Tbra006683.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001494.1:342026-345449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.029 1.3 9.6 0.3 2 23 353 374 352 374 0.91 2 12 1.7e-05 0.0007 19.8 1.0 1 23 380 403 380 403 0.94 3 12 2.5e-05 0.0011 19.2 3.0 1 23 409 432 409 432 0.94 4 12 0.0015 0.065 13.6 1.2 1 23 438 461 438 461 0.96 5 12 0.0019 0.083 13.3 0.2 1 23 503 526 503 526 0.97 6 12 0.00087 0.037 14.4 0.2 1 23 534 557 534 557 0.97 7 12 0.0034 0.15 12.5 5.9 1 23 563 586 563 586 0.90 8 12 0.00037 0.016 15.6 0.4 1 23 592 615 592 615 0.92 9 12 0.001 0.044 14.2 0.0 1 23 621 648 621 648 0.96 10 12 1.9e-05 0.00079 19.7 0.5 1 23 654 677 654 677 0.96 11 12 0.0079 0.34 11.4 0.1 1 23 683 706 683 706 0.90 12 12 0.00018 0.0077 16.6 1.8 1 23 712 735 712 735 0.94
Sequence Information
- Coding Sequence
- ATGATCGCTTCGTACGTAGGTGCGAATCACCGAGACTGGGACAAGCACCTACACGAACTACGCCACGCGATGAACACTGCGGTACAGTCGTCGACCCGTGTATCGCCCGCGTTCCTCAACTACGGTCGACATCCGCGTCCCGTAAAAAGTTTGCGCCGTGAAGTAGAACCCCGGCCGTCGAATACTGGGAAATCGACGAAACCGTGTGGCTCGACCGTATTTCGCGACTCGATGCGATTCGCGACCTCGTGTGAAACTTCACCTGGACAAGGCGCACGCGCGAGACAAGCTCGTCATTATAACCGCGGTCGCAAAGACGTTAGATTCACCGAAGGCGACCTCGTTATGCGACGCACGCATCACCTATCAGTCGGCGCGGACGGCTTTAATAAAAAGCTCGGTGAGCGTTATGAGGGCCCCGTAAAAGTGTTGAAAGTCCTCTCACCTTCCGTCTACGTAGTCGAGACGCCGAACGATAGGCGCGTTGCGAAAGTCGACGTGAACGACTTGAAGCGTTATATACAACCGCGCAAAACAGACACACAAATCGCCTGTACGGAGCGCGTTTTACAGGTGCAGTGTTGCAGCGATCCGGAGTCTCCCCGCTCCGTACCCGTCGGCGTCCCCTCTGTGAGGCGAGCCGTGTCCACgaccgcgagatctttcgtgcCCTTCCCCCTTTACTTAGCTAGCCGGACCctggtcggcgacgagcatccgctcgtctggcgcgtcgtTCATCGACAAAGCCGGCCAGGACGTGGAGAAGTCGACACGGGCGGTGTGCACGGGGAAGCCACCGTCACAGATTCTGTCGAAATTGTGTCAGAATTCGAAACTGAAGATGTCAAGCTGGATGTAAACTCATTGGTCGCATCGAATTGTAATAACTCAAACGGCGACGTTAAGgtgaatgaagaaaaaattccaaaaattgaagatatagTATTTGTGGACGTGTTAaatctcgacgacgacgacgacgattacgAACCGCCTGTATTTCATAGAAGCAATCGCATCAACGAGGTGCAGACCAATAACACCGAATTCGTAAAGTGTGACTTGTGTAAAAAATCGATAAGCAGCAAAAACTTGCAAAATCACATAGACgcagtgcataatggtgttaGACCTCACAAGTGCGACGAGTGCGGCAAAGCAttcggtaaaaaaaagttgctcgAGAGGCACACCAACGGCGTTCACAAGCAAATCAGGAATTTTACCTGCGGCCAGTGTCAGAAATCTTTTACGCAAAAGTGCGACCTCAAAAGGCACGTTCTCGAGGTACACCAAGATTTCAGACCCCACAAATGCACCCTGTGCCCGAACACGTACAAGAAAAGTTCCACGCTCGCGCTGCACATCGCCAAAGTGCACCGCGATGAAAATACCGACGACGCAACGACCAACTGTACGAAAACCAGCGCCACCGTGGTAAAAATCAACGACGCACAGAGTCAAAGTATCGGCGACGACAAAGTCGTCGTACTGGGCGACTTCTACAGCTGCGGCGAGTGCGACAAGAAGTACATACTCGAGCGCATGCTGAGGGATCACGCGCGCAGGGCGCACGGCAAGCTCCCCGAGGCGACCCATCGCTGCCCGGTGTGCGAGACGGGCTTCGCCGAGAGGAAGGCGCTCGAGGCGCACTTCAGGAGCGTGCACGAGGGCATCAAGCCGCACGCCTGCCAGCACTGCAGCAAGACCTACAACAGGCGCCACCAGCTCAAGCAGCACGTCGAGGCGACCCATCTGGGCCTGCGGCCGCACGAGTGCCCGGAGTGCGGCAAGCGCTTCGGCCTCAAGCTCGGCCTCAAACGTCACCGGGCCGAGGTGCACCGCGGCCTCAGACCGTACCGCTGCGAGCTCTGCCCGCCCGGCCGCGACAAGGCCTTCAGGCAGCCCAGCCAGTTGCGCGAGCACGTGGACACGGCCCACCGGGGCATCAGGCGCTTCGAGTGCGCCGACTGCGGCAAGCGCTTCGGCAAGAAGCCCCATCTGCGCGTGCACCTCGTGACGGTGCACCTCGGCCACAGGGCCCACAAGTGCGCCGAGTGCGCGAAGGCGTTCGGCCAGATCGGCGACCTCAGGAAGCACGTGGACGCGATTCATCGGGGCATGAGGCCGTACGCCTGCGAGCAGTGCGAGCGCAGCTACGGCCAGAAGTCGCACCTGACGCATCACGTGAACGCGGTGCACTACGGCGCCAAGCCCCACCTGTGCCCGGTCTGCTGCAAGGCGTTCTCCGCGAGGACCGTGATCAGGCGTCACTTCAAGGCGATGCACAAGGGCCTGGTGCTGGAGGAGCTCGAGAAGAACAGGGTGAAGCTCGAGCAGCTGGAGAAATGTGATTGa
- Protein Sequence
- MIASYVGANHRDWDKHLHELRHAMNTAVQSSTRVSPAFLNYGRHPRPVKSLRREVEPRPSNTGKSTKPCGSTVFRDSMRFATSCETSPGQGARARQARHYNRGRKDVRFTEGDLVMRRTHHLSVGADGFNKKLGERYEGPVKVLKVLSPSVYVVETPNDRRVAKVDVNDLKRYIQPRKTDTQIACTERVLQVQCCSDPESPRSVPVGVPSVRRAVSTTARSFVPFPLYLASRTLVGDEHPLVWRVVHRQSRPGRGEVDTGGVHGEATVTDSVEIVSEFETEDVKLDVNSLVASNCNNSNGDVKVNEEKIPKIEDIVFVDVLNLDDDDDDYEPPVFHRSNRINEVQTNNTEFVKCDLCKKSISSKNLQNHIDAVHNGVRPHKCDECGKAFGKKKLLERHTNGVHKQIRNFTCGQCQKSFTQKCDLKRHVLEVHQDFRPHKCTLCPNTYKKSSTLALHIAKVHRDENTDDATTNCTKTSATVVKINDAQSQSIGDDKVVVLGDFYSCGECDKKYILERMLRDHARRAHGKLPEATHRCPVCETGFAERKALEAHFRSVHEGIKPHACQHCSKTYNRRHQLKQHVEATHLGLRPHECPECGKRFGLKLGLKRHRAEVHRGLRPYRCELCPPGRDKAFRQPSQLREHVDTAHRGIRRFECADCGKRFGKKPHLRVHLVTVHLGHRAHKCAECAKAFGQIGDLRKHVDAIHRGMRPYACEQCERSYGQKSHLTHHVNAVHYGAKPHLCPVCCKAFSARTVIRRHFKAMHKGLVLEELEKNRVKLEQLEKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -