Basic Information

Insect: Trichogramma brassicae
Gene Symbol: per
Assembly: GCA_902806795.1
Location: CADCXV010000302.1:63978-96491[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.8e-06 0.00042 20.5 1.1 1 23 1359 1382 1359 1382 0.97

2 11 1.7e-05 0.00072 19.8 1.0 1 23 1388 1411 1388 1411 0.96

3 11 0.0022 0.095 13.1 0.4 1 23 1414 1437 1414 1437 0.94

4 11 0.00041 0.017 15.4 2.8 1 23 1478 1501 1478 1501 0.95

5 11 2.2e-07 9.4e-06 25.7 3.3 1 23 1507 1530 1507 1530 0.98

6 11 1.4e-05 0.00061 20.0 0.9 1 23 1536 1559 1536 1559 0.97

7 11 8.9e-06 0.00038 20.7 2.4 1 23 1565 1588 1565 1588 0.97

8 11 0.018 0.76 10.3 1.5 1 23 1594 1617 1594 1617 0.96

9 11 5.6 2.4e+02 2.4 0.3 5 23 1627 1646 1626 1646 0.94

10 11 9.7e-06 0.00041 20.6 1.2 1 23 1652 1675 1652 1675 0.97

11 11 0.00019 0.0079 16.5 2.2 1 23 1681 1704 1681 1704 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.8e-06	0.00042	20.5	1.1	1	23	1359	1382	1359	1382	0.97
2	11	1.7e-05	0.00072	19.8	1.0	1	23	1388	1411	1388	1411	0.96
3	11	0.0022	0.095	13.1	0.4	1	23	1414	1437	1414	1437	0.94
4	11	0.00041	0.017	15.4	2.8	1	23	1478	1501	1478	1501	0.95
5	11	2.2e-07	9.4e-06	25.7	3.3	1	23	1507	1530	1507	1530	0.98
6	11	1.4e-05	0.00061	20.0	0.9	1	23	1536	1559	1536	1559	0.97
7	11	8.9e-06	0.00038	20.7	2.4	1	23	1565	1588	1565	1588	0.97
8	11	0.018	0.76	10.3	1.5	1	23	1594	1617	1594	1617	0.96
9	11	5.6	2.4e+02	2.4	0.3	5	23	1627	1646	1626	1646	0.94
10	11	9.7e-06	0.00041	20.6	1.2	1	23	1652	1675	1652	1675	0.97
11	11	0.00019	0.0079	16.5	2.2	1	23	1681	1704	1681	1704	0.96

Sequence Information

Coding Sequence: ATGGAACGAGTGCGCGTTGCACTGCCCTTTAGTAAGGTCGGCGTGGACTATGCAGGCCCCTTTCATGTTCGAGCTTTCCATGGACGAGGGCGTACTTCGGTGAAGAGCTACATCGCGGTCTTTGTATGCTTTGTGACCAAGGCAGTACATCTGGAGCTCGTGTTCAAGTGCGATGCTCCATCGTTTATAGCAGCACTGAAGAGGTTCATTTCACGCCGCGGCTATCTGGCCGAGATTTGGAGCGATTGTGGGACGAATTTTGTGGGCGCGGACGCCGAGTTGCGCGCTATGTTTGCTCAGGAATCTGAGCTGGTTAAAGGAGTGATTCGTTTTTCGACCAACCGAGGGATAAAGTGGCGATTCAACCCTCCCGGAGCACCTCACTTCGGAGGACTTTGGGAGGCGGCTGTCAAGTCCACGAAGTTCCACATCCGAAGAGTGGTCGGCGAGGCCAAGCTGACGAGCGAGGAGTTCGAGACGCTGTTGTGTCAGGTGGAGGCCTGTTTGAATTCTAGACCCCTCACTTCACTGGTGGACGACTCTCAGGACGCGCAGCCATTGACTCCGGCGCACTTCTTGATCGGAAGAGCCTCGATTATAATTGCGGAACCACGGCTGACGGAGGACTGCTTGTCGCCCTGTCAGCGTTGGCAACTCGTGACGCAAATGGTTCAGCATTTTTGGGATCGTTGGAGCGAGGAGTACATCCGGCAGCTGCAGCCTCGAGGAAAATGGAGAAAGGACACCCCTGCTCCGAAAGTGGGCGATGTAGTGCTGATTAAGTACGAGAGCACGCCTCCAACTGCCTGGCCACTCGCGAGAGTAACCGAGGTGCACCCTGGAAAGGATGGGGTTGTAAGAGTACTTACTCTGAAGACGGCGACTTCGACAGTCCGCAGACCAGTGGTGAAGTACGCACGCTTAAAAATACTATATCCTTGGACACCAAGCGCGTGTCGCCGTTTTGCGATTTCTTCAAGATCTGCGCGAGATCGCACTTGGATTTCGGATGCGAATCGCAGCACTACGGAAACTATCCCGAAGCTAATTAGcaataaaaaggagaagagtcacaagaagaagaaaaccaAGAATATTATAACGACAACTGCCCTGATAGAGAGCACGCAAGCCCCTAGCAGCTGCACCCAGGCGAAACCCGAGCCAGTGACAAATGCACAAATCACACAACAAGTCTTTGAGCCGGTCAAACCCATTGTCGAAAAGAAAACAGaagaacaAGCAGTTGTAGAGTTGGTGGATGCCACGGATCCAGGAGTTCACAATGACAGCAACACCTCGCTACCCACGACGGCGACAGACGCCGCCGGATTGGCCGCAAAAATTAATCCCATCGACGAGTCCAGTTCACAATTCACCGTTaAGCCAGAAGAAACAATAATACCCACGATATTCAGTACGCGCCACAACGCGACCTGCCATTATACCTTCGTCGATCAAGACGTCGTGCAGTACATGGGTTATCTGCCGCAAGACATGATCAATCGATCTCTATTTTGCTACTACCATCCGGAAGATTTACCGCTCATTAAAGACATCTACGAGACTATCATCAATCTGGAGGAGAGCTCGTCCTTTCGCTCGAAACCGTACAGATTCATCGTCCACAACGGGGGCTGCATCGTCATCGACACCGAGTGGTCCTGCTTCGTCAATCCCTGGACGAAGAAGCTCGAGTTCGTCGTGGGCAGTCATCGAGTCTTGAAAGGACCGGTCGACCCGAACGTCTTCAGTCCGTTCAATCGCAAAAACAACGCGCTGACCAACATCAGCGAGGAGGTGCTCAAAGAGGCGCGAGTCATCCGCAAGGAGATCGAGGACATGCTCGTCCAGGGCGTTCAGATGAGATTCAGGCCGCCCAACAACGACGCCCTGTTGTCGAAGACCAACGACTTCACGACTTTCGTGGAGAACGTGCTGCAGGAGCTGCGCAGCCCGGTCCCGCTCAAGGACCACATGGCCGTCGACGACCGCAGCTTTTCGGGAACACGTTGTCCCTTGTTGCAGGAACACGACAGCATCATGCTCGGCGAGATATCGCCCCATCACGAGTACCTGGACAGCAACTCGTCCACGGAGACGCCGCCGAGCTACAATCAGCTGAATTACAACGACACGATCGAGCGCTTCTTCAACAGCAACGTCGTGGTCCAGGGCACCAAGGGACCCTTCGCCAGCGACAGCGAGGAGATTGCCCAGTCGAGCGCCAACAGCAGCGAGGAGCTCGGAAAGAATAATAACACGGCCTCGAGACCCGATGGCCGTCGTAACAAAGATCTAAAGTGCGCCGCCTCGTCGACCaacggcagcggcaacagcggcagcaacgaGATGCTCAGCAGCGAGTCGAACAATCAGCAGAGCTTCAGCGGCGGCACCAACTCCAACGCCACGACCAGCCAGACCACAaccaacaacagcagcaacaacaataacaacgacaATAAAAACAAGGGCTTCAAGCCGCCCCTGCTCACCGAGTCCATTCTTCACAAGCACGACGCCGAGATGGAGACGCTCATGGTGCAGAAGCACAGGGAGCTGAAAAAAGGCGACAAGATCAGGAACAAATCCAACGATCAGAAGGCCAAAGCCGCGGCCGCGGCTGCCGCCGCTCAGTCCGGAGAGGCGCCGAATAATGCCGCCAATAACAAATCGTCCAGGCTCAAGCGTAGCGCCAGCCAGACGCCAGATCCAGAGGGCAATTTCAAAATGGCCAAGTACGACGAGACGTTGAAATcatcgcagcagcaacaaaataATCTCGGCCAAGCCATTTCGACTACGAACAATGCCTTCGCGAATAAAGCTAACAATAGAGCAGGAAATCTGTTGTCCCAACCGATGCCAGCCTCATTAGCTGCGCCCGCACCACCACCCCCCAGCGCCACCGTGAATAATCAATGTTTCGCCAATGCAAACATTAGTCCACAAGCGACGACTCGATACCCGCCGGGCTTCTTCCAGATGTTTCCGGTCTACTACATGCCGGTACCAGCGGCGGCGCCGATTCCACGCGAAGATCCCGCTCTCGGTACCGCCGCAGCGCCACAGGATCATCAGCAGCACCATATGGGCTTCCCAAGCACCATGAACCCAGCCGCTCCGTACTGTTACGTGCCGATGCCGTGCATGCCCGCGCCCATGTCGGGCTTGATGTACCCGCCAACGGCATTTGCTAGTCAGCATCATCGCACCCATCCGTTCgcggctgctgcggcggcAGCTGGCGTGTACGATCGCTCGCAGGCCGTAACGATGCCGGAAGCCGTTGCGAGCACCGGAAATCTCAATAATATGAGCGCGAGTCTCGCGGCGGTGGCGCCTCAAGCCCACCGGCAGCAGGCTCGGCTGAACCCGGCTCAGTTCCTCCAGGCCGGACAGCAGTTGCAGCAATCACAGCCACAGGTGCAGCAACCGATGCAGACACCGGCTTCGACGATGAGTCCGTTCGACGACGACAGCAACAGCAAGAAGCGTCCCGCGAGTCGAGCCACGAGCGTCAAGGCCGAGCCCGGCAGCAGCATGGCCATGTCCGAGTCCTCGAAGAAGATATTCTCGCCCGCGGGCATCGTTTCGTCCTGCCTGACCGACGACGGTGGCGGCTACGTTCCTACGAGCAGCAGTCGCATCGATCGCGACTGccagagcaacagcagcgccaGCCAACAGCTCACCAACTCATCATCCTTTGGGCTTTACCAAACGACCAAATCCCGAGAGAGCTGGACCGACAACGGCACCAGCAACAAATCCTTCGGCGTCACTCGCAAGGAGCCACGCTGGATCGAGGAAGTGAATCTCACCACCGAGCTGATCTATCAGTTTCAGCTGGGCTCTCGCTCCCTCGGCAGCGTCCTTGAACGCGACCTCGAGTTCCTCAAATCCACCAAACAGCCGAGCCTCGTCAACGACCAGCTCGGCCAACTATTCATCGATCTCGACCTCGAGGGTTTTGGCTCCAAGCCCATCCTCGAGGAGATCAGCTCCAATAATACACCAGACACGGGCAGCGATCTGTCACAAAGggcagtccatgaaggtcacaaGGATTatgcgtgcgacaagtgcggaaagaaattcggacgaaaagaaaattttctcttgcaccaaaagacagtacacgagggtcgcaaagatttcgcatgcgacaagtgcgaaaagaaatttggccGAAAATCCAATTTGCTCTCCCACTTAAAGTCAGTACACCAAGattacttatgcgacaaatgcgcgaagagatttggaaataaaccgAGTTTGCTCAAGCATATAACGATGGTACACGatgatcgcaaagatttctcaCGTGATAAGAGCAAggagaaatttagaaaacaatcgcatttgctttttcatcaaaatacagttCAAGAAGGTCGGAAATATTTCAAGGCCTttcaagattatttatgtgacgattgcgggaagaaatttggactaaaacatCATTTGCTCTCTCACCAAAAGATTGTACACGAAGGTggcaaagattactcatgtgacgACTGCCATAAGAAATTCGTAAATCAAagcaatttacaaaaacatcaaaaaatggTCCACGAATGTCGTGAAGATTTCATTTGTAAtgagtgcgagaagaaatttggacaaaaatcgactttgctcTCGCACCAAAGATCAGTCCATgatggtcgtaaagattacgcgtgcgacaagtgcgacaaaaaatttggGTACAATTCACATTTGCTCTCCCATCAAAGGacggtacacgaaggtcgcaaagattacttatgcgaaaagtgcgcgaagagatttggaaataaacagagattgctctaccaccaaaagacaatacacgaaggtcgtaaagattttgtaCGTGACAAGTGCGAGGAGAAATTTCGACTAAAATCGAATTCACTTACCCACCAAAAAATAGTGCATGAAAACCGCAACgattttgaatgtgacaagtgcgagtgGAAATTCAGATATAAACAgaatttgatcagacaccaaaagataatacacgaaggtcggagagatttcgcatgcaacaagtgcgagaagaaatttggacaaaaggtGCATCTGATTACCCACCAAAAGAATGcacacgaaggtcacaaagattttgcatgcgacaaaataatgaaaaaaaattttcaaatgagtAACActcaaataaatacaaaaattgTGAGAGTCGCGAGAATAAATTGA
Protein Sequence: MERVRVALPFSKVGVDYAGPFHVRAFHGRGRTSVKSYIAVFVCFVTKAVHLELVFKCDAPSFIAALKRFISRRGYLAEIWSDCGTNFVGADAELRAMFAQESELVKGVIRFSTNRGIKWRFNPPGAPHFGGLWEAAVKSTKFHIRRVVGEAKLTSEEFETLLCQVEACLNSRPLTSLVDDSQDAQPLTPAHFLIGRASIIIAEPRLTEDCLSPCQRWQLVTQMVQHFWDRWSEEYIRQLQPRGKWRKDTPAPKVGDVVLIKYESTPPTAWPLARVTEVHPGKDGVVRVLTLKTATSTVRRPVVKYARLKILYPWTPSACRRFAISSRSARDRTWISDANRSTTETIPKLISNKKEKSHKKKKTKNIITTTALIESTQAPSSCTQAKPEPVTNAQITQQVFEPVKPIVEKKTEEQAVVELVDATDPGVHNDSNTSLPTTATDAAGLAAKINPIDESSSQFTVKPEETIIPTIFSTRHNATCHYTFVDQDVVQYMGYLPQDMINRSLFCYYHPEDLPLIKDIYETIINLEESSSFRSKPYRFIVHNGGCIVIDTEWSCFVNPWTKKLEFVVGSHRVLKGPVDPNVFSPFNRKNNALTNISEEVLKEARVIRKEIEDMLVQGVQMRFRPPNNDALLSKTNDFTTFVENVLQELRSPVPLKDHMAVDDRSFSGTRCPLLQEHDSIMLGEISPHHEYLDSNSSTETPPSYNQLNYNDTIERFFNSNVVVQGTKGPFASDSEEIAQSSANSSEELGKNNNTASRPDGRRNKDLKCAASSTNGSGNSGSNEMLSSESNNQQSFSGGTNSNATTSQTTTNNSSNNNNNDNKNKGFKPPLLTESILHKHDAEMETLMVQKHRELKKGDKIRNKSNDQKAKAAAAAAAAQSGEAPNNAANNKSSRLKRSASQTPDPEGNFKMAKYDETLKSSQQQQNNLGQAISTTNNAFANKANNRAGNLLSQPMPASLAAPAPPPPSATVNNQCFANANISPQATTRYPPGFFQMFPVYYMPVPAAAPIPREDPALGTAAAPQDHQQHHMGFPSTMNPAAPYCYVPMPCMPAPMSGLMYPPTAFASQHHRTHPFAAAAAAAGVYDRSQAVTMPEAVASTGNLNNMSASLAAVAPQAHRQQARLNPAQFLQAGQQLQQSQPQVQQPMQTPASTMSPFDDDSNSKKRPASRATSVKAEPGSSMAMSESSKKIFSPAGIVSSCLTDDGGGYVPTSSSRIDRDCQSNSSASQQLTNSSSFGLYQTTKSRESWTDNGTSNKSFGVTRKEPRWIEEVNLTTELIYQFQLGSRSLGSVLERDLEFLKSTKQPSLVNDQLGQLFIDLDLEGFGSKPILEEISSNNTPDTGSDLSQRAVHEGHKDYACDKCGKKFGRKENFLLHQKTVHEGRKDFACDKCEKKFGRKSNLLSHLKSVHQDYLCDKCAKRFGNKPSLLKHITMVHDDRKDFSRDKSKEKFRKQSHLLFHQNTVQEGRKYFKAFQDYLCDDCGKKFGLKHHLLSHQKIVHEGGKDYSCDDCHKKFVNQSNLQKHQKMVHECREDFICNECEKKFGQKSTLLSHQRSVHDGRKDYACDKCDKKFGYNSHLLSHQRTVHEGRKDYLCEKCAKRFGNKQRLLYHQKTIHEGRKDFVRDKCEEKFRLKSNSLTHQKIVHENRNDFECDKCEWKFRYKQNLIRHQKIIHEGRRDFACNKCEKKFGQKVHLITHQKNAHEGHKDFACDKIMKKNFQMSNTQINTKIVRVARIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -