Tden002972.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000005.1:859245-859814[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 3.7e+03 -1.5 0.0 32 43 24 36 22 37 0.80 2 2 7.4e-11 8.3e-08 32.6 0.0 4 36 42 74 41 79 0.92
Sequence Information
- Coding Sequence
- atgaaaattgttaaaaataaatctaatgGGTCTAAACTCAAACCTCGCTCCAGCTTTAAAGTGAAAGAAACGATTAAAAGAGCAAGAGTTAGAAGAGGACCTGAAAAGCAATATAGTATACAAGATATGAAAGCAGCTCTGAATGCTGTTGGCAAAGGTGTCACTATGCGAAAGGCAGGTCTGCACTATGGCGTGCCAAAGACGACTATCCATGCCAAATACCATAATCACTCTCCAATAGAATGCAAGAAAGGATCAGCAACCCAACTGTCAACTGCAGAAGAAGAGTATATTGCTCAATGGATTCTGGAGTGTGCTGATAGAGGCTTTCCTGTGTCAAAAACTATTCTATTGGATAATGTTGAAAGATATATgaagaatttgaaaagaaaatcaaagttCAAAGAATACATGCCTGGGCCAGTGGCAGTTCGGGGACGCTGTACAGCGCTCACAaggccaaaaaaaagaagaagaagaaaaaggccTGAGCCAAAAAGGTTTGGAGCCTTTGTAACGTCCTGCGTTACAAAGCCTGCGCAAGGACGACCCTCCAACGCCGCGTACTGA
- Protein Sequence
- MKIVKNKSNGSKLKPRSSFKVKETIKRARVRRGPEKQYSIQDMKAALNAVGKGVTMRKAGLHYGVPKTTIHAKYHNHSPIECKKGSATQLSTAEEEYIAQWILECADRGFPVSKTILLDNVERYMKNLKRKSKFKEYMPGPVAVRGRCTALTRPKKRRRRKRPEPKRFGAFVTSCVTKPAQGRPSNAAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -