Tden025621.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000186.1:124717-125368[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-11 1.7e-08 34.8 0.1 4 42 26 64 23 67 0.92 2 2 6.6 7.3e+03 -2.4 0.0 14 21 143 150 142 159 0.76
Sequence Information
- Coding Sequence
- ATGAGTGCGAATAAAAGACAACGGAAGAAACCTGTTGACGGCTGTCAAAGAAAAAGAGGCTTGTGGACTTCAAATCAATTAATTCAAGCTTTGAAAGCTATTGATAATAAAGAGTGTTCCACCAGAGCCGCCAGCAGAATTTATGGAATTCCTGAAAGCAGtctaagaagaagaaagaaatcaTCCACAGAAAGAGTGAATGGCACATCATCTCCAACATTTGGCCGGCTTCCAACTTTTAATACGTCTCAAGAAAATCTATTAAAAGAAAGAATTATTGAATCCTCTAATGTGTATTGTGGTGTGACACCTAAGCAATGCAGGTCGGTTGCTTTCAGTTTAGCTGAAAAAAATGGTTTAACTCATACATTCAATAAGACTAAAAAGATGGCTGGCCGTAAGTGGTTGAATAACTTTTTGGAAAGGAATGACAAATTAAGTGTACGAAAACCTGAAGCAACCAGCATATACAGAATCAACAGTTTCAATAAagttgaaatagaaaaatttttcaagaatttaaaTAGTCTCACATCTCAGCATAAGTTTTGTTCGCAGTCAGATATTTAA
- Protein Sequence
- MSANKRQRKKPVDGCQRKRGLWTSNQLIQALKAIDNKECSTRAASRIYGIPESSLRRRKKSSTERVNGTSSPTFGRLPTFNTSQENLLKERIIESSNVYCGVTPKQCRSVAFSLAEKNGLTHTFNKTKKMAGRKWLNNFLERNDKLSVRKPEATSIYRINSFNKVEIEKFFKNLNSLTSQHKFCSQSDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -