Tbra004664.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- Cyp4aa1
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000928.1:577411-612571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.056 13.9 0.7 1 23 578 601 578 601 0.96 2 13 0.0013 0.056 13.9 0.7 1 23 607 630 607 630 0.96 3 13 5.3e-06 0.00023 21.4 1.8 1 23 636 659 636 659 0.97 4 13 1e-05 0.00045 20.4 0.6 1 23 665 688 665 688 0.97 5 13 8.3e-05 0.0036 17.6 0.5 1 23 694 717 694 717 0.97 6 13 6.9e-05 0.0029 17.9 0.6 1 23 723 746 723 746 0.97 7 13 0.00012 0.0052 17.1 1.0 1 23 752 775 752 775 0.96 8 13 1.7e-05 0.00074 19.7 0.5 1 23 781 804 781 804 0.97 9 13 6.9e-05 0.0029 17.9 0.6 1 23 810 833 810 833 0.97 10 13 0.0011 0.046 14.1 1.1 3 23 836 859 835 859 0.89 11 13 9.2e-06 0.00039 20.6 0.8 1 23 865 888 865 888 0.97 12 13 5.8e-06 0.00025 21.3 0.6 1 23 894 917 894 917 0.96 13 13 2.1 91 3.7 0.9 1 13 923 935 923 936 0.89
Sequence Information
- Coding Sequence
- ATGGTTGCGGTCACCAAAATCTGCGCTTCTTTTGAATGGGACCGTAACGCGCAAGAGCTATGGATCTACGTGGGCCTGATCGCGCTTCTGCTGGCCGCTTACCTCTTCAAGCGCCACATAAGAATATTTTGGACCGTGCTGAAGCTGCACGGCCCGCCCATCTATCCGTTCATCGGCAACGCCAACTGGCTCTATCGCAAAGACATTCTGGAGGTAATGGCTTACAAAGCCTACAAGGATTACGGCTCGATCGCCAGATTCTGGATCACTCTGATCCCCTACGTGGTGCTGCTCGAGCCCGAGGACATTCAGGTCGtgctctcgagctcgaaaaacacgaaaaagaTCGTGTTCTATCGTCTGCTCGACAATTTTCTCGGCAAGGGCCTGATCACGAGCGAGGTCGACACCTGGAGGACGCACAGGCGCGTGCTGCAGCCGGCCTTTCATCTCTCGGTGCTGCAGAAGTTCGTCGACTCGTTCTCCGAGTGCGCCGATCGGCTGTCGAGTAAATTAGCCAAGTGCGCGGGTAGAGAGCTGGACGTCACGAGATTCGTCAACGACGCCGTTTACGAGATCTTAAACGGTATAGGGCAAATGGTCGTGCCCTATCGTCTCATTCATCCGTGGCTACTTGTCGATTGGATCTACCGACTGACCACGACGGGCCGTCAAGAGAAGAAGCAGAGCCAAGACCTGACGGCCGCCTGCCAGCGCATGATCGACGAACTTCGCAGAAAGAAACAATCGTCCTCGTCTTCGGAAAGCGGCAGTCCGACGTTGGAAAacgagaaggagaaaaaaacgtcCCTGCTCGAGTACATGCTCGAGCAGAGCGAGAAGAATCCCGAGGGTTTCGGCGACGAGGACATCATCAACGAGTGCTGCACGTTCATGCTGGCTGGCCAGGACTCGGTGGGCACCGCCACCGCCATGAGCCTCTTTCTGCTGGCCAAGCACACCGAGTGGCAGGACAAGTGCCGCGCCGAGCTCGACCAGATATTCGCCACAGGTAGCGGCGGCGGGGATCCCGCGAGGCCCGCCACCATGCAGGATCTCAAGGCCATGAGGACGCTCGAGTGGTGCATCAAGGAGGCGCTCAGGCTCTATCCGAGCGTGCCACTGTTCGCTCGTACTCTGGGCGAGGAGGTAACAGTCGCCGGCAAGCACGTGATACCGGCTGGCTGCGGGGTAATTATACTGCCGTACACCACGCACCGGCTGCCCCATCACTTCCCGGAGCCGCACAGCTATCGCCCGGAGCGCTTCAGCCCCGAAAACTCCGAGAAGAGGCATCCCTACGCTTATTTGCCCTTCAGTGCCGGACCGCGCAATTGCATTGGAAACAAATTCGCGATACTGGAGATGAAGGCCATGATAAGCTCGATACTGAGGAAATGCAAGCTCGGCACGATCGAGGGAAAGACCGAGGTGAAGCCGAAGTTTCGTCTGACCGTCAGGGCGTCCGGCGGGCTCTGGCTGCAGCACAGCTCTTCGGTGCAAGTAATTATTCTCTCGGGGATATTCCGGCTCACGcttcgcgcgccgcgcgccgtATTCTCGCTCCTGCAGGAGGATTTTTGCGCGGTAACCCTCGGCGGTGGCTCTCTCATCGGTTCTCATTTtcgcggtggtggcggtggtgcaATAATCCCGACGCATACATCAACGCACGCGGGATCCACACGCTTGACCGACGAGCAGCTAACTGTACAcgaaggccgcaaagattacgcgtgcgacaagtgcgacaagaaatttggaaccAAATCAGATTCGTTGAAGCACCAGcaaatagtacacgaaggtcgtaaagattacgcgtgcgacaagtgcgacaagaaatttggaaccAAATCAGATTCGTTGAAGCACCAGcaaatagtacacgaaggtcgtaaagattacgcgtgcgacaagtgtgacAAAAAGTTTGGATACAATTCACATTTGCTCGTTCATCAAAGGACTGTACACGAAggacgcaaagattacgcgtgcaacaattgcgagaagatgtttggaaaaaaatcgaatttattaacgcaccaaaggatagtacacgaaggtcgcaaggattatgcatgcgacaattgcgagaagaaatttggaaaaaaatcgagtttgttaatgcaccaaaggatagtacacgaaggtcgcaaggattatgcatgcgacaattgcgagaagaaatttggaaaaaaatcgagtttgttaaTGCACATAAAGACGGTACACgaaagttgcaaagattacgcgtgttacgcgtgtgacaagaaatttggacaaaaatcgaagttGTTAActcaccaaaggacagtacacgaaggtcgcaaagattacgcgtgcaacaattgcgagaagatttttggaaaaaaatcgaatttattaacgcaccaaaggatagtacacgaaggtcgcaaggattatgcatgcgacaattgcgagaagaaatttggaaaaaaatcgagtttgttaaTGCACATAAAGACGGTACACGAAaattgcaaagattacgcgtgtgacaagaaatttggacaaaaatcgaagttGTTAACTCACCAaaggacaatacacgaaggtcacaaaaattacgcatgtgacaagtgtgaaaagaaatttggagaaaaatcaacattgattagacaccaaaggacagtccacgaaaattgcaaagattttgcgtgtgacaagtgcgagaagatgtttggaagaaaatcaaatttactcaATCACCAAAAGAtcatccatgaaggtcgcaaagattacaaatGCGACGAGTGTGaacagaaatttggacataaatgGATCTCGTTTTCTTGCTCAACCGCGTATATACAGTATATCCGCAACGAGAGCGGAGATCGTCGAGTGGCTGTCGTTCGACGCTCGCGTTATTATCCGCTTGAAAAGCTCCGAAAGTGGACTGGCATACGCTTCAGGCGAGGCGAGGCAAGGCAAGTCACAACGAGGTGGTCAAGAGCAGCTGTTCAACGTGACTCTCCACCACTGCGGAttaagtttaatttatatagcGCCGCGCGCCCGCGTGAAGGATATTTTCACCTCTCCCATTATGTAAAGATCATTCTCAGCGATTTCGAGCGAATCGAAATCTTGTGCCGATCGGGAGAAATGATTCCTCGAGACCGAATAACGATGGCCCAAGACGCTCAAAGATATTTAAGAAAATTGGAAATTATGCGCCGAGAGGTCGATTGGCAGGTGGAAAAAGAACGAAGAATCTTTATAAGTCGACTTTACGACTTGATCGACGCCTGGACGGAACAAGCTGTAATTTCCAAACGACAAAAAACCCAACTCGATTTTTCTATCGAACTGCAAGATATTTTACAGCCAAAAGAACTCGACGAAATTCTCATCGATTCGCTGAAGTCCAAAACCGAGTCAGTTGTAAGGGTATTCATTCAGTTCGTGATCGAAACCGGCTACAAGGATGAGCCCGAGCTCAACGAAGACTGCGGGCCGCTGGTTCGTCGCGCCACACCGTTACATCACGCGGCTAGAGGCAGATCGGGCTTCAGGCGTGCCCTAGTCCCGGATCTCTTTGATATTTATCAGAGATACGACGTAAACTACATCGACGAGTCCGGCTTGACtcatttccatgtggcctgcatgTCCGGCTGCGCCGACGTCGTCGAGAAGTTTCTCGAGcacggccaggatcccaactGCATCTGGCGCGAGACGGGTGACTCGCCGCTGCACATGGCTTCGACCTACGGATACATGAGCATCGTCCACATGCTGCTGAGAAGCGGCGCGGATCCGAACTGGGCCAACAAGCGGGGAAGTACGCCTCTGCATGTCATCTCCCAGTGTAGCCACAAGGGTTTGGATATGGCCATATGGTTGTCCGAGGCCAGCCACGACAAGTATCATCCGGTTCGGTTCGACGCCCAGGACGAGGTGGGCAACACagcgctgcacttggctctgcgcTGCGGCAGCACGGACCTCTTCGGCTGGCTGCTGCGGAGAATCACCAAGCCGAATCTGGTGGACGTGGAGGGATGGACTCCGCTCCACGTCATCTGCGACAGAGAGGACGAGCATCActgcgacgaggacgaggacatTGACGATTTTTCCTTATTCTTCTGCTCCCGCTACGAGATCACCTTGGTGAATCTATTTCTGGAGCTCCACGGCGACGAAGTGCAAGTCGACGCGCGAGACGCCTTCGGCAATACGGCACTGCACGTGGCCCTGGTCCGCAAGCGCCCTGGACgcggccgagctgctgctgaggagaggcgccgatccgaatctggccaacgTCCAGGGCGTGACGCCTCTGCACTTGATCTGCCAGAACGACCACACGGATCGCCTGATGAAGAAGCTGTTCGAGTACTGCGACGCGAGGAATCAGCACGTGGACGTCGACGCCTGGGACCACGAGGGCCAGACAGCcctgcaatgggccgtggctAG
- Protein Sequence
- MVAVTKICASFEWDRNAQELWIYVGLIALLLAAYLFKRHIRIFWTVLKLHGPPIYPFIGNANWLYRKDILEVMAYKAYKDYGSIARFWITLIPYVVLLEPEDIQVVLSSSKNTKKIVFYRLLDNFLGKGLITSEVDTWRTHRRVLQPAFHLSVLQKFVDSFSECADRLSSKLAKCAGRELDVTRFVNDAVYEILNGIGQMVVPYRLIHPWLLVDWIYRLTTTGRQEKKQSQDLTAACQRMIDELRRKKQSSSSSESGSPTLENEKEKKTSLLEYMLEQSEKNPEGFGDEDIINECCTFMLAGQDSVGTATAMSLFLLAKHTEWQDKCRAELDQIFATGSGGGDPARPATMQDLKAMRTLEWCIKEALRLYPSVPLFARTLGEEVTVAGKHVIPAGCGVIILPYTTHRLPHHFPEPHSYRPERFSPENSEKRHPYAYLPFSAGPRNCIGNKFAILEMKAMISSILRKCKLGTIEGKTEVKPKFRLTVRASGGLWLQHSSSVQVIILSGIFRLTLRAPRAVFSLLQEDFCAVTLGGGSLIGSHFRGGGGGAIIPTHTSTHAGSTRLTDEQLTVHEGRKDYACDKCDKKFGTKSDSLKHQQIVHEGRKDYACDKCDKKFGTKSDSLKHQQIVHEGRKDYACDKCDKKFGYNSHLLVHQRTVHEGRKDYACNNCEKMFGKKSNLLTHQRIVHEGRKDYACDNCEKKFGKKSSLLMHQRIVHEGRKDYACDNCEKKFGKKSSLLMHIKTVHESCKDYACYACDKKFGQKSKLLTHQRTVHEGRKDYACNNCEKIFGKKSNLLTHQRIVHEGRKDYACDNCEKKFGKKSSLLMHIKTVHENCKDYACDKKFGQKSKLLTHQRTIHEGHKNYACDKCEKKFGEKSTLIRHQRTVHENCKDFACDKCEKMFGRKSNLLNHQKIIHEGRKDYKCDECEQKFGHKWISFSCSTAYIQYIRNESGDRRVAVVRRSRYYPLEKLRKWTGIRFRRGEARQVTTRWSRAAVQRDSPPLRIKFNLYSAARPREGYFHLSHYVKIILSDFERIEILCRSGEMIPRDRITMAQDAQRYLRKLEIMRREVDWQVEKERRIFISRLYDLIDAWTEQAVISKRQKTQLDFSIELQDILQPKELDEILIDSLKSKTESVVRVFIQFVIETGYKDEPELNEDCGPLVRRATPLHHAARGRSGFRRALVPDLFDIYQRYDVNYIDESGLTHFHVACMSGCADVVEKFLEHGQDPNCIWRETGDSPLHMASTYGYMSIVHMLLRSGADPNWANKRGSTPLHVISQCSHKGLDMAIWLSEASHDKYHPVRFDAQDEVGNTALHLALRCGSTDLFGWLLRRITKPNLVDVEGWTPLHVICDREDEHHCDEDEDIDDFSLFFCSRYEITLVNLFLELHGDEVQVDARDAFGNTALHVALVRKRPGRGRAAAEERRRSESGQRPGRDASALDLPERPHGSPDEEAVRVLRREESARGRRRLGPRGPDSPAMGRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -