Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010001200.1:56354-59076[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.3e-05 0.00098 19.4 1.0 1 23 526 549 526 549 0.96

2 6 9.5e-05 0.004 17.4 0.7 1 23 555 578 555 578 0.96

3 6 2.5e-05 0.0011 19.3 1.2 1 23 584 607 584 607 0.98

4 6 3.6e-06 0.00015 21.9 1.2 1 23 613 636 613 636 0.97

5 6 2.7e-06 0.00012 22.3 1.8 1 23 642 665 642 665 0.95

6 6 1.8e-06 7.6e-05 22.9 1.4 1 23 671 694 671 694 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.3e-05	0.00098	19.4	1.0	1	23	526	549	526	549	0.96
2	6	9.5e-05	0.004	17.4	0.7	1	23	555	578	555	578	0.96
3	6	2.5e-05	0.0011	19.3	1.2	1	23	584	607	584	607	0.98
4	6	3.6e-06	0.00015	21.9	1.2	1	23	613	636	613	636	0.97
5	6	2.7e-06	0.00012	22.3	1.8	1	23	642	665	642	665	0.95
6	6	1.8e-06	7.6e-05	22.9	1.4	1	23	671	694	671	694	0.98

Sequence Information

Coding Sequence: atgtcttcATCTGTGACATCGTGTTTCAAGtgtcaaattaattttggcTGTGAAATTACCTTGGAATTTCACCAATTGATGTTCCATTTCGAATCGGATGATAAACTTGAGTCACATGTGTACCTCGATCCGCCGTTAACAGAAACATTACATCAGGATGTAGGCGAACAAATTCCATCCTCTGATCCAAATCCTTGTAAAGAGTCACAAAATGAAATCGACGATTCCGATTGGACCATATTTAATGAAGTTCCAAGTACAGAAGCAGATTGTGAACTTGATTCATATATGGACTTCGATCCACAGTTAACCATAAATCAAGATGTACAGGAGGATGTGGGTGAACAAATTTTGACAACTGAACCATATCTTTGTAAAGAGTTACGAAATGAAATCGACGATTTCGATTGGACTACATTTAATAAAGTTCCAAGTACAGAAGCGGATTGTGAAATTGATTCATATATGGACCTCGACCTACCATTAATCGAGCATCAATATGTACAGGATGATGTAAGCGAACAAATTTTGACCACTGAACCATATCTTTGTGAAGAGTTACAAAATGAAATCGACGATTTCGATTGGACTACATTTAATGAAGTTCCAAGCACTAAAACGGATTGTGAACTTGATTCATATATGGACTTCGATTTACCGTTAATCGAACATCAATATGTACAGGAGGATGTAGGCGAACAAGTTCTATCCTCTGAACCGAGACCCTGTGAAGAATCACAAAATGAAATCGACGATTTCGATTGGACTACATTTAATGAAGTTCCAAGTATAGAAGCGGATGGTGAACTTGAGTCATATATGGGTCTCGATCCACAGTTAACCATACATCAAGATGTACAGGAGGATGTAGGCGAACAAATTTTGACAACTGAACCATATCTTTGTGAAGAGTTACAAAATGAAATCGACGATTTCGATTGGACTATATTTAATGAAGTTCCAAGCACTGAAACGGATTGTGAACTTGATTCATATATGGACTTCGATTTACCGTTAATCGAACATCAAGATGTACAGGAGGATTTAGGCGAACAAATTTTGACAACTGAACCATATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATTGGACTACATTTAATAAAGTTCCAAGTACCGAATTGGATTGTGAACTCTATTCATATATGGACTTCGACCTACCGTTAATCGAACATCAAGGTGTACAGGAGGATGTGGGTGAACAAATTTTGACAACTGAACCATATCTTTGTGAAGAGTTACAAAATGAAATCGACAATTTCGATTGGACTATATTTAATGAAGTTCCAAGCACTGAAGCGGATTGTGAACTTGATTCATATATAGACTTTGACCTACCGTTAATCGAACATCAAGATGTACAGGAGGGTATAGGCGAACAAGTTTTGGGTTCTACACCAAATCTTTGTAAAGAGTCACAAACAGAAAGTGATGATTTTCATCAGACTTTATTTATCAATGTTCCAAGAACTGAAGTCTGTTGTGATCGTGAACAAAgtaaacaccaaaaaacagctCAAAAAAGGTTTTACGGAGGACGAAAGGATTACGAGTGCGACGTGTGTCAGAAAACATTTTCGAGTAAGAGCTATACAAAGATGCACATAAAAGCAGTTCACGAAGGACAAAAGAACTTCGAGTGCGACGTGTgtcagaaaatattttcgagtAAGAGCTATACGAAGATGCACATAAAAGCAGTTCACGAAGGAGAAAAGAACTTCAAGTGCGACGTGtgtcagaaaaatttttcacaaacgATCGtcttaaaaaaacacataaaaacagttcacgatgAACAAAAGGACTACGAGTGCAACGTATGCCATAAAGCATTTACACGGCAGGACATCTTAAAAAGACACATAAAAATAGTTCACGATAAACAAAAGGACTACAAGTGTGACGAGTGTCACAAAGTATTTTCAGAAAAAGGCAACTTGAAGCAACACAAGAACGCAGTTCACGAAGGACAAAAGAATTTTGAGTGCGACTTGTgtcagaaaacatttttacagcAAAGCAACTTGAAAagacacataaaaacagttcatgacaAATAA
Protein Sequence: MSSSVTSCFKCQINFGCEITLEFHQLMFHFESDDKLESHVYLDPPLTETLHQDVGEQIPSSDPNPCKESQNEIDDSDWTIFNEVPSTEADCELDSYMDFDPQLTINQDVQEDVGEQILTTEPYLCKELRNEIDDFDWTTFNKVPSTEADCEIDSYMDLDLPLIEHQYVQDDVSEQILTTEPYLCEELQNEIDDFDWTTFNEVPSTKTDCELDSYMDFDLPLIEHQYVQEDVGEQVLSSEPRPCEESQNEIDDFDWTTFNEVPSIEADGELESYMGLDPQLTIHQDVQEDVGEQILTTEPYLCEELQNEIDDFDWTIFNEVPSTETDCELDSYMDFDLPLIEHQDVQEDLGEQILTTEPYPCEESQNEIDDFDWTTFNKVPSTELDCELYSYMDFDLPLIEHQGVQEDVGEQILTTEPYLCEELQNEIDNFDWTIFNEVPSTEADCELDSYIDFDLPLIEHQDVQEGIGEQVLGSTPNLCKESQTESDDFHQTLFINVPRTEVCCDREQSKHQKTAQKRFYGGRKDYECDVCQKTFSSKSYTKMHIKAVHEGQKNFECDVCQKIFSSKSYTKMHIKAVHEGEKNFKCDVCQKNFSQTIVLKKHIKTVHDEQKDYECNVCHKAFTRQDILKRHIKIVHDKQKDYKCDECHKVFSEKGNLKQHKNAVHEGQKNFECDLCQKTFLQQSNLKRHIKTVHDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01481675;
90% Identity: iTF_01481675;
80% Identity: iTF_01481675;