Tbra012314.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000901.1:174545-179985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00045 0.019 15.3 0.5 1 23 45 68 45 68 0.94 2 20 0.035 1.5 9.4 0.2 1 23 74 97 74 97 0.95 3 20 6.1e-05 0.0026 18.0 0.7 1 23 127 150 127 150 0.95 4 20 0.0025 0.11 13.0 1.5 2 23 157 179 156 179 0.96 5 20 0.00016 0.0069 16.7 2.0 1 23 185 208 185 208 0.97 6 20 1.4 61 4.3 0.0 7 21 361 375 355 376 0.89 7 20 6.4 2.7e+02 2.2 0.0 7 22 737 752 737 752 0.90 8 20 2.9 1.2e+02 3.3 0.0 8 22 796 810 791 810 0.88 9 20 2.9 1.2e+02 3.3 0.0 8 22 904 918 899 918 0.88 10 20 1.4e-05 0.00058 20.1 0.4 3 23 986 1007 984 1007 0.96 11 20 3.4e-05 0.0014 18.8 0.5 3 23 1015 1036 1013 1036 0.92 12 20 0.00027 0.011 16.0 0.2 1 23 1071 1094 1071 1094 0.95 13 20 0.005 0.21 12.0 0.1 1 23 1100 1123 1100 1123 0.94 14 20 0.08 3.4 8.2 0.1 8 23 1136 1152 1130 1152 0.91 15 20 4.8e-05 0.0021 18.4 0.2 1 23 1158 1181 1158 1181 0.94 16 20 0.0002 0.0084 16.4 0.2 1 23 1187 1210 1187 1210 0.94 17 20 7.3e-05 0.0031 17.8 0.5 1 23 1375 1398 1375 1398 0.98 18 20 9.2e-06 0.00039 20.6 1.4 1 23 1404 1427 1404 1427 0.95 19 20 9e-06 0.00038 20.7 3.4 1 23 1433 1456 1433 1456 0.94 20 20 0.014 0.58 10.7 4.8 1 23 1462 1485 1462 1485 0.98
Sequence Information
- Coding Sequence
- atggataaaattgaGGAGAAACTCGGGACAGATCTTTCGCAAGATATTTATCAGAAGGCATGTTCAATAAGCATGACAATAATATCAAGTCTAATGGAACCCCAAAATACGAAGCCcgaagatcgcaaagatttcgcttgcaacaagtgcgaggaGAAATTTGTGTTCCAAAGTCAGTTGAGTACGCATCAAATGGCCGTACACACAGACCGcaatgattttgcatgcgataagtgtgagCTGAAATTTGAACTCGAAATGAATTTGATCAGTCACCAAAAGGAAATACATGAAAGTCAAACCGCTTCTGCACCCAAAGAGAGCAATCCATCGGTGTTGAGTATCCGCCAAGAAATAGTCTGTGAAGCTCGCAAAGATTTTGactgtgacaagtgcgagagaaaatttaagGATCGTATTGATTTGAGCAGGCACATGAATTGGGTGCACAAGGGTCGCAATGATATCGTTTGCGACCAGTGTAATAAGGAATTTTCTTGTCGAGGAAGTTTGGTCAGACACCAAAGAATAACCCACGAACGTCGCTTGGACTtcgaatgcgacaagtgtgacaggaaatttggatataagaGGAGTTTGCTTCAACATCAAAAAAAAGCCCACGATTACGTAGGTGAAAACTCCGAGAGAACATTTGAAGATCGAAGCCGTCCGAtcaaacgcaaaaaaataagccaTGAAAATCGCCAAGATGACGTTCGTGAAAATGTCAAGGAGACGATTGTGGTTCTACCAGGTTTGATCACCCACCAAGAAACAATCCAAGTAGGCCCAAAAAATGACGTATGCAAAAATAATGAGAGTCAATTTGGACAAGAACAGCAACCGCTCATCCGCCAAGAGACGTTACAAGAAGATCCCAAAGATAGCATATGTGAAAAGGTCGGGGAGACATTTGAGGCTCGAAGCAATTTGATCATCCACCAAGAAACAGCCCAAGAAGGTCACGAAGTTGACGTATTGGACAATTGTGagaacaaaattgaaaaaccaCAGCAATCTCTCAcccaccaaaaaatagtacacgaagATGGCAAAGTTTACTTATGTAACTACGCCGGGGAGACATTTCCGGTTCAAAGCAGTTTGACCaatcaccaaaaaatagtacagGAAGATGGCAAAGATTTCCTCTGTGACAATTCCGAGGAAAAATTTGAGGCTCGAAGCAATTTGATCACCCACCAAGAAACAATCCAAGTAGGCCCGAAAAATGGCGTATGCGATAATAATGAGAGCAAATTTGGACAACAGCAATCGCTCACCCGCCAAGAGACGTTACAAGAAGATCCAAAAGATATCATATGTGAAAATGTCGAGGAAACATTTGAAGATCAAAGACATTTGATCAAACGCCAAAAAATAAGCCATGAAAACCGCCAAGATGACGTACGTGAAAATGTTAAGGCGACGATTGTGGTTCTACCCAGTTTGATCACCCACCAAGAAACAATCCAAGTAGGCCCAAAAAATGACGTATGCGACAATAGTGAAAGCAAATTTGGACAAGAACAGCAATCGCTCATCCACCAAGAAACAATCCAAGTAAGTCAAAAAAATGACGTATGCGATAAtaatgagagaaaatttgTACAAGAACAGCTATCGCTCACCCTCCACGAGACTTTACACGAAGGTCCCAAAGATAACATATGTGAAAATGTCGAAGAAACATTTGAAGATCAACGACATTTGATCAAACGCCAAAAAATAAGCCATGAAAACCGCCAAGATGACGTACGTGAAAATGTCAAGGAGACAATTGTGGTTCTACCCAGTTTTATCACCCACCAAGAAACAATCCaagtaactaaaaaaaatgacgtatGCGATAATAATGAGAGCAAATTTGGACAAGAACAGCAATCGCTCACCCGCCAAGAGACGTTACACGAAGGTCCCAAAGATAACATATGTGAAAATGTTGAGGAAACATTTGAAGATCAAAGACATTTGATCAAACGCCAAAAAATAAGCCATGAAAACCGACAAGATGACGTACGTGAAAATGTTAAGGCGACGATTGTGGTTCTACCCAGTTTGATCACCCACCAAGAAACAATCCAAGTAGTTCCGAAAAATGATGTATGCGATAATAATGAGAacaaatttgaacaaaaacaGCAATCGTTCACCCCCCACGAGACCTTACACGAAGGTCCCAAAGACAACATGTGTGTAAATGTCGGGGAGACATTTAAGGCTCGAAGTAATTTGATATTACACCAAGAAACAGCCCAAAAAGTTCACGAAGTTGACGTATTGGACAATTGCGagaacaaaattgaaataccACAGCAATCTCTCTcccaccaaaaaatagtacacgaagATGGCAAAGATTTCCTCTGTGACAATTCCGAGGAGAAATTTGAGGATCGAAGCAATTTGATCACCCACCAAGAAACAGCCGAGGAAGGTCCCAAAGATTACGCTCCCGATAATTGcgagaataaaattgaaaaaaaacaacaactgcTTACTCACCTAGAAACAGCCCAAGCAAGTCACGAAGATGACGTAATCGACAAAGGCGAAAAAAACCTTGAACAAACACAACAATTGATCATCCATCAAAAAATAGTACTCGAAGCTCCCAAACCCCCCGTTGAACAAACACAGCAATTGCTCACCcatcaaaaaatagtaaacGAAGATGGCAAAGATTTATCATGTGACAATTCCGAGGAGAAATTTGAGGATCGAAGCAATTTGATCACCCACCAAGAAACAGCCGaggaaggtcacaaagattacgctCCCGACATTTGCGAGatcaaaattgaacaaaacCAGCAACTGCTCATCCACCAAGAAACAGCCAAAGAAAGTCACGAAAATGACGTAATCgataattgcgaaaaaaaccTTGAACAAACACAACAATTGCTCATCCATCAAAAAATAGTACTCGAAGGTCCCAAACATTGCTTATGTGAAAATTGCGGGGAGGCATTTGAAGATCCAAGCAGTTTAACCAGACACCGAAgaatagtacacgaagGTTTGATGGATCACTTGTGTGAAAATTGCGGGCAGTCATTTGAGGATCAAGGCAACTTGACCAAACACCAAGAAGAAGCCCACGGAGATCACTTGGCTTCCGCATGCGACAGTTCCAGGGAGACATTTCAGAATCCAAGCAGTTTGAGTGGAGACCAAAAATCAGCCTACGAAGTtcgcaaaaattacttatgtgaaaattgCGGCGAGGCATTTGAAGATTTGAACAGTTTGAGCAAACACCAAAAAGTATCCCACGAACGTCGCagagattacttatgtgaaagtTGCGGGGATGCATTTGAAAATCCAAGCAGTTTGACAAGTCACCAAAACTTAGTACACGAAGGTGGAAATaattactcatgtgacaatTTCGAGGAGAAATTCAAAGATCGAAGcaatttgatcaaacaccaaGAAGTAACCCACGAAAATAGCAAATACTTtttatgtgacaattgcggaGAGTCATTTGAGGATCCGAGCAGTTTGAGCAAACACAAAGAAACAGCCCATGAAAGTAGCAGAGATTTTTTATGTGACGATTGCGGGGAGACATTTGAGGGTCAAAACAGTTTGACCAAACACAAAGAAACAGCCCACCAAGGTCATGCTCCCGACAATTTCGAGAacaaatttggacaaaatcaGCAATCGCTCCCTCACCAGGagacagtccatgaaaatCGCCAAGATAACTCTCGTGAATATGTTGGGGAGACCTTTGAGATTCTAAGCAGTCTGATCACGTACCAAGAAATAGCCCTAGAAGGTCGTAGAGATGACGTATccgacaattgcgagaaaaaaattgaacaaaaacaGCAATTGCAATCGCTCACCCAACAAGAGGCAGTCCAAGAAGATCGCCAAGATTACGAAAGCGACAAGGGTAGGCAGATATTTGAGATTCCAAGCAGTTTGACCAGCCACCAGGAAACAGCCGAAGAAGGTCACGAAGAAACATCTCAGGATTCGAGCAATTTTACCAGACAGcaaaaaatagtacacgaagATGGCAAAGATTATTTCTGTGACTATACCGGAGAGCAGTTGATCAAACGCCAAAAAATAACCCACGAAAGTAGCAACGATTACGAGTGTGATCAATGCAGGAAGAAATTTGGGAGTAACGCGTCTTTGCTCGTCCATCAAAAGACCGTCCACGAGGGTGTCAAAGAATATCTCTGCGACCAGTGCGACAAGGCCTTCTCACAAAAAGGTAATTTACActtgcacataaaaaaaatccacgaAGGTGACAAAGATcacgtatgcgacaagtgcggaaagaagtttaaacaaaaatcgcatttgctcttacaccagATGGCTGTGCACGAGGGTCGTAAAAGATACACCTGCGAAAGGTGTAAGAAGAAGTTCGGACGAAAATGGCGCTACATCAAGCACCACAATACAGTCCACGAACCTCGCCAAAATTCCAGCCGGAATAGAAAGTTCGAGTCGGAACTTGACGATCCAATAAGTTGGATCAATcaccaaaaaatagaaaaagaagatttcAAGTATGAAGAATGCAAGAGTACAGAACAATTTGGACTTCCATCCAATTTGAGCGGTTACCAAGATGAGGTCAAGATGATTCACGAGTATGAGCCATCGGACAGGTgttataattgtttaatttgcCGACACAATCGATTGTTATATCCTGAAACGAATGAAGGTGaagaaattgtaaaagttaAAACTGAACCACATTTTGAAACAAATGAAGGTGAAGAAAATGtaagaattaaaattgaacCAATTTGGTGA
- Protein Sequence
- MDKIEEKLGTDLSQDIYQKACSISMTIISSLMEPQNTKPEDRKDFACNKCEEKFVFQSQLSTHQMAVHTDRNDFACDKCELKFELEMNLISHQKEIHESQTASAPKESNPSVLSIRQEIVCEARKDFDCDKCERKFKDRIDLSRHMNWVHKGRNDIVCDQCNKEFSCRGSLVRHQRITHERRLDFECDKCDRKFGYKRSLLQHQKKAHDYVGENSERTFEDRSRPIKRKKISHENRQDDVRENVKETIVVLPGLITHQETIQVGPKNDVCKNNESQFGQEQQPLIRQETLQEDPKDSICEKVGETFEARSNLIIHQETAQEGHEVDVLDNCENKIEKPQQSLTHQKIVHEDGKVYLCNYAGETFPVQSSLTNHQKIVQEDGKDFLCDNSEEKFEARSNLITHQETIQVGPKNGVCDNNESKFGQQQSLTRQETLQEDPKDIICENVEETFEDQRHLIKRQKISHENRQDDVRENVKATIVVLPSLITHQETIQVGPKNDVCDNSESKFGQEQQSLIHQETIQVSQKNDVCDNNERKFVQEQLSLTLHETLHEGPKDNICENVEETFEDQRHLIKRQKISHENRQDDVRENVKETIVVLPSFITHQETIQVTKKNDVCDNNESKFGQEQQSLTRQETLHEGPKDNICENVEETFEDQRHLIKRQKISHENRQDDVRENVKATIVVLPSLITHQETIQVVPKNDVCDNNENKFEQKQQSFTPHETLHEGPKDNMCVNVGETFKARSNLILHQETAQKVHEVDVLDNCENKIEIPQQSLSHQKIVHEDGKDFLCDNSEEKFEDRSNLITHQETAEEGPKDYAPDNCENKIEKKQQLLTHLETAQASHEDDVIDKGEKNLEQTQQLIIHQKIVLEAPKPPVEQTQQLLTHQKIVNEDGKDLSCDNSEEKFEDRSNLITHQETAEEGHKDYAPDICEIKIEQNQQLLIHQETAKESHENDVIDNCEKNLEQTQQLLIHQKIVLEGPKHCLCENCGEAFEDPSSLTRHRRIVHEGLMDHLCENCGQSFEDQGNLTKHQEEAHGDHLASACDSSRETFQNPSSLSGDQKSAYEVRKNYLCENCGEAFEDLNSLSKHQKVSHERRRDYLCESCGDAFENPSSLTSHQNLVHEGGNNYSCDNFEEKFKDRSNLIKHQEVTHENSKYFLCDNCGESFEDPSSLSKHKETAHESSRDFLCDDCGETFEGQNSLTKHKETAHQGHAPDNFENKFGQNQQSLPHQETVHENRQDNSREYVGETFEILSSLITYQEIALEGRRDDVSDNCEKKIEQKQQLQSLTQQEAVQEDRQDYESDKGRQIFEIPSSLTSHQETAEEGHEETSQDSSNFTRQQKIVHEDGKDYFCDYTGEQLIKRQKITHESSNDYECDQCRKKFGSNASLLVHQKTVHEGVKEYLCDQCDKAFSQKGNLHLHIKKIHEGDKDHVCDKCGKKFKQKSHLLLHQMAVHEGRKRYTCERCKKKFGRKWRYIKHHNTVHEPRQNSSRNRKFESELDDPISWINHQKIEKEDFKYEECKSTEQFGLPSNLSGYQDEVKMIHEYEPSDRCYNCLICRHNRLLYPETNEGEEIVKVKTEPHFETNEGEENVRIKIEPIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -