Tden002445.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- fru
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:1354835-1357080[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-10 2.6e-07 31.0 0.0 1 37 251 287 251 294 0.91 2 4 1.3e-10 1.4e-07 31.8 0.0 1 39 301 338 301 343 0.94 3 4 0.0093 10 6.7 0.0 19 33 369 383 357 388 0.81 4 4 4.4e-11 4.9e-08 33.3 0.1 4 40 415 451 413 455 0.93
Sequence Information
- Coding Sequence
- ATGTCAAAGCGCAGAGTAGCCGAGCTCGATGCCGATCCATCTGAGAATCAGGTGTTTACCTTCAAAGCGAAAGATGATTACAAGGATCGACTGGGCGACATCATTAGAGAAGCGTACGAGCAAGGGTCCATGCTGGATGTGTCATTGTGGGTCGAAGGGGAACAAATACGAGCCCATCGGCCTGTATTATATGGTTGCAGCGAACTTTTTAAGgaACTTTTTAGTCAGACCAATCATGAAGATACTGTATTAATAATTGATGATGTGTGTGCTGAAGATATGAGGTCACTCATACATTTCATGTATTATGGACAAGTTCAGgtcgaagaaaaatatgtaGATAGATTTTTAGATGCTtgtcattttttgaaagtttgtGGATTCGACGAAaTATTAGGATTTGAATCTAGTGAATCAAGTGAAACTTCGAATGATGGGGATATTTGTCAATTTGATACCTCTAGTGAAGCAAACTTGACTGATACACAAATCTCAGATTCAAATACTAGTACTGAAATTCCTTTACCAAGTTTTTCTATAGAAAATCGTACATCAATTACTGATATTAAGAAAACTCCATCAActactaattttaaaaaagcttcatcaataatcaatattaagAAATCTCCATCGATTGTTACGGGTAACCCAAGTTTACCCGTTCAGCcagcaaaaagaagaaggtTGCCTGATTGTCCATTGGGAATTAAATTGACTAAACGGAAAAGTAGTCTTAAAAGAGATTACACTGATGATCAGTTAGAGGCAGCAATTGCTGATATTCGAGCAGGAAAATCATTGATAGAGGCTGCTACTAAACATAATATACCAAGATCTACTTTGTATGTGAGAGCAAAAGTCTTAAATATACCTTTAGCTCCAACAAAAAATGACTACACACATGAAGATATGAGAGCCGCAATCAAATTAGTTCTTGctggATCAAGCTTACAACAATCTGCAGACTGTTATGGAATTCCAAAGACTGTATTATGGAGAAGAATTCAAAAAGAAGGGTGTTACAAAAGTcgaagagataaaaaaacatatccaGAAGAATCTAGGAGGGCAGCTGTAAAAGCATTAGAGAAAGGTGAACCGCTGTGTAAAGTTTCACAAGAGTATCAAATACCAAAAACAACATTGTTCAGGGATAAAACCAAATTAATTGATCAAGGTAAATTACCATCAACGATGTATAAAAAGCGAAataaagtagaagaagaaatgaaaagttcACGTTTAGAAGAGGCAGTAGCAGCTTGTAAAGATGGTACTATGTCACAAAGTGCTGCTTCTGCTAGATATCAAGTACCAAAAACTACTATTTGGAGAAGGCTTCAAAAATCTAAAACTTCTAATACACGAAAAGGTGGTACATGTGAAACCAGCAACATAACTTTTGTTAAGAAGGGTGAAGACATCGATGACAATTTTGAAGATTATTTAGATCAGACTGATGAAAATATAGATGCTGCGTATACTTATGtgaatgaaaatcaaattcctGATGAATCTGTAATTGTCTTAACTCAGGAAGATGTAGAAAATCTGAACATACCAAATCAAGAATCAGTAGTTCTTGTTGAACAAGATAACGTAGACACTAATTTTGTATCTTGTGGCCTACATTTAGATGATAGTTCTCAAAATGTGatagaaatgaaatttaggatggacaattaa
- Protein Sequence
- MSKRRVAELDADPSENQVFTFKAKDDYKDRLGDIIREAYEQGSMLDVSLWVEGEQIRAHRPVLYGCSELFKELFSQTNHEDTVLIIDDVCAEDMRSLIHFMYYGQVQVEEKYVDRFLDACHFLKVCGFDEILGFESSESSETSNDGDICQFDTSSEANLTDTQISDSNTSTEIPLPSFSIENRTSITDIKKTPSTTNFKKASSIINIKKSPSIVTGNPSLPVQPAKRRRLPDCPLGIKLTKRKSSLKRDYTDDQLEAAIADIRAGKSLIEAATKHNIPRSTLYVRAKVLNIPLAPTKNDYTHEDMRAAIKLVLAGSSLQQSADCYGIPKTVLWRRIQKEGCYKSRRDKKTYPEESRRAAVKALEKGEPLCKVSQEYQIPKTTLFRDKTKLIDQGKLPSTMYKKRNKVEEEMKSSRLEEAVAACKDGTMSQSAASARYQVPKTTIWRRLQKSKTSNTRKGGTCETSNITFVKKGEDIDDNFEDYLDQTDENIDAAYTYVNENQIPDESVIVLTQEDVENLNIPNQESVVLVEQDNVDTNFVSCGLHLDDSSQNVIEMKFRMDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484006;
- 90% Identity
- iTF_01482603;
- 80% Identity
- iTF_01482603;