Tbra004097.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- Nep1
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001109.1:119450-156372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.059 2.5 8.6 1.7 3 23 1085 1106 1082 1106 0.97 2 10 2.9e-05 0.0012 19.1 1.5 1 23 1124 1147 1124 1147 0.97 3 10 0.00014 0.0059 16.9 1.2 1 23 1153 1176 1153 1176 0.96 4 10 2e-05 0.00084 19.6 1.4 1 23 1229 1252 1229 1252 0.98 5 10 0.00055 0.023 15.0 2.4 1 23 1258 1281 1258 1281 0.96 6 10 0.0053 0.22 11.9 2.6 1 23 1290 1313 1290 1313 0.94 7 10 7.3e-05 0.0031 17.8 1.0 1 23 1319 1342 1319 1342 0.97 8 10 5.3e-05 0.0023 18.2 2.5 1 23 1348 1371 1348 1371 0.98 9 10 9.8e-05 0.0042 17.4 2.3 1 23 1377 1400 1377 1400 0.98 10 10 9.9e-06 0.00042 20.5 1.2 1 23 1406 1429 1406 1429 0.97
Sequence Information
- Coding Sequence
- atgaaattttggaagttaattttttcaaaactgtgctttgacttatacattTACTctgactttgtcacttgcagatttagaCACTCGCGATCTAGCGGACCCGTGGCGTCAGAGCGGCTGGAGCAATCCGTGGAAGAGCAAGGGCTGGCAGATCGATCCCTGGCAGAAGAAGCAAGCCTGGAATCCCTGGAATCCTTGGCAATCCGCTCACCATCACGAGCCCGAGCATCACCACCAGGAGATCCACGTGGCTCAGCCTCATCCGATCCCGCCGCTGCACCCCAAGCCGCTCCATCTCAAGGTGCACAGCGAGTCCACCAAGATCCACTACGATCATCCGCACATCCCCCATCCCCATCTCATCGGCTACGAGAAGTACCACGAGCCCGAGATCGAGGTCAAGCCCGTGCATCACGGACACGGCTGGGAATGAAGCTCATTAtattatcgacgatcgaaaaatttgaactTTCGTCGTCGCGTAAATGTCGATACAACGTTCGAGCGTCCAAATTGCTATACACTCCACGTGTTTATAATGTATTCCAATGCAGTCCGCAAGTCTCTGCGCAATTACGGAATTCTATTCGCGACCCCCGCTACAATTCGAAATTCCACGAAAAAGCTCGCCGCTCGAGGGGCAGAAGAAAAAGTTCGGCCTCTTTTCCTCTTCGGATACCGTCGCGTCACGCGAACCATCGCGAGCaagtatttttctctcttaccGAAGCTCCGCGCGCGATACACAGGCGCAacCCCGAAGACGAGGACgatgacgaggacgacgaggacgacgacgacgacgatgaagatCGGTCcgctacggccgccgccgctgcggaAGCTGCAGCTGGAGACGACGGCAGTTACAGAAACGGGGattcaCAATCGGCGCTGGCCGTCAACGTCAACGACAGCGCGAGCAAGAGGAAGCTGGTCGAcgtgaaatcgaaaaaatctttCTTCAAGAAGCATCGTAGAAAATTGTCGCTGCTCTTCATCGCGTTACTGATCGGCGCTCTGACGATAGCCTGCCTGACGCTCGGCGCCATGTACCCAACGACGAATATCACTCGTATTCGATTATTTACATTACGCGTTCCGTATCGTAGATACGTGTGCGGCAGATGGCCGGAGGTGCATCCCTCGCTCGATCTCAGCCAGGAGCACAGCTGGTTCAAGGAGCGAAGCGTACGTCTGTCGCGACGCATACTCGACCTCATGGTGCAGAACTTCACCGAGCTCAAATCGGACGTGCCCTGGCCCGTGCACGAGGCCCAGCTGCTGTTCGCCAGCTGCCTCGACGTCCAGGCCCAGTACAAACTGGGCCTCAAGCCTCTCTTCGATTTGTTGGCCGAGCTGAAGCTGCCACGAGTACCTGCCGCGATCAAGCCGAGGCAAAAAGgtgacgaagacgacgacgactacaaTGACGATTTCGTCAAGCAGATGGCACGGGTCAAGAGGATGCTCTGGTCCGACGCGTTCTTCGGCCTGCAGGTCTACGCCGATCCGCGCGACAACAGGCAGAAGTTACTTGCCTTCGATTTGCCGGATCGCGACACGCCCTTCCCGAGCGACAAGATCCTGGAGAAGAGGCTGAGGCAGGTGCGCGAGCGGGCGCGCCGCCGCTTCTtgatcaacgacgacgagcagcaggCCGGCCAAGGCGAGGAGGCCGAGGACGACAAGACTCGAGCCCGAGGCATGAGCGGCAACGAGGCCTTCTCCGCGTCGGAGAAGTTGTACATGGCCGAGGTGCTCAAGCAGATCATCAGCAACGGGACGAGCGAGTCGGCCACCTGCAAGACGCGCCACGAATTCGACATCGTGCCCGAGGCCGAGATTACCGATCTCGTGGATCGGGTCTTCAATCTCAGCGGTGTCTTTTACAAACTGTACACTAAATACACGaacgcgtcgtcgtcctcgagtGACTCCAGCGAGGAGCCAGAGGAGGTCGATGACGAGGACTACATGCTGCTGGACGAGTTGCAGCGGCTAACCGACGACTACGTGAGATCCGTCAACGAGTCGATCGTGCCGAGGCCACTGTGGCGACCCTTCGTCGAGGAGCTGCTCCGAGGGCTGGAGATCGACTTCGATCCGGCCCAGCAGAAGGTCTACGTCGGAGATCTCGAGTTTCTGCAGGAGATCGCGCTCGTGTTGTCGTCGACGGACAAGCAGATCTTGGAGACGGCAGTCTGGTGGATGGTCGTCGACTACTGCGTGCCCCACACGTCCGAGGAGCTGCGCAAGATCTGGAACCTCTACGTGAACGACGTGACGGGCCTGGGCCAGGATCATCGTGGCTGGTCGGTCTACTGCACGGACACGGTCAACGAGCTGATGGGCATGGCCGTGGCCTGGCTCGTCGTAGAGCCCGCCTTCGCGCGGGACGGCTCGCGCGACAGAGTAGCCGAGATGCTCGACAACATCAAGCGGGCCTTCATGGACTTCGTCCTGGAGGACATCGAATGGATGGACGGGCCCACGAAGGTGGCGACCCTCGAGAAGAATCGCAAGATGAAGTCGCTCATCGGTTTTCCCGATTGGTTGTTCGAGGATGGACGGCTGGACGAATATTACGACGGgATCAATATCACAGAGGATGCCTATTTCAACAATATGCTGCAGATAATACGAGTCAGGAACATAAACGGATTGATGGATTTGGCGGAAAACGGCAccgctgacgacgacgacgacgacgatgctggAGCCCTGAATTATGGAGCTATCGGCAGTATACTGGGTCACGAGCTGACGCACGGCTTCGACAATTCGGGCCGGCGTTTCGACAGCTCCGGCAATCTCAAGCAGTGGTGGAGCAACGAGACGATCGCCCGATACACGGACAGGGCGGCCTGCTTCGTCGAGCAGTACGACAAGTACTACCTACCAGAGGTCGACGAATACATCGACGGTGAACTCACGCTTGGTGAAAACATCGCCGACAACGGCGGCCTGCGAGAGGCCTACAAGGCCTATCAGTTGTGGAAGTCCAAGCACGGCGACGAGCCGCTCCTACCCGGCTTCAGCAATTTCACTCACGAGCAGTTGCTCTTCATGAGCTACGCGCACATGTGGTGCGAGTCCTATACCAGCTACGCACTGGTATGGATGCTGCAAGACAGCCACTGTCCCGGCCACGTGAGGCTGCAGCAGGCGCTGCGCAATTCCGAGCACTTCAGTCGGGCCTTCAGCTGTCCCGTGGGCTCGCCGATGAATCCCAAAAAAAAGTGCCAGCTCTGTGACaattgcgggaagaaattgGGAAATAAGCGAAGTTTGCTCATGCATGcgaagacagtccacgagggttgcaaagattttgcccACAACAGCATCCAAgagggtcggaaagattatgcatgtgataagtgtaagaagaaattcggaagtaaattgaatttgatcaggcaccaaaagacTGTACACGAGGGACGCAAatattacgcatgcgacaagtgcgaaaaaatttttggacgaAAACAACATTTGCTCCAACACCAAAGggcagttcatgaaggtcttaaaaattttgcatgcgacagcTTCGAGCTTGAAGGAGTCCATGAATACGTGGTTTTATGCGACAACGAGGAATGCATGCGAATGGGCGAGTGTACGAGGCCAGTGTCGAGTAATTCGACGAGTGCCATAAGAGCTTgtcgaaaagattacacgtgtgataagtgtgagaagaaattcggaagAAAATTGGatttgatcaggcaccaaaagacTGTACACGAGGgacgcaaagactacgcatgcgacaagtgcaaaaaaatttttggacaTAAACCACATTTGCTCCAACACCAAAGggcagttcatgaaggtcgcaaagattttgcatattacttatgtgaaaaatgtGCGAAGAGGTTTGGACATAAACCACATTTGCTCCAACACCAAAGggcagttcatgaaggtcgcaaagattttgcatgtgacaggtgcgagaagaaatttacagaaaaaaagagtttgaccgtacacataaagacagttcacgagcACCGCAAGGATTTCACGTGCGAtagatgcgagaagaaatttggaactaaatcaaatttgtttcTGCACCAAAAGAGAGTTCACTAtcgtcgcaaagattactcatgcgacaaTTGTGAGAGGAAATGTGCgagtaaatcagatttattgaagcaccaaaggatgGTACACGAGGGTcccaaagattacgtatgccagaaatgcgagaaaaaatttggacaaaaatcggatttgtcaaagcaccaaaaaatagtccacgaaggtcgaaaagattatgcATCGAAAAATGTCAGCAAAATCAGTAAAGCGAACGTCGAAAATGTCTTAACTATTTCATTCGGACGTGCAACGATATCATTTTTGGCAAATTCAAACTTTCAGCTTTGTGTGCCAACTGAACTCATCTCTATTTTCATATACGTGTGCGGCAGATGGCCGGAATCGCATCCTATCCACGACGGCTACCAATCGCAAAATTGGTTATTAGAACGACAAACTCGTCTATTGCGACGCATACCCGACCTCATGGCGCAGAACTTCACCGAGCGTATACCAGAAGTACCCCGGGCCGTGAAGGAAGCCCAGATTCTGTACTTCAGCTGCCTCGACGTCCGGGCCCAGTACAAGCTCGGACTTGGGCCACTGTTCGGTTTGTTGGCCGAGCTGGGGCTGCCTCGGGTGCCGAGGCAAATAATTAGTGGCCCGCACGGTGGCAATGACGACTTCGTCGAGCAGATGGCACGGGTCAAGAGGCTGCTCTGGTCCGACATGTTCTTCGGGTTGGAAGTCTACGCCGATCCGCGGGACAACAGGCGGAAGTTACTGGTGCTCGGTTTGCCAGATCGCGACACGCCCTTTCCGCGCGACAAGAGCGTCCTGGAGGAGGGCGATCTAACCAGAagcagcaagagcagcagcgacgccTACTCCGCGATGGAGAAGCTCTACCTGGTCGAGCTGCTCAAGCACATCGTCGGCAACGGGACGAGCGATTCGATCTACAGCTGCAAGTCGCCCAAAAAATTCGACAACTCAACGATGGCCAAGATGACCGATCTCGTGGATCAGGTCGTCAATTTTACAGGGGTCATGAAGAAAATCAACAGTAGATACGCGAACAAGTCGATCAACTTTAGTGAGGAGCCAGAGGAGGTCGATGACGCGGACTACATGCTGCTGGACGAGCTGCAGCGGCTGACCGACGACCACGTGAGATCCGTCAACGTGTCGATCGTGCCGAGGCCACTGTGGCGACCCTTCGTCGAGGAGCTGCTCCGAGGGCTCGAGGTCGACTTCGATCCGGCCCAGCAGAAGGTCTACGTTGACAATCTCGAGTTTCTGCAGGAGATCGCGCTCGTGCTGTCGTCGACGGACGAGCAGCTCTTGGAGACGATGGTCTGGTGGAGGGTCGTCGAGCACTGCGTGCAACACACGTCCTGGGGGCTGCGCAGAATCTGGAATATCTTCTTCAAGGACGAGACGGGGCTGGGCCAGCGCGAGGCCCGCTCGATTCACTGCTCGGAATCGGTCAACGAGCTGATGGGTATGGCGGTGGCATGGCTCTTCGTCGAGCCCACGTTCTCGCCCGACCACGTCGCCGAGATGCTCGAAAACATCAAGCGTGCCTTCATGGATTTCGCGCTGAAAGACATCGACTGGATGGACGAACCCGCGAAGGTGGCGacgctcgaaaaaattcgcaagatGAAGTCGCGCATCGGTTTTCCCGATTGGCTGTTCGAGGATGGACGGTTGGACGAGTATTACGAAGGGATCGACAAGTACGTCAACGGCAAGCTCACGCTTGGCGAGAACATAGCCGACAACGGCGGTCTAAGACAGGCCTACGAGGCCTATCGGATCTGGAAGTCCAAGCACGGCGACGAGCCGCTGCTACCCGGCTTCGGCAATTTTACGCACGAACAGCTGTTCTTCCTGAGCTACGCGCACGTAAAAAATTACgttattttgttataa
- Protein Sequence
- MKFWKLIFSKLCFDLYIYSDFVTCRFRHSRSSGPVASERLEQSVEEQGLADRSLAEEASLESLESLAIRSPSRARASPPGDPRGSASSDPAAAPQAAPSQGAQRVHQDPLRSSAHPPSPSHRLREVPRARDRGQARASRTRLGMKLIILSTIEKFELSSSRKCRYNVRASKLLYTPRVYNVFQCSPQVSAQLRNSIRDPRYNSKFHEKARRSRGRRKSSASFPLRIPSRHANHREQVFFSLTEAPRAIHRRNPEDEDDDEDDEDDDDDDEDRSATAAAAAEAAAGDDGSYRNGDSQSALAVNVNDSASKRKLVDVKSKKSFFKKHRRKLSLLFIALLIGALTIACLTLGAMYPTTNITRIRLFTLRVPYRRYVCGRWPEVHPSLDLSQEHSWFKERSVRLSRRILDLMVQNFTELKSDVPWPVHEAQLLFASCLDVQAQYKLGLKPLFDLLAELKLPRVPAAIKPRQKGDEDDDDYNDDFVKQMARVKRMLWSDAFFGLQVYADPRDNRQKLLAFDLPDRDTPFPSDKILEKRLRQVRERARRRFLINDDEQQAGQGEEAEDDKTRARGMSGNEAFSASEKLYMAEVLKQIISNGTSESATCKTRHEFDIVPEAEITDLVDRVFNLSGVFYKLYTKYTNASSSSSDSSEEPEEVDDEDYMLLDELQRLTDDYVRSVNESIVPRPLWRPFVEELLRGLEIDFDPAQQKVYVGDLEFLQEIALVLSSTDKQILETAVWWMVVDYCVPHTSEELRKIWNLYVNDVTGLGQDHRGWSVYCTDTVNELMGMAVAWLVVEPAFARDGSRDRVAEMLDNIKRAFMDFVLEDIEWMDGPTKVATLEKNRKMKSLIGFPDWLFEDGRLDEYYDGINITEDAYFNNMLQIIRVRNINGLMDLAENGTADDDDDDDAGALNYGAIGSILGHELTHGFDNSGRRFDSSGNLKQWWSNETIARYTDRAACFVEQYDKYYLPEVDEYIDGELTLGENIADNGGLREAYKAYQLWKSKHGDEPLLPGFSNFTHEQLLFMSYAHMWCESYTSYALVWMLQDSHCPGHVRLQQALRNSEHFSRAFSCPVGSPMNPKKKCQLCDNCGKKLGNKRSLLMHAKTVHEGCKDFAHNSIQEGRKDYACDKCKKKFGSKLNLIRHQKTVHEGRKYYACDKCEKIFGRKQHLLQHQRAVHEGLKNFACDSFELEGVHEYVVLCDNEECMRMGECTRPVSSNSTSAIRACRKDYTCDKCEKKFGRKLDLIRHQKTVHEGRKDYACDKCKKIFGHKPHLLQHQRAVHEGRKDFAYYLCEKCAKRFGHKPHLLQHQRAVHEGRKDFACDRCEKKFTEKKSLTVHIKTVHEHRKDFTCDRCEKKFGTKSNLFLHQKRVHYRRKDYSCDNCERKCASKSDLLKHQRMVHEGPKDYVCQKCEKKFGQKSDLSKHQKIVHEGRKDYASKNVSKISKANVENVLTISFGRATISFLANSNFQLCVPTELISIFIYVCGRWPESHPIHDGYQSQNWLLERQTRLLRRIPDLMAQNFTERIPEVPRAVKEAQILYFSCLDVRAQYKLGLGPLFGLLAELGLPRVPRQIISGPHGGNDDFVEQMARVKRLLWSDMFFGLEVYADPRDNRRKLLVLGLPDRDTPFPRDKSVLEEGDLTRSSKSSSDAYSAMEKLYLVELLKHIVGNGTSDSIYSCKSPKKFDNSTMAKMTDLVDQVVNFTGVMKKINSRYANKSINFSEEPEEVDDADYMLLDELQRLTDDHVRSVNVSIVPRPLWRPFVEELLRGLEVDFDPAQQKVYVDNLEFLQEIALVLSSTDEQLLETMVWWRVVEHCVQHTSWGLRRIWNIFFKDETGLGQREARSIHCSESVNELMGMAVAWLFVEPTFSPDHVAEMLENIKRAFMDFALKDIDWMDEPAKVATLEKIRKMKSRIGFPDWLFEDGRLDEYYEGIDKYVNGKLTLGENIADNGGLRQAYEAYRIWKSKHGDEPLLPGFGNFTHEQLFFLSYAHVKNYVILL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -