRQARLKKAEETRVEKEKAERNIT

Sequence clustering based on sequence similarity using MMseqs2