Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010000929.1:8538-30107[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.094 4 8.0 2.1 1 23 349 372 349 372 0.94

2 12 1.1e-05 0.00047 20.4 0.9 1 23 378 401 378 401 0.96

3 12 0.00089 0.038 14.4 3.7 1 23 407 430 407 430 0.97

4 12 9.3e-06 0.0004 20.6 1.3 1 23 436 459 436 459 0.98

5 12 0.00018 0.0078 16.5 2.2 1 23 465 488 465 488 0.97

6 12 0.00059 0.025 14.9 1.8 1 23 494 517 494 517 0.97

7 12 3.5e-05 0.0015 18.8 1.5 1 23 523 546 523 546 0.97

8 12 0.72 31 5.2 4.4 1 23 552 575 552 575 0.96

9 12 0.0015 0.064 13.7 5.3 1 23 581 604 581 604 0.97

10 12 5.8e-05 0.0025 18.1 3.8 1 23 610 633 610 633 0.97

11 12 3.3e-05 0.0014 18.9 1.3 1 23 639 662 639 662 0.98

12 12 0.00014 0.0058 16.9 2.9 1 23 668 691 668 691 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.094	4	8.0	2.1	1	23	349	372	349	372	0.94
2	12	1.1e-05	0.00047	20.4	0.9	1	23	378	401	378	401	0.96
3	12	0.00089	0.038	14.4	3.7	1	23	407	430	407	430	0.97
4	12	9.3e-06	0.0004	20.6	1.3	1	23	436	459	436	459	0.98
5	12	0.00018	0.0078	16.5	2.2	1	23	465	488	465	488	0.97
6	12	0.00059	0.025	14.9	1.8	1	23	494	517	494	517	0.97
7	12	3.5e-05	0.0015	18.8	1.5	1	23	523	546	523	546	0.97
8	12	0.72	31	5.2	4.4	1	23	552	575	552	575	0.96
9	12	0.0015	0.064	13.7	5.3	1	23	581	604	581	604	0.97
10	12	5.8e-05	0.0025	18.1	3.8	1	23	610	633	610	633	0.97
11	12	3.3e-05	0.0014	18.9	1.3	1	23	639	662	639	662	0.98
12	12	0.00014	0.0058	16.9	2.9	1	23	668	691	668	691	0.97

Sequence Information

Coding Sequence: atgaaatcttGTAGGGTACCCAAGACTGATTTTTactcttggatttctacgacagTTACAACGCTACATGGATATGTATTCGAACCACTTGTAAAATTTACGGTAACCCGATTGTTATCAGCAAATAGCTCGATTGAAAGAGGCATATGCGTACCCGTCTATTTTACCAACGTCTTAAAGAAGTATTATTGGATATGTTTTAGTTTCACTGTAACATTTGCCATCATAATGTTACTTTCAATCAATACTATGAATTTCTTCCAAGTTATTAcagtaaaatttatcgtcgGAATGCTCTCTGTCATAGGGTATTATCTCGCTTTTCGAGCTTTTCGTATCACCCGCGCAAGAATCGGAGAcatcttcttcgttttttcttttgtttttttttttttaaataaaaaaaagaaaacgagctTTGCTTCGAGTGCATACGTAAGTCTCTCggtgtacattatattatatacggatcgcgcgcgcgtaaaagagCGCGGGCAAGTGTCAGCAGCGATCGTGCACGCGCTGGCGGTCGATTTATATAATGCACTCGCAGCGCTTTGGCCACTACACATACGGCATCGCGCGTCATCCGCTTGGCGCTCTCGCGTCGAGCTAGCcgatactactactacgtatatatatagtatacacgtAACCCGCGTTAAAGATGTCAACTTTTACCTGACTCCAACGTTTggttacatatatacacgcaatATTGATAACACGCAAACGTTTAgaccgccgcagcagcagcagaatcgTGAAATTCGAGGCACACACGGAGAGCTTATATATCGGATTTTACACGCGTCGCgagctattatatatacacacatacactattgtgtgtgcacgcgtatatacgatatagatatatatatagagcctGGGCAAAATTTTGTCAAAGTCATCGGATATTGTTTTCTTTGTGAAAACAATGGAGCTGGCGCGGCGCGGCTCGTGGCGGCGGCTCTGCTCTTGGCGTGTGCGCGATATATGtggcaAATACATCAAAGAACAGTTCATGACGGtcagaaagatttcgcatgtggcaagtgcaaaacaaaatttcggTGTCTGAGCGCTTTGATCCGGCATAATAAAATAGTCcatgatggtcgcaaagattacgaatgtgacaagtgcgataaggtatttggacaaaaaaagcTTTTCTTGAGGCACCAAAAggcagtccatgagggtcgcaaagatttcgcatgcgataagtgcgagctaaaatttggacataaacatAATTTGCTTCTCCACCAAAAAACGGTACACGAAGGCCAGAAAGATTACccgtgcaacaagtgcgagaagaaatttggatataagggatctttgttgaagcaccaaaagacagtccatgaaggtcgcaaagatttcgcatgcgacaagtgtgagaagaaatttggacaaaaactgCATTTGCTCAATCATCtgaagacagtccacgaaaatcgaaaagattttgcatgcgatcaATGCGCGAAGAAATTCGGATCCAAACGGAATTTGCTTATCCATCacaaaacagtacacgaaggtcgcaaagactacgcatgcgacaagtgtgagaagaaatttggacaaaaaccgcATTTGCTCAATCATCtgaagacagtccacgaaggtcgaaaagattttgcatgcgatcaATGCGCGAAGAAATTCGGATGTAAACGGAATTTGCTTCTCCATCAcaaaacagtacatgaaggtcgtaaagattatgcctgccacaagtgcgaaaagaaatttgggcgaAAGCATCCTTTGCTCAGACACTtcaagacagtccacgaaggtcgcaaagattacgcatgcgataactgcgagaagaaatttggacataaatcacatttgcttttgcaccaaaagacagtacacgaaggttgcaaagattacccatgcgacaagtgtgagaagaaatttggacaaaaaggacATTTGCTTggccaccaaaagacagtacacgaaggtcgcaaagattacgcatgcgataactgcgaaaagaaatttggacataaacagCATTTGCTTGTCCACCAAATGACAGTACATGGAGGTCGCAATAAGACTACggatgcgacaaatATTACACGCGAATCTTGTGCTTCTATATCCATTATCCCAAGTTCAAAAGCCACAATAATCAACAAATCAGTTTGA
Protein Sequence: MKSCRVPKTDFYSWISTTVTTLHGYVFEPLVKFTVTRLLSANSSIERGICVPVYFTNVLKKYYWICFSFTVTFAIIMLLSINTMNFFQVITVKFIVGMLSVIGYYLAFRAFRITRARIGDIFFVFSFVFFFLNKKKKTSFASSAYVSLSVYIILYTDRARVKERGQVSAAIVHALAVDLYNALAALWPLHIRHRASSAWRSRVELADTTTTYIYSIHVTRVKDVNFYLTPTFGYIYTRNIDNTQTFRPPQQQQNREIRGTHGELIYRILHASRAIIYTHIHYCVCTRIYDIDIYIEPGQNFVKVIGYCFLCENNGAGAARLVAAALLLACARYMWQIHQRTVHDGQKDFACGKCKTKFRCLSALIRHNKIVHDGRKDYECDKCDKVFGQKKLFLRHQKAVHEGRKDFACDKCELKFGHKHNLLLHQKTVHEGQKDYPCNKCEKKFGYKGSLLKHQKTVHEGRKDFACDKCEKKFGQKLHLLNHLKTVHENRKDFACDQCAKKFGSKRNLLIHHKTVHEGRKDYACDKCEKKFGQKPHLLNHLKTVHEGRKDFACDQCAKKFGCKRNLLLHHKTVHEGRKDYACHKCEKKFGRKHPLLRHFKTVHEGRKDYACDNCEKKFGHKSHLLLHQKTVHEGCKDYPCDKCEKKFGQKGHLLGHQKTVHEGRKDYACDNCEKKFGHKQHLLVHQMTVHGGRNKTTDATNITRESCASISIIPSSKATIINKSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -