Tbra008240.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- Ankrd61
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000657.1:452483-484939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.4e-05 0.0019 18.5 0.1 3 23 892 913 890 913 0.95 2 9 8.2e-05 0.0035 17.6 2.3 3 23 920 941 918 941 0.93 3 9 7.2e-05 0.0031 17.8 0.5 1 23 949 972 949 972 0.93 4 9 0.0082 0.35 11.3 2.0 1 23 977 1000 977 1000 0.94 5 9 5.5e-05 0.0024 18.2 0.2 1 23 1015 1038 1015 1039 0.95 6 9 0.0023 0.099 13.1 0.8 1 23 1043 1066 1043 1066 0.88 7 9 0.059 2.5 8.6 3.7 3 23 1073 1094 1071 1094 0.87 8 9 3.6e-05 0.0016 18.7 0.4 2 23 1100 1122 1100 1122 0.90 9 9 0.096 4.1 8.0 0.1 5 23 1131 1150 1130 1150 0.87
Sequence Information
- Coding Sequence
- ATGGAAATGACAAGCTGCCGAACGAACGTCACCGTCGATGCCACCAGATCGATAGAAGACGCATCTAGCGATTCTCACTCTTGTGACAATTCCAAACTGACTGAAATAATCCCTCATTTCTTCCTCAAAGAACCCATGCGGCATGTGGCCAACATAAATGAGACCCCGATTATATGTGTCGTGTGCGTTCAATTGGGTGCGGATCACAGCAGGCCGTGCGCTGCACTGTCAGCGATCTCAGCGTTGCGACAACTATTGGAGCAATCAGCTCCAGCGCAATGTTGGCAAGCTATGGTACAAACCAATCCATGCTTACGGCAGCCGCACATATTTGTGCAATCATTTTTGCACGAGCAAAAAATAAGTTCTAAGATGCTTGGTGGACCTGGTGgGCCAATAGAACGAGCGTCGACTGGAACGACGATCAGCTTCCCGAGCTCCGAGACATCTTTCAACCCAGAGAGATCGAGCATCTCCTCCTCATCCGACTCGGTGGATTTAATGAGCGGCTTCCAACACCACCAACGAGGACAGCGATTCATCAAGTTCGCGCTCGcgaccggctacaaggacacGCCCGAGATGGAGGAAGAAAACGGCAACGAGCAGCAGCCACTGCTGCGTCGCACCACGGCGATACATCGCGCGGCCAGATACCACAGCCCGATTAATCACACGGCGATCGGCGAGCTCTTCAAAGCGTACGACAGGTACGACGCCAATTACATCGACGAGTGGGGTTACACgcattttcacgcggcctgcgAGTACGGCTTCGTggacgtcgtcgagaaattcctcgacgCCGGCCAGGATCCCGACTGCCGCCTCGTTGCCACTGCGACGCCGAAATCGATCGTCGATCCACCGCTGCATCTGGCGCTGGCCTGGGGATACAAGGACGCGATGGCGTCGCTGCTGAGACGAGGCGCCGATGCGAACTCGCTCAATCAGGACGGACTGACGGCTCTGCAGATGATTTGCCAGGGATACCGTCATCTTCATTTGCTGAAGATATTCAGGGTCGACCCGGATAAGTATCAGCCGTTACCCGTGGGCCCTCTGGACAGGATAGGCCGGGCGCCCTATCACGTGGCTCTGGGCTACCACAAACAAGAATCAATGATACGATTGCTGCTGGAACACGGCGCCGATGTCAATCAAGCCGACGCGGACGGATCGACTTCGCTGCATATGGTCTGCAAGAGAGAACGAGATGTCGCTCGAGGCTTGATGATTATGCTAATCAAGAGCATCGACGACTTTGAGCTGACCGTGCGGTTCGACGCCCGAGACAACTCGGGCAACACGCCGTTACACTTGGCCCTGGAACACGTCAACAACGATGCGGCCGAGCTACTGCTGGaacgtggcgccgatccgaacatAGCCAACGCGGAGGGATCGACTTGTCTGCACGTCGTCTGCAAGAATCTCAGGAGCGATTACAATGCGGCGGAGATGTTGTTCGAGGCGAGGCACGACAACGAGGATCGTCCGTTGCGGATCGACGCACGGGACAatttgggccggacaccgctgcaatgggccgtggcgaatctcaAGCTGGGCGTGCTCAAGTCTCTACTGCAGTTTTTTGGCGCGGACGCGGCCAAAAACTTCGTTTTTCCCGACGCGAGTTACTTCGGCGAGCAGTTCGACCCGAAGGACGACGAGGATCGGGGCGATATCGTGCTGGGACTGGCCTCGCGAGCTCTGGCCGTGGTCGAGTGCCTCGAGAAAAGCGGATCGTACGAGCTGGACCGTAGCGGCGTCCTGGCGATCGCGACGTTTTTCGTCAAGCATCGATTGTTCGAGAAGACGGCGGAGGTCAAAAGacgttggtacgacgacgaccggAATTTCGCCGAAAAGGCCAAGAAAAAGATGGTCAATCCGAGTCTGACGCTGTACGACTTGATCCAACTGCGAGCCGAGGATGCGGCCAAACTGCTCACCTACGAGGACTACCTGAAGTTCGGACGCTCGAACAAGTTTTGGAAACTGCCCGAGGGACCTCGCGAGACCTGCGCGtggcatctgtgcgagaagcTGGccagaggatttttccggccCTGGGCGCTGCAGCCTTTGATGGAGCTGACGCGCAACGAgttgccgattctctgctgcgagaTGATCGTCGATCGACTGGGCAACGAAGATCTGTGTAACGTGTGCTTGGCGACCGGTAACGTCGATGGATGCACGACACGCGTGGAGAGAATAAACTGCATCGCGCGGCTGCGTCGCAAGTGTCGAGGACAAAACGCTCGAATTACGGAGGCGCTCGCGCACGATGCAcaaagagaTCAGTTTGCCACGAGCGCCCGCCGATCAGGCCAACACGACGGTTGCTCGTCCCCACTTTTGGGCACTCTGCAGAAAGCGTATAAATACCGGCCTCCTCAGAGGCAAGAATCAGTCTCAATACTCAGTCGAACCAAGACAaCCGAAAGTGAACTCGATGACAAAATGGAAATAGTTTTTAAACGCGGAGATGCCAATCCCGATAATTCAATAACAGCTAAAAATACAAAGGATAGCGACGGCTACGAAACTCAAAACGCAATCAAAGCCGTCGCGGACGAAGTgaaactgaaattttttcgcgatCTCGAGCGTGAACTCGTCGaacgaaataaaagaagaagactcGATACGATCATCGCGTGTGAACTGTGCGGCAAGAAATACTCGAGCACGGGCAATCTGATCAGGCACATCGAGTCGTTTCACTGCCGTTTCAGCCACCTGTGCGACAAGTGCGGCAAGACGTTTTCGCAGAGAGTCACTCTCAAGACGCACTTCGCTACGGTGCACAACGCGAAAGACGATACGACCTACGAGTGCGCGACGTGCGTCAAGAAATTTTCGAGCAAGAGCAGTCTCGAAAGGCACGTCGGGTCGTTGCATCGGGGTATCGGCCACTCGTGCGACTCGTGCGAAAAGACGTTCACGAGAGGGCAATATCTCCGGAGCCACGTCGATAAGGTGCACCGACACGGTGTCCCAACGAAGGACGATCGCAACGGCGCGAGGTATGTGTGCGACGCCTGTGGAAGGATATTCACGCGCGAGGGTAATCTCAAGAATCACGTGGCTTCGGTGCACCACGGGCTGGGCCACTCGTGCGACCCGTGCGGAAAAAAGTTCACGAGAAGCAACTATCTTCGAGACCACGTGGACGCGGTGCACAACGGCCTCATCCACTTGTGCGACAGATGCGGCAAGAAATTTTCAAGCAGAGAGTATCTGAGGTGTCACATCGACGGCTCACACGAAGGCGTCGCGAATACCTGCGACGAGTGCGGAAAGACGTTCGCCACGAGGAAGAGTTTGAAGGTCCACGTAGACGCGAAGCATTGGGGTGTCGCGCGTCCCCGCGATACCTGCGGAAGGGAGTCCAAGAGTAAGGGACAGCTGAAACGACACGTGGACGCGGTGCACAGAGATGAGGAGCAATCTCAAGGCTCATGGTCACCCACATCTACATTGGTACACGAATATCGATTCGTTtctctatattatatgaaCTTGGCTCCAGATATGCTCAATTTCCTCGGACAGAGACTACCAACTTTGGAGCATATCTATAGTTTCCTTCGGATTCTCTCGCGTGTAACGCGTGAGAAAATTGTCAACGACGATGGACATCGAGAATATTATCGAGACTATCTGTTCTGTTACTTTTCACGAGTTACTCCCTCGCGAGCGCGAACCCGCGCCGGTTTTCAGCCATTACCGTCTA
- Protein Sequence
- MEMTSCRTNVTVDATRSIEDASSDSHSCDNSKLTEIIPHFFLKEPMRHVANINETPIICVVCVQLGADHSRPCAALSAISALRQLLEQSAPAQCWQAMVQTNPCLRQPHIFVQSFLHEQKISSKMLGGPGGPIERASTGTTISFPSSETSFNPERSSISSSSDSVDLMSGFQHHQRGQRFIKFALATGYKDTPEMEEENGNEQQPLLRRTTAIHRAARYHSPINHTAIGELFKAYDRYDANYIDEWGYTHFHAACEYGFVDVVEKFLDAGQDPDCRLVATATPKSIVDPPLHLALAWGYKDAMASLLRRGADANSLNQDGLTALQMICQGYRHLHLLKIFRVDPDKYQPLPVGPLDRIGRAPYHVALGYHKQESMIRLLLEHGADVNQADADGSTSLHMVCKRERDVARGLMIMLIKSIDDFELTVRFDARDNSGNTPLHLALEHVNNDAAELLLERGADPNIANAEGSTCLHVVCKNLRSDYNAAEMLFEARHDNEDRPLRIDARDNLGRTPLQWAVANLKLGVLKSLLQFFGADAAKNFVFPDASYFGEQFDPKDDEDRGDIVLGLASRALAVVECLEKSGSYELDRSGVLAIATFFVKHRLFEKTAEVKRRWYDDDRNFAEKAKKKMVNPSLTLYDLIQLRAEDAAKLLTYEDYLKFGRSNKFWKLPEGPRETCAWHLCEKLARGFFRPWALQPLMELTRNELPILCCEMIVDRLGNEDLCNVCLATGNVDGCTTRVERINCIARLRRKCRGQNARITEALAHDAQRDQFATSARRSGQHDGCSSPLLGTLQKAYKYRPPQRQESVSILSRTKTTESELDDKMEIVFKRGDANPDNSITAKNTKDSDGYETQNAIKAVADEVKLKFFRDLERELVERNKRRRLDTIIACELCGKKYSSTGNLIRHIESFHCRFSHLCDKCGKTFSQRVTLKTHFATVHNAKDDTTYECATCVKKFSSKSSLERHVGSLHRGIGHSCDSCEKTFTRGQYLRSHVDKVHRHGVPTKDDRNGARYVCDACGRIFTREGNLKNHVASVHHGLGHSCDPCGKKFTRSNYLRDHVDAVHNGLIHLCDRCGKKFSSREYLRCHIDGSHEGVANTCDECGKTFATRKSLKVHVDAKHWGVARPRDTCGRESKSKGQLKRHVDAVHRDEEQSQGSWSPTSTLVHEYRFVSLYYMNLAPDMLNFLGQRLPTLEHIYSFLRILSRVTREKIVNDDGHREYYRDYLFCYFSRVTPSRARTRAGFQPLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481676;
- 90% Identity
- iTF_01481676;
- 80% Identity
- iTF_01481676;