Basic Information

Insect: Trichogramma brassicae
Gene Symbol: CarT
Assembly: GCA_902806795.1
Location: CADCXV010000983.1:1359754-1382963[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0059 0.25 11.8 0.7 1 23 15 38 15 38 0.94

2 18 0.077 3.3 8.3 0.2 8 23 51 67 44 67 0.87

3 18 0.068 2.9 8.5 4.1 1 23 73 96 73 96 0.97

4 18 3.7e-05 0.0016 18.7 1.7 1 23 102 125 102 125 0.97

5 18 0.00024 0.01 16.2 6.0 1 23 131 154 131 154 0.98

6 18 5.8e-05 0.0025 18.1 1.5 1 23 160 183 160 183 0.97

7 18 1.5e-06 6.5e-05 23.1 1.1 1 23 189 212 189 212 0.97

8 18 0.00048 0.021 15.2 2.9 1 23 218 241 218 241 0.96

9 18 0.00029 0.012 15.9 0.7 1 23 247 270 247 270 0.95

10 18 0.0076 0.32 11.4 1.8 1 23 276 299 276 299 0.96

11 18 0.00054 0.023 15.1 1.8 1 23 305 328 305 328 0.95

12 18 4.2 1.8e+02 2.8 0.0 8 23 341 357 335 357 0.90

13 18 0.00051 0.022 15.1 1.6 1 23 363 386 363 386 0.97

14 18 2.8e-05 0.0012 19.1 1.9 1 23 392 415 392 415 0.98

15 18 1.7e-06 7.4e-05 22.9 1.7 1 23 421 444 421 444 0.96

16 18 0.0012 0.053 13.9 1.3 1 23 450 473 450 473 0.97

17 18 8.7e-06 0.00037 20.7 0.6 1 23 479 502 479 502 0.96

18 18 8.8e-05 0.0037 17.5 2.2 1 23 508 531 508 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0059	0.25	11.8	0.7	1	23	15	38	15	38	0.94
2	18	0.077	3.3	8.3	0.2	8	23	51	67	44	67	0.87
3	18	0.068	2.9	8.5	4.1	1	23	73	96	73	96	0.97
4	18	3.7e-05	0.0016	18.7	1.7	1	23	102	125	102	125	0.97
5	18	0.00024	0.01	16.2	6.0	1	23	131	154	131	154	0.98
6	18	5.8e-05	0.0025	18.1	1.5	1	23	160	183	160	183	0.97
7	18	1.5e-06	6.5e-05	23.1	1.1	1	23	189	212	189	212	0.97
8	18	0.00048	0.021	15.2	2.9	1	23	218	241	218	241	0.96
9	18	0.00029	0.012	15.9	0.7	1	23	247	270	247	270	0.95
10	18	0.0076	0.32	11.4	1.8	1	23	276	299	276	299	0.96
11	18	0.00054	0.023	15.1	1.8	1	23	305	328	305	328	0.95
12	18	4.2	1.8e+02	2.8	0.0	8	23	341	357	335	357	0.90
13	18	0.00051	0.022	15.1	1.6	1	23	363	386	363	386	0.97
14	18	2.8e-05	0.0012	19.1	1.9	1	23	392	415	392	415	0.98
15	18	1.7e-06	7.4e-05	22.9	1.7	1	23	421	444	421	444	0.96
16	18	0.0012	0.053	13.9	1.3	1	23	450	473	450	473	0.97
17	18	8.7e-06	0.00037	20.7	0.6	1	23	479	502	479	502	0.96
18	18	8.8e-05	0.0037	17.5	2.2	1	23	508	531	508	531	0.97

Sequence Information

Coding Sequence: atgatcaGCCATCGAAACACAATTCGCAATGAACAAATAGGTTACCCATgtgaccagtgcgagaagaaatttgtgaaaagaTCGATTTTGTTTGCGCACCAACAATTCGTACACAAAGATCAggaagatttcacatgcgacaaaagcgagaagaaatttggagatcgaagcaatttgaacgaacaccaaaaaatagtccacgaaggtcgcaaagattttgattGCGACAAGTGCGCAAGAAAATTTAGATGTAAATcatatttgcttttgcaccaaaagacagtacacgagagtcgcaaaaatttcgcatgcgacaagtgcgagaaaaaatttgtattcaaatcgactttgcttactcaccaaaagacaatccacgaaaatcccaaagattacgtatgcaacaagtgcgaaaaaaaatttggacacaaatgtaatttactcacccaccaaaaaacagtccacgaacgtcgcaaagattttgcatgtgacaagtgtgaaaaaaaattcggaaaaaaaacgaacttgCTTTctcaccaaaaaacagtacacgaaggtcgcaaaaattacgcatgcaaccagtgcgagaagaaatttggacaaaaatcggatttgttaaagcaccaacggacagtacacgaaggtcgcaaagattttgcatgcgtcaaatgcgaaaagaaatttgagttccgaagtcatttgagtaaaCACCAACTATCAGTACACAAAAGCTGcaatgattttgcatgcgaccaatgcgcgaagaaatttgtaaaaaaatcaagtttggttacacaccaaaaattagtacacaaagatcgtgaAGATTTCatttgcgacaagtgcgaaaggaaatttgaaaataaatcaattttacttaagcacaaaaaaatattccacgaagttttcaaagattacttatgtgaaaagtgcgcgaaaaGATTTGATACTAAACATGGATTGCGTTTGCACATAAAGTCCGTAcatgatggtcgcaaagattttgcatgcgacaagggTGAGGagaaatttgggaaaaaagaaagtttgctcctacaccaaaagacaggcCATAAAAGTCACAAAGactttgcatgcgacaaatgcgaaagtAAATTTGAACGAAAAGGGCACCTGCTcattcaccaaaagacagtacacgaaggtcgcaaagattacacgtgcgataattgcgagaagaaatttggacagaaaccgcatttgctcttacaccaaaggacagtacacgaaggtcggaaagattatttatgcgacaagtgcgagaaaaaatttggggataaaagcaatttgacaaaacatcaaaaaacagtccacgaaggccgcaaaaatttcgcatgcgacaagtgcgaaagtaaatttggacaaaaagggcATCTGCTCAttcatcaaaagacagtacatgaaggtcgcaaagattacgtttgtgacaagtgtgagaagaaatttacaataCGAAGtaatttgatcaaacaccaaaacgcaatccacgaaggtcgtaaaaattttgattgtgaCCATTGCGatcagaaatttggactaaaatcgaatttgcttactcaccaaaagacagtccacgaaggtcgtaaagatttcggaTGTggcaaGCGTGTAACCAGAGAGGAGTCGAAGTTCTGCCTCGACGCCGCTTCCCAATCCAATATCCGATCGTTCTGTACCGCTCCGATTAGCTCTCGCGTATTATATTGTGGGGACTTTGATTCGAATTCTTGTACTCCTCGAAGCCGCGGCGATGATCGTTTACACAAGtgcacaacgacgacgacgatgatgttACGAGCCTTCACGATTTTTCGAGTTCGATTAAACGTGGCTGAAATCGTCGTTATAGTACGCGCGCAGACATCGGAGCAAACAGCCCAACGAATGTATCATCCCTGGGATTCGCAACTTTATAGAGCCGCAGCGGCGCCCAAAGGAGACATGACGCTGCAACAGGAGAAAAAGGCCGAGGAGGGCACGGAGGGGACCAGGCCTCGCATCGAGACCTTCGACGACATACTGCCTTACATCGGCGAAGCCGGCCGCTATCAGTGGTTCTTGTTCGTCATACTGCTGCCGTTCACCTTCGTCTACGCATTTCTCTATTTCGCCCAGTTCTTCATCACCCTCGTGCCGGAGGAGTACTGGTGCAAAGTGCCCGAGCTCATGAACGCCAATCTCACCGATAAACAAATACTCACCCTTTCAGTGCCGCCGCCACAATTCGAAGAATTGAACGGCGACCATCCGTCCAATTATTCGCGATGCTCGCAATACATCACGAATTGGGACGAGGTGCTGAGGTCCGGCAGGACGGAGGCCGATCCTTCCTGGACGATCGGCAAGTGCCAGAACGGCTGGAGCTTCAATCTCACCAACGTGCCATATCTGTCGATCGCAGCTGAGCTCGAATGGGTGTGCGACCAGTCCTACCTGGGCACGACGGCCCAGTCGGCCTTCTTCGCCGGCAGCATCGTCGGCGGCCTGATCTTCGGCTACATAGCCGATCATTACGGCCGCCTGCCCGCCCTCGTGCTCTGCAACGGGGTCGGCTTCTTCGCTTCGATCGGCACGGCCTTCTGCACGAGCTTCTGGTCCTTCGTCCTGTCGCGCTTCATCGTCGGCACGTCGTTCGATAACTGCTTCAAcatcatcttcatcatcaTCATCGAGTACGTGGGTCCGCGCTACCGCACCCTCATGGCCAACATGTCGTTCGGCATCTACTTCGCCTTCGCGTCGAGCATACTGCCCTGGATCGCCTACTGGATCTCCGACTGGAAGATCCTGAGCGTGGTGAGCGCGCTGCCGCTCGTCGTAGCCTTCGTCACGCCCTGGATCGTCCCCGAGAGCGCCCGCTGGTACATCATGAACGGCCGCGTCGACAAGGCCATCGAGCTGCTCAAGAAGTTCGAGAAGGTCAACAAGAAGACGGTGCCGCCGGAGGTGTACGAGGAGTTCGCCAGGAGCTGCGACAAGGCCATGAAGCAGAGCGACAAGCAGGCCGGCTACAATTACACCGTGGTCGATCTATTCAAGCTGCCCAGGCTCGGACGCATTACCACGATCCTCGTTATATACTGGTcagtattttatattatattatacatttttcgcgATCGTATGTGA
Protein Sequence: MISHRNTIRNEQIGYPCDQCEKKFVKRSILFAHQQFVHKDQEDFTCDKSEKKFGDRSNLNEHQKIVHEGRKDFDCDKCARKFRCKSYLLLHQKTVHESRKNFACDKCEKKFVFKSTLLTHQKTIHENPKDYVCNKCEKKFGHKCNLLTHQKTVHERRKDFACDKCEKKFGKKTNLLSHQKTVHEGRKNYACNQCEKKFGQKSDLLKHQRTVHEGRKDFACVKCEKKFEFRSHLSKHQLSVHKSCNDFACDQCAKKFVKKSSLVTHQKLVHKDREDFICDKCERKFENKSILLKHKKIFHEVFKDYLCEKCAKRFDTKHGLRLHIKSVHDGRKDFACDKGEEKFGKKESLLLHQKTGHKSHKDFACDKCESKFERKGHLLIHQKTVHEGRKDYTCDNCEKKFGQKPHLLLHQRTVHEGRKDYLCDKCEKKFGDKSNLTKHQKTVHEGRKNFACDKCESKFGQKGHLLIHQKTVHEGRKDYVCDKCEKKFTIRSNLIKHQNAIHEGRKNFDCDHCDQKFGLKSNLLTHQKTVHEGRKDFGCGKRVTREESKFCLDAASQSNIRSFCTAPISSRVLYCGDFDSNSCTPRSRGDDRLHKCTTTTTMMLRAFTIFRVRLNVAEIVVIVRAQTSEQTAQRMYHPWDSQLYRAAAAPKGDMTLQQEKKAEEGTEGTRPRIETFDDILPYIGEAGRYQWFLFVILLPFTFVYAFLYFAQFFITLVPEEYWCKVPELMNANLTDKQILTLSVPPPQFEELNGDHPSNYSRCSQYITNWDEVLRSGRTEADPSWTIGKCQNGWSFNLTNVPYLSIAAELEWVCDQSYLGTTAQSAFFAGSIVGGLIFGYIADHYGRLPALVLCNGVGFFASIGTAFCTSFWSFVLSRFIVGTSFDNCFNIIFIIIIEYVGPRYRTLMANMSFGIYFAFASSILPWIAYWISDWKILSVVSALPLVVAFVTPWIVPESARWYIMNGRVDKAIELLKKFEKVNKKTVPPEVYEEFARSCDKAMKQSDKQAGYNYTVVDLFKLPRLGRITTILVIYWSVFYIILYIFRDRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -