Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010001272.1:271611-292681[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2e-05 0.00086 19.6 0.6 1 23 196 219 196 219 0.97

2 10 1.2e-06 5e-05 23.4 2.3 1 23 225 248 225 248 0.98

3 10 0.0031 0.13 12.7 2.6 1 23 254 277 254 277 0.97

4 10 3.7e-06 0.00016 21.9 2.9 1 23 283 306 283 306 0.97

5 10 7.4e-06 0.00031 20.9 2.7 1 23 312 335 312 335 0.98

6 10 1.2 52 4.5 0.6 3 23 343 364 341 364 0.94

7 10 2.2e-06 9.4e-05 22.6 1.1 1 23 370 393 370 393 0.97

8 10 0.00086 0.037 14.4 0.2 1 23 399 422 399 422 0.94

9 10 0.0011 0.048 14.0 2.4 1 23 428 451 428 451 0.98

10 10 3.9e-07 1.6e-05 25.0 1.2 1 23 457 480 457 480 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2e-05	0.00086	19.6	0.6	1	23	196	219	196	219	0.97
2	10	1.2e-06	5e-05	23.4	2.3	1	23	225	248	225	248	0.98
3	10	0.0031	0.13	12.7	2.6	1	23	254	277	254	277	0.97
4	10	3.7e-06	0.00016	21.9	2.9	1	23	283	306	283	306	0.97
5	10	7.4e-06	0.00031	20.9	2.7	1	23	312	335	312	335	0.98
6	10	1.2	52	4.5	0.6	3	23	343	364	341	364	0.94
7	10	2.2e-06	9.4e-05	22.6	1.1	1	23	370	393	370	393	0.97
8	10	0.00086	0.037	14.4	0.2	1	23	399	422	399	422	0.94
9	10	0.0011	0.048	14.0	2.4	1	23	428	451	428	451	0.98
10	10	3.9e-07	1.6e-05	25.0	1.2	1	23	457	480	457	480	0.98

Sequence Information

Coding Sequence: ATGGCCGACAGCCGTCCACCGTCAAGTGTGCGCAGTGCCGTTGTCGGCTTCGCCGATCGGGACACGGATCCGCGGCGGGGCGAACGTCGGGCGCTggtcgcgcgcggcgcaacgTGGGCGCTCGCCTTCGGTCTGCTCGCCTGCATAGCACAAGTGGCGGCCACCGCCATCCCCACCTGGGCCTACTTTCACAATCCCGACGGTGAGTGTCcctcttcttcttattcttactcctcttcttcttcttttttacgcTACTATATATACCACGCTCTatcgtattatgtatacaaacTCGCGAGAAACACGCGCGTCACGGCAGTCGTGCGTATGTAccgaacagaaaaaaaatcaaatcgtaCACACGCTGGACCGATAATCCTCAACACCGCTACCACGCGCATGACTCCAAAACTCGCGCGTCTATGGGAAAGTCGATCGCTCCTCTTTTTCACCACGGATGATGTGTGCAGTGCAACGAGCATTGCCCATTATATACGATGTCCGGACAGTGTGGATCCGAACAAtgccatatacacatacaataATGAACACCAAttgacagtccacgaaggtcgcaaagattacccatgtgacgattgcgagaaaaaatttggatacgAATCTCATTTGCTCGAGCACCAAAAGGTAGTTCacgagggtcgtaaagattacacTTGCaaccagtgcgagaagaagtttggacaaaaatcgaaattgattagacaccaaaagacagtacacgaagatagtaaagatttcgcatgtgataactgtgagaaaaaatttggatataaacatACTATGCTTcttcaccaaaagacagtacatgactGTCGCGACGATTatgcatgcaacaaatgcaagaagaaatttggacaaaaacaaaatttgttcAGACACCAacaaacagtacacgaaggtcgcaaagatttcgtatgtgacaagtgcgagaaaaaatttacacaaaagtcATATTTCCTGTTACATCAAAAGAcggttcacgaaggtcgcaaagattacggatgTGACAGGTGTGTAAAGAAGTTTGGATTGAAATCCACTTTGCTctttcaccaaaaaatagtccatgaaggtcacaaagattacgcttgcAACCAGTGCGAAAGGAAATTTGGAAGACGAAGTGCTTTGAcgagacaccaaaaaacagtccacgagggtcgtaaagattacccTTGCaaccagtgcgagaagaagtttggatATAAATGGCTTTTACTTTCCCACCAAGGcatagttcacgaaggtcgtaaagatttcgtatgtgacaaatgcgagaagaaatttggacaaaaaccacatttgctcttccaccaaaggacagtgcACGATGGTTTCAAAGGTTTTGTATGTGATACGTGCGAGAagatattttcacaaaaatcgaaattgattagacaccaaaagacaatacacgaacttcgcaaagattatgcatgtgacagAAAAAGTAACGAGCGGAAATCGTCCACTCAGAGTAGTCGAGCCTCTCGTGTCACATACgacgacgACGATAAAAAGGCGTACGAGCGTCGTCATCGATTAGTCCCCGTAGTTTTACGTAAAAACAAACGTATTCGACGGGAAATTCCAGATTCGATGGCACGTCGCTTTCAAACAAGAAAGAGATCCTCTCCAAGACGCACCAGAACTGTGTGCATGCAGCCACGCGAACAAACTTTTTACAACTACGAAATGGCTCTGCT
Protein Sequence: MADSRPPSSVRSAVVGFADRDTDPRRGERRALVARGATWALAFGLLACIAQVAATAIPTWAYFHNPDGECPSSSYSYSSSSSFLRYYIYHALSYYVYKLARNTRVTAVVRMYRTEKKSNRTHAGPIILNTATTRMTPKLARLWESRSLLFFTTDDVCSATSIAHYIRCPDSVDPNNAIYTYNNEHQLTVHEGRKDYPCDDCEKKFGYESHLLEHQKVVHEGRKDYTCNQCEKKFGQKSKLIRHQKTVHEDSKDFACDNCEKKFGYKHTMLLHQKTVHDCRDDYACNKCKKKFGQKQNLFRHQQTVHEGRKDFVCDKCEKKFTQKSYFLLHQKTVHEGRKDYGCDRCVKKFGLKSTLLFHQKIVHEGHKDYACNQCERKFGRRSALTRHQKTVHEGRKDYPCNQCEKKFGYKWLLLSHQGIVHEGRKDFVCDKCEKKFGQKPHLLFHQRTVHDGFKGFVCDTCEKIFSQKSKLIRHQKTIHELRKDYACDRKSNERKSSTQSSRASRVTYDDDDKKAYERRHRLVPVVLRKNKRIRREIPDSMARRFQTRKRSSPRRTRTVCMQPREQTFYNYEMAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -