Tbra011744.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000725.1:392460-403772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.002 0.085 13.3 0.2 1 23 384 407 384 407 0.97 2 15 1.1e-05 0.00047 20.4 0.7 1 23 467 490 467 490 0.97 3 15 0.00041 0.017 15.4 3.7 1 23 500 522 500 523 0.96 4 15 7e-06 0.0003 21.0 0.2 2 23 530 552 529 552 0.95 5 15 7.9e-05 0.0033 17.7 4.0 1 23 562 585 562 585 0.97 6 15 9.7e-06 0.00041 20.6 0.2 1 23 591 614 591 614 0.96 7 15 0.014 0.6 10.6 1.1 1 23 620 643 620 643 0.96 8 15 9.4e-06 0.0004 20.6 0.4 1 23 648 671 648 671 0.98 9 15 0.0004 0.017 15.5 2.7 2 23 678 700 677 700 0.94 10 15 3.4 1.5e+02 3.1 2.0 3 23 710 731 708 731 0.90 11 15 0.0016 0.069 13.6 1.1 3 23 740 761 738 761 0.96 12 15 6.3e-05 0.0027 18.0 0.4 1 23 775 797 775 797 0.98 13 15 0.00084 0.036 14.5 3.4 2 23 804 826 803 826 0.96 14 15 4.5e-05 0.0019 18.5 0.4 1 23 831 854 831 854 0.97 15 15 0.00084 0.036 14.5 1.6 2 23 861 883 860 883 0.95
Sequence Information
- Coding Sequence
- ATGCATGCCGGACGAGCGAAGAAACAACAGAACGAGTTCAGCTCTACCTACGCTCTTTTTTGCGAGCGATGGAGAGATCTGACGTTACGGGCCTGGTCTCATACGACTACCGAAGACGTGTGCGCCTACTTCAAGAGCAAGAAGGACTTGAAGATGGACGACGTGATACGCGTCCTCGACCGATGCGCCCAGTACCTGACTCACATATGCTTGGATGACTCCCATCATAAAATCAAAGGCGAGAAGAACATACGATGCGTGGAGTTGTTGTTCAAAATATTGACCGAGAAAGCCGAAAGGATGATAAAGATACACTGGGATTTCCAAGTTCCCATCGAGCCGCTAATGAAGTTTTACGAGGCGAGGATACATCAATTGGAGGAGCACGACAACAAGGACTACTGTACCGTGAAAACCGATAGAGTGATGAGATTACTGAAGAAGGCGCAAAACTTGAAAACTTTCAACTGGACCGTGGGCATTCCCGAGCGATGCCTCTTTTATCGGACTAGAAGTATACTCGAAGCATTACCGGAAGATTTAACAACTTTGAACATCAACTGCACGGAGAGCGACTTCTCGTTAGAATCCCTGTTCCGAGGGGCAAGGCTGTCAACGGACCGTACCGAGGGCACCGCTGCCCAATTACCGCCGACGCTGCAGCACGTCGAAATCGAAAGGTTCGGCGACCGAGAATTCATCTGTTGCTTGCGCAGCGTGGAAAAGTTGCGTTACTTGTCGATCACCGGCGGAAAGTTTCGCGCGAACGATTTGGTCCAACTGGTCGCAAAAAATCCAGACCTCGAGCACTTGGCGTTGCGCAACATGGACTACTTAACCGAGGGACAATTCGAGATAGTATCCAAATTGCCGAATTTGACGTCTCTGCATTTGCACAAATTACCGAGGCTGGACGGACCTTCGTTGACGAATTTGAAACAGCTCCGAGTAATTCATTTGAGCTATTGTCGCAGAGTGTGGCTGGAGAGTCTGGTCGAGTTGGTCGAAGCGGCAGAGAATTTGCAAGAGATTCAGATCTCGGGACACCCGACGCCCAATACGGGGGCGCTGCGCAAATGTTTAGACGCCATAGCCGAACAAAGGGAATGCACTATCACGTTGGCGacagtccatgaaggtcgcaaagactacgcatgcggtaattgcgagagaaaatttggactaaaaaaagatttgatcggacaccaaaggacagtacacgaaggtcgcaaggattacatAGGATACTCGTGTGCGTCCTCTGCTCGACGCACGTCTCGTCAATATCAAACCCGCGGTAGAGCCGGCACAGCGTGCGCACGTCGTCGACATATGGCTGCGATGAACGATCCGCCGcatccaccaccaccagcaccgGGCGAGGGGCCCGCGAAGCGGTACTTCTGCGACGAGTGCGGCTCGGGCTTCACGCGGCGCGCCAGCCTGACGAGGCACACGAGGTCGGTGCACAACACCGATCGGGAGGAGGGCGAGGGCTACGAGTGCCGCTACTGCTATCGAGTGTTCAGCAGGCGCGACCTCAGGCTGAGGCACATACGCGAGCATCACGCGCACGCCCGGACCAAGTCGTGCCCCTACTGCGGCAAGACGTTCGCGCAGGCGAGCTCGATGCGCTACCACGTGCGCGCCGAGCATCTCGGGGGCCGGGGCGCCGCCCGTCGCCACCAGTGCGACGAGTGCCAGCGCAGCTTCGTCACGGAGCACCATCTGCGCGAGCACGCGAGGGTGGAGCACGCGCGGCCCAGGGCTCACCCGTGCCCGGACTGCGACAAGAGCTATCCGACCGAGGCCCGACTGAACAGGCACGTGAGGTCGGCCCACGACGTGCCGCGCAATCACGAGTGCGCGAGGTGCGAGGCCCGCTTCGTCTACAGGCACGAGCTCGCGAGGCACGAGAAGGTGGCCCACGAGGGCTTCCGCTATCCGTGCGGCGTCTGCGACAAGGCCTACACGACGAGATTCGACCTCAAGGACCACTACAAGACGGCGCACATGGGCAGAAGGGATTGGAAGTGCGACCACTGCGGCAAGCAGTTCGGCCGCAAGAAGTTCATGCGCAAGCACATAATCCAGCTGCACGGCGAGGGCGCGAGCACCGAGTGGCCGTGCAAGTGCTGCGAGACGGTGTGCGCGAGCCGCGAGGAGCTGGAGCTGCATCACCAGGCCGCCCACATGGCCCTAACGAACGAGTGGGCCTGCAAGCAGTGCGACCAGAAGTTCAACGAGAAGAGGTTCCTGATCCGTCACGTCAAGCGCTTGCACAAGGAGCGCGCGTCGACGTCCGtggccgccaccgccgcgttCCCCTGCGACCTCTGCGAGAAGCAGTTCGCCAAAAAATTCGACCTGATCGATCACCTGAGGTCGCACAAGAGGGGCGCCGAGTGGTGCTGTCCCCGTTGCGACATGCGCTTCGCCAAGAAGACGAGCCTGGTCAAGCACAAGCGCACGACCCACGAGGGCGTGACCTATCCCTGCGAGATCTGCGGCAGGCAGTACAGGGCCAAGTACGAGCTGGCGCATCACATCAAGTCGATCCACCTGAACAAGGCCGACTGGAGGTGCGAGTTCTGCGACAAGGACTTCAAGATGAAGAAGTACTTGGTGAATCACAAGAGGAACGTCCACAAGGTCAACGATTGA
- Protein Sequence
- MHAGRAKKQQNEFSSTYALFCERWRDLTLRAWSHTTTEDVCAYFKSKKDLKMDDVIRVLDRCAQYLTHICLDDSHHKIKGEKNIRCVELLFKILTEKAERMIKIHWDFQVPIEPLMKFYEARIHQLEEHDNKDYCTVKTDRVMRLLKKAQNLKTFNWTVGIPERCLFYRTRSILEALPEDLTTLNINCTESDFSLESLFRGARLSTDRTEGTAAQLPPTLQHVEIERFGDREFICCLRSVEKLRYLSITGGKFRANDLVQLVAKNPDLEHLALRNMDYLTEGQFEIVSKLPNLTSLHLHKLPRLDGPSLTNLKQLRVIHLSYCRRVWLESLVELVEAAENLQEIQISGHPTPNTGALRKCLDAIAEQRECTITLATVHEGRKDYACGNCERKFGLKKDLIGHQRTVHEGRKDYIGYSCASSARRTSRQYQTRGRAGTACARRRHMAAMNDPPHPPPPAPGEGPAKRYFCDECGSGFTRRASLTRHTRSVHNTDREEGEGYECRYCYRVFSRRDLRLRHIREHHAHARTKSCPYCGKTFAQASSMRYHVRAEHLGGRGAARRHQCDECQRSFVTEHHLREHARVEHARPRAHPCPDCDKSYPTEARLNRHVRSAHDVPRNHECARCEARFVYRHELARHEKVAHEGFRYPCGVCDKAYTTRFDLKDHYKTAHMGRRDWKCDHCGKQFGRKKFMRKHIIQLHGEGASTEWPCKCCETVCASREELELHHQAAHMALTNEWACKQCDQKFNEKRFLIRHVKRLHKERASTSVAATAAFPCDLCEKQFAKKFDLIDHLRSHKRGAEWCCPRCDMRFAKKTSLVKHKRTTHEGVTYPCEICGRQYRAKYELAHHIKSIHLNKADWRCEFCDKDFKMKKYLVNHKRNVHKVND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -