Tden015832.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- ab
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000069.1:1068112-1070757[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.6e-07 0.00041 20.8 0.0 9 39 337 366 337 371 0.87 2 5 8.1e-09 9e-06 26.1 0.0 9 38 400 428 398 433 0.86 3 5 2.2e-07 0.00025 21.5 0.0 9 39 465 494 463 500 0.90 4 5 2.2e-07 0.00025 21.5 0.0 9 38 529 557 529 566 0.86 5 5 5.4e-08 6e-05 23.4 0.1 9 38 595 623 595 630 0.88
Sequence Information
- Coding Sequence
- ATGTCGGAAAAAACGCCGCAACACGACTTGGTGCGACGCATCCAGCTCAAGGAGGACCCGTACCCCAAGGACGACATCATGAAGCTGCTGCGCGAGACCGAGCCCAGCGCGACCCTGTGCTGCGAGTTCGGCTCGGTCAGCTGTCACAAGGACATCCTGGCGGCGCGAAGCGCCCACCTCACGGAGCTCCTCGGACGCAATCCCTGCGCGCATCCGATCTTCTACGTGCCCGGGGCCAAGCACGACGAGCTCCAGGCCGTCGCGCACTTCATGTATCACGGCGAGGTCGACGTCGAGCTGTCGAAGCTGAGGCACTTTTACAAGGCCGTCGAACCTCTGCAGattcatGGCTTGCAATGGAAAAATACGAAAGAAAAATCTGAGGATAAGGTCAATTCAGATGATTCTGATATCTATAGGATAACTTGtgtctcaaaaaattctgaaaatgcAGATCTCAAGAAAGCACTCCTTGTCCTGTACGACAATGAAGAGATGATCGATATGACTCTGGCCTGTGACGACGGCTCTTTCAAATGCCATAAAGCTGTTGTGACTGCATGTAGCGATTATGTGAAAAACGTTTTGGTTGATTCGTGCAAAGATCCAGTTATCTTTCTTCTTGGTACCAAAAAACGAGAATTGGAAGCTATAATTGATTTGATGTACAATGGGAGAATCAAAGTAAGAAAATCGGATGTTCGAAGGGTCGTAGACATTGCTGATCAATTATTCATTCGTGATTTATCAGTAAAATCTATGTTGACCAAGGAAAAggataatgaaatttttccagaaCATAACTCAGAGAATGAGAATAATGATTCAAGATTAAATACATTTGATCACTATCATGAAAAGAACCCAGATGTTTCTAGTTTCTGCCCAAATGTAGCAAAGGCATTTGATACTCCTCCCgtaattatatttgattgggAAAAACTTTTACAGGAAAAAAGTGAAGGTACCCCTCGACGATCATATGGAAGTAGTGAACGCCAAAATGTATTGGATGCTGTGAATCGTGGAATGTCGGGTGCACAGGCTTCGAGACTATTTGAAATACCAAAAAGTACAGTTTACTCttggttaaaaaaatctgaacgACTAAATACAAGTAAAAGCTCTGCAGTTCTGAATGAATCTTCATCAGGAACTGCACGAAGATCTTACTCAGATGCAGATCGTCAAAAAGTTGTGAGAGCTATCGGGAGTGGAATTTCCGTGGCAGAGGCTGCCATAAAATTCGATATACCTAAGAGTACACTGTATTCTTGGATAAAGAAATCAGACACCTTAGATACCAGTAAAAGCTCTGCAGTAGTCAACTCATCTCCATCTTCTTCAAGTACTACTCGAAGATCTTATTCAGATGCAGATCGTCAAAAGGTATTAAACGCTGTTAGTAGTGGAATATCTGGTGCAGAAGCTTCCAGGAAATATGATATTCCTCAGAGTACAGTTTATTCTTGGGTGAGGAAATCAGATGACTACTTAAACACCAGTAAAAGCTCTGCACTTGTCCAATCACCTCCATCAAGCAATTCTAGACGATCGTATTCAACTGCTGAAAAACAAAGTGTAGTGAATGCAGTCAACAGTGGCATGTCTGGTGCGGAGGCTTCGAGAAAATATGATATACCATCAAGTACAGTTTACTCTTGGATTAAGAAGTCAGAAAATCCGGATGCAAGTAGAAGTTCTATAAGTTCATCTGTGGATACCTCATATTCTTCTGCATCTGGAAGACGTTCGTATACACCAAGCGAGCGTGAAACTGTCGTCAATGCCATTGCTAATGGTATGAGTGGAGCTGAAGCTGCTAGGACTTATGGAATTCCTTCGAGTACTGTTTATTCATGGAAAAATTCTGTGCCAGCCACCTCTACTACGAATTACAACCGTCAATCAAATACCTCTTATGTTTCGTCGAATACTTCGTACGGAGcttcaaatatttcatatgGATCTTCAGGTAATGAAAGCATtgatgttataaaaaatacagtgTTATAG
- Protein Sequence
- MSEKTPQHDLVRRIQLKEDPYPKDDIMKLLRETEPSATLCCEFGSVSCHKDILAARSAHLTELLGRNPCAHPIFYVPGAKHDELQAVAHFMYHGEVDVELSKLRHFYKAVEPLQIHGLQWKNTKEKSEDKVNSDDSDIYRITCVSKNSENADLKKALLVLYDNEEMIDMTLACDDGSFKCHKAVVTACSDYVKNVLVDSCKDPVIFLLGTKKRELEAIIDLMYNGRIKVRKSDVRRVVDIADQLFIRDLSVKSMLTKEKDNEIFPEHNSENENNDSRLNTFDHYHEKNPDVSSFCPNVAKAFDTPPVIIFDWEKLLQEKSEGTPRRSYGSSERQNVLDAVNRGMSGAQASRLFEIPKSTVYSWLKKSERLNTSKSSAVLNESSSGTARRSYSDADRQKVVRAIGSGISVAEAAIKFDIPKSTLYSWIKKSDTLDTSKSSAVVNSSPSSSSTTRRSYSDADRQKVLNAVSSGISGAEASRKYDIPQSTVYSWVRKSDDYLNTSKSSALVQSPPSSNSRRSYSTAEKQSVVNAVNSGMSGAEASRKYDIPSSTVYSWIKKSENPDASRSSISSSVDTSYSSASGRRSYTPSERETVVNAIANGMSGAEAARTYGIPSSTVYSWKNSVPATSTTNYNRQSNTSYVSSNTSYGASNISYGSSGNESIDVIKNTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482569;
- 90% Identity
- iTF_01482569;
- 80% Identity
- iTF_01482569;