Tbra010250.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- boka
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000753.1:287540-326025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.0074 16.6 1.5 1 23 1164 1187 1164 1187 0.97 2 12 0.011 0.46 11.0 1.1 1 23 1193 1216 1193 1216 0.96 3 12 0.00044 0.019 15.3 4.3 1 23 1222 1245 1222 1245 0.97 4 12 0.0047 0.2 12.1 3.2 1 23 1625 1648 1625 1649 0.97 5 12 7.6e-05 0.0032 17.7 1.1 3 23 1662 1683 1660 1683 0.97 6 12 6.2e-05 0.0027 18.0 3.5 1 23 1689 1712 1689 1712 0.97 7 12 0.0032 0.14 12.6 0.5 1 23 1718 1741 1718 1741 0.97 8 12 3.8e-07 1.6e-05 25.0 0.5 1 23 1747 1770 1747 1770 0.97 9 12 0.00024 0.01 16.2 0.4 1 23 1776 1799 1776 1799 0.98 10 12 1.2e-05 0.0005 20.3 0.3 1 23 1805 1828 1805 1828 0.96 11 12 4.9e-06 0.00021 21.5 2.2 1 23 1834 1857 1834 1857 0.97 12 12 0.00042 0.018 15.4 5.2 1 23 1863 1886 1863 1886 0.96
Sequence Information
- Coding Sequence
- atgtcaaaaagatttttccgAGGATGGGCACTGAAGCCATTCTTAGAACTAATACAGAACCGACTTCCAATTCTTTGCTGTGAGATAATCATCAAAAATCTGATGAACGAGGATTTGTGtcatatttgcttggcagctGAAAGTCCAATTCATAAAGAcaatatacaaaaatgtaacaGCGAAAGGCCTGTGAGGGCCAGAAAAGCTCCGAAAAGGCTACAAATTGAATGgcATGGACTTTTTGTAAAAGCTCAAACAGCTTTGTGCATGTCTTCcatgaaagaatttttcaatctgcagttggaaaataaaggAGCGCAAGCTCGATCAGTCAAAGTCGATGCCAAGGaacagttgaaaaaattcgtcgaCCGTCTGGAAGCTAAAGTAAAGCCAGCCCTGACCGAGACCTACCACGAAGTCGAGCAAATTAAATCAGACATGGAAAACGCAACAAAAGAGGCCTTCAAATTCTGTAACTATCGTGAACAAGATGCGACAATTTCGATACAGCCGATCAAATCTGATATAGTGAAAACCTTGgctgaaaaaatgaagttagATAGGGATGATGAGTTCAATTGCGAGATGAAGATGCTCTCCGAAATGTTTGAGTACGGTTCCATTATGAGTACCCTGACTAAATGCATCGAAGATAATTCGACCAAATCCCTGGAGCCCGTGATCGAGGCCCTGAAGGAGCTTGACCGTAAGGTCTTCTTGATTGACTACAACATCGAAAGAGCTAAAAAATGCGCCGACGATGCCACCTCGACACCGTCTTCCGCAACCAAGTGCTTGAACGAGCGACTGTGGATAAACGAGATAGTCATGTCGTCCGATGACGTATCCGATGAAAGTATCCACGGCGATGGCAACGaccaaaatcaaaaattgcaAGAATTCGAGAGGCTGCGTGAAAATATCGCTTGGGAGTCCCAGAGGAAGCGACGCAAATTCATCCGTCGACTTTGGCCTGTGATCGAAAATTGGAACACCGGACTTCCGGAGCTTCGAAACGTCTTTCGAAGGGAAGAAATGGATCGTCTCCTCCAGGACGCCGTATACTGCATGGGTGGCAAGCAGAACTCTCGCCAAGGAGTCCGATTCATCGAGTTCGTGGCTCGCGCGGGCTACAGGGACGAGCCCGAGCTCGCAGTAGACGGCGAGCCAGTGTCGCGTCGCACCACCGCGCTGCATCGCGCCTCTCTGCGCAGGTTTCCCAACAAGATCGTCGTGCTCCGCGAGctctttaaaatatacgacagattgGACGTCGATTACACGGACAAGTTCGGTCGCACGCATTTCTACGTGGCCTGCAAGCATGGCTTGGTCGACATAGTCGAGCAATTTTtggagctcggccaggatgcCAATTACCTCGGGCCAAGAACGAGAGAttcgccgctacacttggctctcGTGCACGAGAACAGGCAGATGGTCAGACTTCTGCTGCgacgaggcgccgatccgaatctggcctCCAGGGCCGgatcgacgcctctgcacatTATCTGCGTGACCATgaactacgacgacgacttcaGGGATGAATTTTTCGCGATCGTCGAAAACGAGCTCGGACTGGCGGTGGAGCTCGACGCCGTGGTGGACCGTGGCTGCAATACGATACTGCACGCGGCTCTGTTCCGCGGCAGAATCGACTCGTTCGAGTTCCTGCTGAGCAGGGGCGCCTACGTGAACGCCGCCAACGGCTACGGATACACCGCTCTGCACCTGATCTGCAACGGAGATTGCGATCAAGTGGAATTGTTGCGGCGGTTGTTCGAGCTCGGCCGCCAGCATCATCGGGTGCAGATAGACGCCCGGGACAGGTTCGGTAACACACCGCTTCACTTGGCCGCGAGGTCGCATCATCGACGGTCGATCGAGTTGCTGTTGCGccgaggcgccgatccgagtTTGGTCAACGAGGCCGGATGGACGCTTCTGCACCAGGTCTGCTGGTGGCACAGGGACGACGTCGAACTGCTGGAATGGCTGCTCGAGCTCGGAGACGAGGAGCAACGAGCGGTGCTGCGGGTCAACGCTCGGACGACCGACGAGTCGCGCAACACTGCGTTGCACATGGTGCTGCGGTGCGGGCGCTCGGACAACAGGAGGatggccgagctgctgctgagggccggcgccgatccgaatctagCCAACGCGAAGGGAGCCACGCCCCTGCACGTCATCGGCGAGTCATCGTACAACCGTAACAATAACTTGGCGAGGCTGTTCTTCGACGTCAACGACGAGTCGCGGCGGACCGTGCGGATCGACGCGCGGGACGAGATGGGCAACACCCCGTTGCACCTGGCGTTGCGCCACATGCGCGACGGGCACGAGGAGAtggtcgagctgctgctgagacggGGCGCCGACCCGAACGCCGCCAACGCGGACGgatcgacgcctctgcacgtcatttgcCAGAGCGACGAGAATAGCAGCTTGTTACGGTCGTTTTTGAACGTCAACGACGAGCTCGAGAAGACCGTTCAGATCGATATCCGGGACAACGAGGGCAACAGGCCGCTGCACCTGGCCGTGCGCTCCACGAGCGACGGCTACAAGGAGAcggtcgagctgctgctgcgacgggGCGCCGATCCGGACGCCGCCAACGCGGTGGgatcgacgcctctgcactttatttgcaagagagactgcgacgacgacgatttggTCGAGTTTTTCTGCGagataaacgaaaaaatcaaCGATCGGGCGGTGCGGATCGATGCCCGGGATGAGaggggccggacaccgctcgAAGAAGCTATGGCGAATACTCTGCCGCGCGCGGTCGAGTTTCTGCTGAACCAAGGCGCTCATCTGTCCGGCTTCGTTTTTCGACCGCTTTTTCATCTGTCTACTTTGAGTTATTTCGACCAGGAATTGGTGCCGAGATCCAACGAGAAGTgccataattttaaattgagacTGACCGCCGGGACGATGATGGTCCTCGAACGTCTCGAGGACGTtggatacgagctggaccgaGGCGACGCCCTGAAGATCATGGCATTCTTCTCGAGGCACGGATTGTTGTTGCCGGACAACTCGGAGGAGGATAATTGGTACGACGACAAAAGATTCGAGTACGACGCCAAAAGAATCGTCGTCAAGCCGagcctgtcgctctacgatttGACTCGGCTACCAGCCCGAGAGGCGGATAAACGGCTCACCTTCGCGGACTACTTCGAACTGGCGCAATCGGAAAAATTGAACAGGCTCCGCCAGAGGCATCTCGATCTCTGCGCTcggcatctgtgcgagaaactatCGAGACGATTTTTCTGGAGCTGGGCACTGTATCCTTTCATGGAGCTGATACACTGGCGGCTGCCGATTCTTTGCTGTGATAAAATCATGGAGATTTTGATGAATGAGGATTTGTGGCGTGTCTGCTTGACGGCTACAGAACAAAATTCacatcaaaaaattgtCCACGAATGTCAAaaggattacgcatgcgacaagtgcgagaagaaatttggacaaaaacctCATTTGCTCgaccaccaaaagacagtccacgaaggtcgcaaagatttcgcatgtgacaagtgcgatgCGAAATATGGACTAAAACATCAATTGCTCagacatcaaaaaattgtCCACGAATGTCAAaaggattacgcatgcgacaagtgtaagaataaattttcacaaaaatctcatttgctctaccaccaaaagacagtacacgaaggtcggaaaagTTTCGCATGTAATAAGTGTGAAAAGaaagaaatcgaCTGGCTTCTCACGGAATTCGCACAATCAGACGTTTACAATTATAGCTATAACTACGAAGGAAAACGATTTATTGAGTTCGTGCGACgcaccggctacaaagacgagcccgacctcggcgaagacggcaagccaatTTTGCGTCGTACCACACCACTTCATCGTGTTCATAGCTACGCCCttgaactttttgaaatatacgacagattcgacgtgaactacaTCGACGATTTATATGGATTGACtcattttcacgcggcctgcaaATCCGACTGCAACGAAGCGGTCGTGAagtttctcgagctcggccaagATCCCAATCTCCTCGTGTCTGTAACAGGCGAAGCGCCGCTACACTTGACTGCGCAATTCGATAACCTGGAGGTGTTCGGAACGCTGCTGAGAAGTGGCGCAGATCCTAATTTAGTCAATGCCGAGGGATCGACACCTCTGCACGTCCTTGCCCAAAGACACCTCGATGATAACTTGGTGGAcctatttttcaagatctgcgacgaaaaaaattatctggtGCCGCTCGACCCCCTAGACAATcggggccggacaccgctgcaaatAGCTGTGTCAAACTTTTTGCCGCATGTGGTTGgtgtactcttggatcgtggcgctgatTTGTCTAAATTCGTTTTTCCAGCTGACTTCAGATCTGAACCTTGGGCTTATGAAATTTGGAATGATTTTAGATTGAGACTAGCGTCTGGGGCTCTGGGCGTCGTCCAACATcttgagaaaagaggatatAAGCTGAACCGAAGTGAAGCACTAataatcatgaaatttttcgccaagtACAAAATGTTGGAAAAGTCAacagatattgaaaaaaattggtacGATGACGAGGAGTTCAGGAACgcagcaaaaagaaaatcgataATTCCCAGGACGTCTTTCATCCAGGAATTCGGCGATGGTGACGAGCTAACgagagaagcaaaaaagaCATCGGAGCCCACACAACGGTACTTGTCGCTCGACGACCTGATTCGCTTAAGACCCGAAGAAGCTGAAAAACGACTCACATTTGAAGACTACGTCAAGacagtacacgaaggtcgcaaagattacaaatgcgacaagtgcgagaagaaatttggatggAAATCGACTCTGCTCtcacaccaaaagacaatacaccaccaaaagacagtacacgaaggtcgcaaagactacggatgcaacaagtgcggaaagaaatttggactacAAACAGATTTATTCAAGCACCAAAGAACAATCCACGAAGgacggaaagattacgcatgcgacaaatgcgagaagaaatttgggcataAACAGAACTTGCGCActcaccaaaaaacagtccatgaaggtcataaggattatgcatgcgacaagtgtgaaaataaattttcacaaaaaatcgctttgctctaccaccaacAGACAGTGCACGacggtcgaaaagattacgcgtgtgacaagtgtgggaaaaaattttcacaaaaaccgaatttgcttgtccaccaaagaacagtccacgaaggtcggaaggattacgaatgcgacagttgcgagaagacatttggacaaaaaatgcCATTGAttaggcaccaaaagacagtacacgaagatcggaaagattacgcgtgtgaaaaatgtgggaagaaatttggaatgaAATCCAATTTGCTAACACACATAAGGGCAATACATgatggtcgaaaagattacgcgtgcgacaagtgcgacaagaaatttggacaaaaatcacatttgctaACCCACATAAAAACTGTCCATGAAAGTCGGAGAGAtcacgcatgcgacaaatgcgagcagaaatttcgACAAAAGCAGCATTTACGcgtccaccaaaagacagtccacGGGCCGATCGATATCGACGATAGTGGCAGCAGCGAGACGCGGGCTCGTTGCGGCCGAGGTTCATCGAGCTCGCGAATTAGTATGGGACAGGCGCTCGAGAAGATGTCCCTCGCACGCAGgagCTCCCGACGCCGCAGCACGATGTCGCTGATCGACGTGCAGGAGGGCGTCGTGCTGTCGTCGCGTCGCCAATCGTCGCAGATgacgccgtcgccgccgccgcgcatcAACGTGATCTCGCCGAGCGGCGGCTCGCCCTCGCCCACCGCCTGCACCCCGTCGCCGGTGCGGTCTCAGCAACGCGATCGCAACGACTCGACGTCGAGCACGACCTCGATCCTGGCCTCGGCCAACTCCGCGGGCTCAGCGGGCAAGGATAGCGGCGAGATGAATCCCTATCGGCTTACCCAGCGCATCGTGGAGGACAATTTCAGGCACGAGTCGTTGTACGACACCCCGACGAGTGGCAACGGCGGCGGTAATAGACGCGGCAGCTTTCTCAATCTCACGGACAGCGCGCGCAGGCGGCTGAGCAACGTCGGCGACGCGGTCAGTCGCAAGATCTCGTGCACGATCGGCTGGAAGTCATCCAGCATCGAGACGATCGTCCAGCAGGGCGTCGCTCTGTGCAAGTACTACGTGCGCAATCGGCTGAAACGATCGGGCCTACTGACGCGCAAGATCGGCCTGCGACGCACGACCTCGTCCAAGCTCGTGGTCGAGTCCAACCACACCGCGGCGGCCGCGGCCGGCAACGGCCACTCCGCCTCGATGATGTGGGCCGCCCACCAGATGTTCCCCGAGCTCGCGGCGCTCggggccgagctcgagaagaTGTACCCGGAGCTGTACGAGCGGGTCGGCCGCCAGATCGGCTGCGTGCAGTTCACCAGCAAGCAGCGGGTCGGGGACGCCCTCGGGGACATCGTGCGCGAGCTCATGCAGCGCCACGGCGGCTGCAACTGGTCCAAGATCGTGGCGATCTACGCGGTGGCCGGCGGACTGGCCTGCGACTGCGTCAGGCAGGGCAATCCGGACTTTCTCGACGCCATCTACGAGGCCATGGAGAATGTCATCGAGGAGTACATCGCGCCCTGGATCCTGATCCGAGGCGGATGGTCTGGTCTTGATCGTGAGACTGTTTTTTCTGTGATTTCCTTccttcttctgttttttttattgttgttgttgtaa
- Protein Sequence
- MSKRFFRGWALKPFLELIQNRLPILCCEIIIKNLMNEDLCHICLAAESPIHKDNIQKCNSERPVRARKAPKRLQIEWHGLFVKAQTALCMSSMKEFFNLQLENKGAQARSVKVDAKEQLKKFVDRLEAKVKPALTETYHEVEQIKSDMENATKEAFKFCNYREQDATISIQPIKSDIVKTLAEKMKLDRDDEFNCEMKMLSEMFEYGSIMSTLTKCIEDNSTKSLEPVIEALKELDRKVFLIDYNIERAKKCADDATSTPSSATKCLNERLWINEIVMSSDDVSDESIHGDGNDQNQKLQEFERLRENIAWESQRKRRKFIRRLWPVIENWNTGLPELRNVFRREEMDRLLQDAVYCMGGKQNSRQGVRFIEFVARAGYRDEPELAVDGEPVSRRTTALHRASLRRFPNKIVVLRELFKIYDRLDVDYTDKFGRTHFYVACKHGLVDIVEQFLELGQDANYLGPRTRDSPLHLALVHENRQMVRLLLRRGADPNLASRAGSTPLHIICVTMNYDDDFRDEFFAIVENELGLAVELDAVVDRGCNTILHAALFRGRIDSFEFLLSRGAYVNAANGYGYTALHLICNGDCDQVELLRRLFELGRQHHRVQIDARDRFGNTPLHLAARSHHRRSIELLLRRGADPSLVNEAGWTLLHQVCWWHRDDVELLEWLLELGDEEQRAVLRVNARTTDESRNTALHMVLRCGRSDNRRMAELLLRAGADPNLANAKGATPLHVIGESSYNRNNNLARLFFDVNDESRRTVRIDARDEMGNTPLHLALRHMRDGHEEMVELLLRRGADPNAANADGSTPLHVICQSDENSSLLRSFLNVNDELEKTVQIDIRDNEGNRPLHLAVRSTSDGYKETVELLLRRGADPDAANAVGSTPLHFICKRDCDDDDLVEFFCEINEKINDRAVRIDARDERGRTPLEEAMANTLPRAVEFLLNQGAHLSGFVFRPLFHLSTLSYFDQELVPRSNEKCHNFKLRLTAGTMMVLERLEDVGYELDRGDALKIMAFFSRHGLLLPDNSEEDNWYDDKRFEYDAKRIVVKPSLSLYDLTRLPAREADKRLTFADYFELAQSEKLNRLRQRHLDLCARHLCEKLSRRFFWSWALYPFMELIHWRLPILCCDKIMEILMNEDLWRVCLTATEQNSHQKIVHECQKDYACDKCEKKFGQKPHLLDHQKTVHEGRKDFACDKCDAKYGLKHQLLRHQKIVHECQKDYACDKCKNKFSQKSHLLYHQKTVHEGRKSFACNKCEKKEIDWLLTEFAQSDVYNYSYNYEGKRFIEFVRRTGYKDEPDLGEDGKPILRRTTPLHRVHSYALELFEIYDRFDVNYIDDLYGLTHFHAACKSDCNEAVVKFLELGQDPNLLVSVTGEAPLHLTAQFDNLEVFGTLLRSGADPNLVNAEGSTPLHVLAQRHLDDNLVDLFFKICDEKNYLVPLDPLDNRGRTPLQIAVSNFLPHVVGVLLDRGADLSKFVFPADFRSEPWAYEIWNDFRLRLASGALGVVQHLEKRGYKLNRSEALIIMKFFAKYKMLEKSTDIEKNWYDDEEFRNAAKRKSIIPRTSFIQEFGDGDELTREAKKTSEPTQRYLSLDDLIRLRPEEAEKRLTFEDYVKTVHEGRKDYKCDKCEKKFGWKSTLLSHQKTIHHQKTVHEGRKDYGCNKCGKKFGLQTDLFKHQRTIHEGRKDYACDKCEKKFGHKQNLRTHQKTVHEGHKDYACDKCENKFSQKIALLYHQQTVHDGRKDYACDKCGKKFSQKPNLLVHQRTVHEGRKDYECDSCEKTFGQKMPLIRHQKTVHEDRKDYACEKCGKKFGMKSNLLTHIRAIHDGRKDYACDKCDKKFGQKSHLLTHIKTVHESRRDHACDKCEQKFRQKQHLRVHQKTVHGPIDIDDSGSSETRARCGRGSSSSRISMGQALEKMSLARRSSRRRSTMSLIDVQEGVVLSSRRQSSQMTPSPPPRINVISPSGGSPSPTACTPSPVRSQQRDRNDSTSSTTSILASANSAGSAGKDSGEMNPYRLTQRIVEDNFRHESLYDTPTSGNGGGNRRGSFLNLTDSARRRLSNVGDAVSRKISCTIGWKSSSIETIVQQGVALCKYYVRNRLKRSGLLTRKIGLRRTTSSKLVVESNHTAAAAAGNGHSASMMWAAHQMFPELAALGAELEKMYPELYERVGRQIGCVQFTSKQRVGDALGDIVRELMQRHGGCNWSKIVAIYAVAGGLACDCVRQGNPDFLDAIYEAMENVIEEYIAPWILIRGGWSGLDRETVFSVISFLLLFFLLLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -