Tbra008057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
sau
Assembly
GCA_902806795.1
Location
CADCXV010001209.1:37442-58218[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.013 0.56 10.7 1.4 1 23 82 105 82 105 0.96
2 16 2.1e-05 0.0009 19.5 1.1 1 23 111 134 111 134 0.98
3 16 0.0024 0.1 13.0 4.8 1 23 140 163 140 163 0.97
4 16 2.3e-05 0.001 19.4 3.5 3 23 171 192 169 192 0.97
5 16 4.4e-05 0.0019 18.5 1.0 1 23 198 221 198 221 0.97
6 16 0.0024 0.1 13.0 4.8 1 23 227 250 227 250 0.97
7 16 2.3e-05 0.001 19.4 3.5 3 23 258 279 256 279 0.97
8 16 8.4e-07 3.6e-05 23.9 1.2 1 23 285 308 285 308 0.98
9 16 0.00024 0.01 16.2 0.5 1 23 314 337 314 337 0.97
10 16 0.25 11 6.7 0.1 1 23 343 366 343 366 0.95
11 16 1.9e-05 0.00079 19.7 2.0 1 23 372 395 372 395 0.97
12 16 1.7e-05 0.00072 19.8 1.4 1 23 401 424 401 424 0.97
13 16 9.2e-05 0.0039 17.5 5.4 1 23 430 453 430 453 0.98
14 16 6.3e-07 2.7e-05 24.3 1.0 1 23 459 482 459 482 0.98
15 16 0.0022 0.093 13.2 0.7 1 23 508 531 508 531 0.97
16 16 0.0011 0.046 14.1 1.5 1 23 537 560 537 560 0.95

Sequence Information

Coding Sequence
atgtttcaACAAAGAATTTGTGAAACGCTTATCTCTGGCGCGCGATCggaactcgcgcgcgtatatatgCCTACTATACCACTACTACTCGGGTGCGCGCGTGCCCGAGACATATTACATCGCGCGGGGCACACGATCGAGTCATGCTGCAGCGGCAGCCCCGCGAGAAAATCGCGTCATCGAACGATCCCACATACCGGGACACGTACACACGTTATGGTAGTGCAAGTGTATTACCGagattacttatgtgaacaGTGCGCAAAGAGATgtggaaataaacagagtttgttgttgcacataaagacagtccacgagggtcgcaaagattttgtatgcgacaagtgcgaaagtaAATTTGGAAGGAAATcggatttgttgaagcaccaaaggacagttcacgatgatcgtaaaaatttcgcatgcgacagatgcgagaagaaatttgaacatAAACAGCATTTGCTCATccacaaaaaaacagtccacgagggtcgtaaagatatcgcatgcaacaaatgcgagaaaaaattcggacacaaatcacatttgcttgtccaccaaaggacagttcatgaaggtcggaaagattttgcatgcgacaagtgcgaaagtaAATTTGGAAGGAAATcggatttgttgaagcaccaaaggacagttcacgatgatcgtaaaaatttcgcatgcgacagatgcgagaagaaatttgaacatAAACAGCATTTGCTCATccacaaaaaaacagtccacgagggtcgtaaagatatcgcatgcaacaaatgcgagaaaaaattcggacacaaatcacatttgcttgtccaccaaaggacagttcatgaaggtcggaaagattttacatgtgacaagtgtgacaAAAAATTCGGAAGCAAATCAGAATTGTTGAGGCACCAATTGACAGTGCACGAAaatcggaaagattacgcatgcgataggtgcgagaaaaaatacgggggcaaatcagatttgttaaagcaccaaaaaacagtacacgaaggtcgcaaagattacgcatgcgataggtgcgagaaaaaatttggatacatAGGGGTTTTGCTGTTACACGAAAAGACAATTCACGAAGGgcgaaaagatttcgcatgccaCAAGTGCgtaaagaaatttacacaaaaagggAATTTGCTCATTCAcgtaaaaacagtccatgaaggtcgcaaagattacgcgtgcgacaagtgcgagaagaaatttgggaataaaacatatttgaaaatacaccaaaagacagtgcatgaaggttgcaaagattactcgtgtgacaagtgcgagaagaaatttagacaTAAAAATACGTTAtttttgcaccaaaagacaatccatgagggtcgaaaagattactcatgtgacgATTgtcagaagaaatttggaagacCAACAGAATTGActagacaccaaaagacagtacaccaaggtcgtaaagatttcgcatgtggcaagtgcgagcagaaattcggacaaaaaatccacgaaggtcaaaaagattacgcatgcgacacaTGCGAGAAAACATTCGGATTAAAATCGGATATGCTCTACCACcgaaagacagtacacgaaggttgtaaagattactcatgtggCAAATGTGAGacaaaatttggaaaaaattcgcaTCTGATAGAGCACCGAAaagcagtccacgaaggtcgtaaagattttgcatgcgacagGATGAATCGCGGCGACGGCCTGGTGCAGAGGCGACGCGCCACGACCGCGTCTAGTCAGGACGGCGGCGGCGCCTCGTCGCAGGGCTCGGGCAACGAGGCCTCGGGCCAGTCGGGCGACAGACAGTCCCCCGGCGACGGCGACTCGGGCTCCCTCAAGGATCTCAACTCCAATCCAGCTGTCGACGAGGACAGCGACAAGGAGACCAGGCTCACCCTCATGGAggaggtgctgctgctcggcctCAAAGACAAAGAGGGCTACACTTCGTTCTGGAATGATTGTATAAGTTCGGGCTTGCGAGGTTGTATATTGGCAGAATTGGGCCTGAGAGGACGCGTAGAACTAGAAAAGGCTGGAATGAGAAAAAGAGGTATTTTAACaagaaaattactattaagAAATAGTTCTCCAACCGGAGACGTACTGCTGGATGAAGCGTTGAAACATCTCAAAGAAACAGATCCACCAGAGACTGTTCAGAGTTGGATAGAATATTTAAGCGGAGAAACATGGAATCCTCTGAAGCTGCGTtaccaattaaaaaatgtgagaGAAAGGCTTGCCAAAAATCTTGTCGAAAAAGGAGTATTGACaacagaaaaacaaaattttcttttgttcgATATGACAACTCATCCATTAACAGACAATCTTGCGAAGACTCGATTAGTCAGAAAGATTCAGGACGCAGTTCTCAGTCGATGGGTCAACGACGCGGGTCGCATGGACCGGCGCACCCTTGCCTTGATAGTCCTCGCCCACGCCGCGGATGTCCTAGAGAACGCGTTCGCGCCACTGtccgacgacgactacgaggTGGCCATGCGTCGAGTGAGGACGCTGCTCGATCTCGACTACGAGGCCGAGTCGAACAAGCCAAACGCCAATCCCGTGCTGTGGGCCGTCTTCGCCGCTTTCACGAAGTAA
Protein Sequence
MFQQRICETLISGARSELARVYMPTIPLLLGCARARDILHRAGHTIESCCSGSPARKSRHRTIPHTGTRTHVMVVQVYYRDYLCEQCAKRCGNKQSLLLHIKTVHEGRKDFVCDKCESKFGRKSDLLKHQRTVHDDRKNFACDRCEKKFEHKQHLLIHKKTVHEGRKDIACNKCEKKFGHKSHLLVHQRTVHEGRKDFACDKCESKFGRKSDLLKHQRTVHDDRKNFACDRCEKKFEHKQHLLIHKKTVHEGRKDIACNKCEKKFGHKSHLLVHQRTVHEGRKDFTCDKCDKKFGSKSELLRHQLTVHENRKDYACDRCEKKYGGKSDLLKHQKTVHEGRKDYACDRCEKKFGYIGVLLLHEKTIHEGRKDFACHKCVKKFTQKGNLLIHVKTVHEGRKDYACDKCEKKFGNKTYLKIHQKTVHEGCKDYSCDKCEKKFRHKNTLFLHQKTIHEGRKDYSCDDCQKKFGRPTELTRHQKTVHQGRKDFACGKCEQKFGQKIHEGQKDYACDTCEKTFGLKSDMLYHRKTVHEGCKDYSCGKCETKFGKNSHLIEHRKAVHEGRKDFACDRMNRGDGLVQRRRATTASSQDGGGASSQGSGNEASGQSGDRQSPGDGDSGSLKDLNSNPAVDEDSDKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILAELGLRGRVELEKAGMRKRGILTRKLLLRNSSPTGDVLLDEALKHLKETDPPETVQSWIEYLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTDNLAKTRLVRKIQDAVLSRWVNDAGRMDRRTLALIVLAHAADVLENAFAPLSDDDYEVAMRRVRTLLDLDYEAESNKPNANPVLWAVFAAFTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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