Tbra008712.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000689.1:271178-293241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.48 10.9 0.4 1 23 277 300 277 300 0.93 2 13 0.029 1.2 9.6 4.1 4 23 312 337 306 337 0.82 3 13 0.00014 0.0061 16.9 1.5 1 23 343 366 343 366 0.97 4 13 8.7e-05 0.0037 17.6 1.4 1 23 372 395 372 395 0.97 5 13 5.5e-05 0.0023 18.2 0.5 1 23 401 424 401 424 0.97 6 13 0.00018 0.0077 16.6 3.6 1 23 430 453 430 453 0.97 7 13 0.013 0.57 10.7 2.3 1 23 459 482 459 482 0.92 8 13 1.6e-05 0.00066 19.9 0.8 1 23 488 511 488 511 0.97 9 13 6.5e-06 0.00028 21.1 1.0 1 23 517 540 517 540 0.97 10 13 0.0015 0.063 13.7 6.1 1 23 546 569 546 569 0.97 11 13 0.00014 0.0059 16.9 0.6 1 23 575 598 575 598 0.98 12 13 0.0011 0.046 14.1 2.8 1 23 604 627 604 627 0.98 13 13 7.8e-05 0.0033 17.7 2.6 1 22 633 654 633 654 0.95
Sequence Information
- Coding Sequence
- ATGTTATCGAGTCTATCGAGAAATTCAACTAATTCGTCAATTCGACTGATTCTCTGCCTCAGTCGACCCTCCGCATTCGCCGTAAGGGAGGCAAGGGACATCCCGTATAAAACATCGTTATCGACCTGTCCGGTGTATAACAAAAATTGGCGCCCGAACAGGGACCACCTTTGGCAAGACTGCAGCACCAGCAGAAAATTCACTAAAATGTCTACTCCACGAACAACGAATACGGATAAAGACAAATCCTTAGATAGATATAACAAGGTCGCCGATGCAGAGGAACAGCAGTCGGTTAGGTCAGTAGTAGATCAAAAGGCAGAGCCAATGGCTGTCGATGCGAAGGAGCACGACGAGAATCCATTGCGATTCATGAAGGACGAATCCAAGGAGGAAGCCTTTGATATCGTTGAAGGACCTAAAACAGAGAACAACGATACTAAAACCAAGAGGATGGAAACAACAGAAGAGTCATTGGGAATCCTAAGAACAAATTTTGATCCACcgacagCGCGTGAATGGCACTCCCAGAACTCTGCGACGGTTATAAGAATCCTTTTGGACCAAGAGGTTGAAATCGTAAATAACACGATTGTATTTCGGCTACATTTAAAGTCCGAAAGCTCTTCTTTACACGAGCGTCTAAGAGGCATGCACATAGAGACGAGGGAGCGCGCGAGCCATAGCGAGTCAGCGCGCAGTGCACATGCAGAGAGAAAAGACAATGGCCTTTCGATATCGAGCCGATACTTCCTGGCTGCTGGGCAATTTCGAGAGGGAACGTTAGATGTGTCTAGGTACCCGAGTCTGTGTGCGGTGCCCGCGTattacttatgtgaaaagtgcgccaagagatttgcaAGTCAGCAGAGATTACTCTCACACGTAAAAGGAGTCCATGacggtcggaaagatttcgtcTGCAAAGAATGCAAAGATTACTCACGTGACatgtgtgagaagaaatttggaaataaattagctttgttgaagcaccaaagaacagtccacgagggttgcaaagattacgcatgtgacaaatgcgagaggaAATGTGGGAGTGAATCAGATTTAttaaagcaccaaaggacagtccatgaaggtcgtaaagattacacatgtgataagtgcgaaaaaaaatttacacaaaaaccgaATTGGCTCTACCACAGaaaaatagtacacgaaggtcgcaaagactatgcatgcgacaagtgcgaaaagaaatttggggaacgaGGCACTTTGATTAAACAtcaaaagacaatacacgaaggtcggaaagattttgcatgtgacaagtgcgagagaaagtTCGGACATAAACCGCATTTGCTGagccaccaaaggacagtccacgagggtcgcaaagatttcgcatgcgacaagtgcgaaaagaaatttggacataaatcgactttgctttttcaccaaaaggcagttcacgaaggtcgcaaagactatgcatgcgaaaaatgtgaaaagaaatttaggGAACGAGGCAGTTTGATTAAACATCAAAAGATAATGcacgaaggtcagaaagattttgcatgtgacaagtgcgagagaaaatttggagaaaaatcaaatttgttgaagcaccaaaggacagtccacgagggtcgtaaagattttgcatgtgataaatgccAGAAAAAGTTCGGACATAAACCGcatttgctcttacaccacaggacagtccatgaaggtcgcaaagattatccATGCGACAACTGCgtgaagaaatttggaagtaaatcaggtatgttgaagcaccaaaaaacagtccatgaaggtcacaaagattacccatgcaataagtgcgagaaaaaatttggacttgaGCATCATTTACTTTTGCACCAAATGACAGTCCATGAAgttcggaaagattttgcatgcgataaatgcaagaagaagtttggacgaaaatcacatttgcttttgcaccaaaagacaCTCAACTCATATGTTGCATGA
- Protein Sequence
- MLSSLSRNSTNSSIRLILCLSRPSAFAVREARDIPYKTSLSTCPVYNKNWRPNRDHLWQDCSTSRKFTKMSTPRTTNTDKDKSLDRYNKVADAEEQQSVRSVVDQKAEPMAVDAKEHDENPLRFMKDESKEEAFDIVEGPKTENNDTKTKRMETTEESLGILRTNFDPPTAREWHSQNSATVIRILLDQEVEIVNNTIVFRLHLKSESSSLHERLRGMHIETRERASHSESARSAHAERKDNGLSISSRYFLAAGQFREGTLDVSRYPSLCAVPAYYLCEKCAKRFASQQRLLSHVKGVHDGRKDFVCKECKDYSRDMCEKKFGNKLALLKHQRTVHEGCKDYACDKCERKCGSESDLLKHQRTVHEGRKDYTCDKCEKKFTQKPNWLYHRKIVHEGRKDYACDKCEKKFGERGTLIKHQKTIHEGRKDFACDKCERKFGHKPHLLSHQRTVHEGRKDFACDKCEKKFGHKSTLLFHQKAVHEGRKDYACEKCEKKFRERGSLIKHQKIMHEGQKDFACDKCERKFGEKSNLLKHQRTVHEGRKDFACDKCQKKFGHKPHLLLHHRTVHEGRKDYPCDNCVKKFGSKSGMLKHQKTVHEGHKDYPCNKCEKKFGLEHHLLLHQMTVHEVRKDFACDKCKKKFGRKSHLLLHQKTLNSYVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -