Tbra014185.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
ZFY
Assembly
GCA_902806795.1
Location
CADCXV010001460.1:1293816-1297464[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.89 38 4.9 1.9 1 19 63 81 63 87 0.90
2 20 0.001 0.043 14.2 0.4 1 21 96 116 96 117 0.93
3 20 0.013 0.57 10.7 4.7 1 21 126 146 126 148 0.94
4 20 0.0027 0.11 12.9 7.5 2 23 154 175 153 175 0.96
5 20 0.0015 0.064 13.7 0.3 2 23 181 202 180 202 0.96
6 20 9.6e-06 0.00041 20.6 0.2 1 23 220 242 220 242 0.98
7 20 0.0013 0.054 13.9 1.1 1 23 248 271 248 271 0.97
8 20 0.00023 0.0096 16.2 0.5 2 23 283 304 282 304 0.96
9 20 5.8e-06 0.00025 21.2 2.9 1 23 310 332 310 332 0.96
10 20 4e-07 1.7e-05 24.9 0.2 1 23 338 360 338 360 0.98
11 20 3.9e-05 0.0016 18.7 0.2 3 23 368 388 366 388 0.97
12 20 0.56 24 5.6 0.5 1 17 394 410 394 411 0.85
13 20 0.0015 0.065 13.6 0.3 2 23 505 527 504 527 0.95
14 20 0.0056 0.24 11.9 3.4 1 23 531 553 531 553 0.99
15 20 0.011 0.45 11.0 2.3 1 23 559 582 559 582 0.92
16 20 0.00067 0.028 14.8 0.4 3 23 591 612 589 612 0.96
17 20 4.5e-05 0.0019 18.5 3.3 1 23 649 671 649 671 0.99
18 20 6.7e-06 0.00029 21.1 0.1 1 23 675 697 675 697 0.98
19 20 4e-05 0.0017 18.6 2.6 2 23 702 723 701 723 0.97
20 20 1.6e-05 0.00069 19.9 1.4 1 23 729 752 729 752 0.98

Sequence Information

Coding Sequence
ATGCAGAGAATCGAGAAGACTCAAATTCCACCTACTGCGGAAatagaacaaaaatttttacccgAAAAACACCACAAAATCGTTGACGAATTATCCGTGGTTATCGATCGATTGGATAGTCAGGACATTAAACCGCATCGCGAACGACTTCGACGCGGCAAAAACGTCCGTAGAGAGACTGCGTCGTACTCCTGCTTACCCTGTTCTAAGAGCTTCAAAAGTCTCTCGGGCTTCGAGCTTCATTGCGAGACAACGGCGCACCAGAGAAAAACTGCCAAAAAGCGTTACGACTGCGCTTActgtaaaaaaagattttcaaacTCCAAAGCCATCATCAAGCATCTTGAAAAATGCATGGTACGCCTTGACAAAAAGTTcccttgcgacaagtgcaacaAAGTTTTCTCGGCTTATCAAAATCTCTACAAGCACAAAAAGTGCCACTTGAAGCCCGATCTAAACTGCAAGCACTGCTCGCAAAAATTTCGCCGCAAATGCGACCTGGTCCGCCACGAGAAGACTCACTTTTTGACGCCGCTGCCTTGCAGCGAGTGCGACTACGAGACGACCGATCCGCGCCACTTGACGCTGCACGAGGCGACGCACAAAAAGTCCGagagcggcggcagcagcggcgattCGCAGAAGCCGTCCGTCTTCGTCTGCGAAGAGTGCGGCAAACCGTTTCAAAAGGCCACGGATCTGCAGCAGCACTACAACATCCACACGGGTGACAAGCCCTACGTCTGCGAGTACTGCCAGAAGGCCTTCTTTCTGCGCCGACAGATGACCTCGCACGTGCGCCAGGTGCATCCGGAGAAGAAGCTGCCCAAGGATCACAGCACGACCTGCGACTTTTGCGGCAAAGTCCTGGCCTCGAAGCGATCGCTCATCCGTCATCGTGCCAGTCACAATCCGACCAAGCTCTACCTCTGCGACTTTTGCGGCAAGAGCCTCAGCAACTCGGACCACCTGAAGAAGCATCGCAGGATCCACACGGGCGAGAAGCCCTACGTCTGCGATATCTGCGGCAAGGGCTTCACTGACTCGGAGAACATGCGCATGCATCGGCGCATTCACACGGGCGAAAAGCCCTACGGCTGCGATCTGTGCCCGAAAGCCTTCAGCCAAAGATCGACCCTCATCATTCACAAGAGGGGCCACACGGGCGAGCGACCCTACGTCTGCCAGCTGTGCAACAAGGGCTTCGTTTGTCAGGGAAATTTGACTGCGCCGCTGATACTGCTCATCCAGAACGGCAGTGGCGACTCTTTTAGCAacggagtagcagcagcagcagcagcagtgtccAACGGCATCAATGGCAACGGCAACAGTAATGGCAACAGTAACGGCAAACACGACTACCTCGTCGATTACGACGATCTCGTTAAGCCAACGAGCAACGACGATCGGTCACCGACGACGGTCGCTATCAAGCCGCCGAAGCGTCAGCGTCGACGTCCCGGCTGGTTTCAGAACAGCATCGTCGAGTTCGACTCGATCTGCCTGTCGTGCCCGATCTGCCACAAGTCCTACGAGACCGAGCGCAAGGTGGCCGCGCACGTGCGCAACGTCCATCGCAAGCCCTTCAAGTGCGACCTCTGCCGACGCCAGTACTTCACCCAGGAGAAGCTGAGCGAGCACCGCAAGACCCACAACACGGACTCGCACTTCGAGTGCCGCATCTGCCATCTCAAGTACAAGCGCGAGGAGACGCTGCAGTCGCACTTCGTGCGCGTGCACAGCGACTGCGAGGCCATATTCGGCTGCGACTACTGCGGCAAGCGCTACAAGCTCAAGCAGGACTTGCTGCTGCACATCAACCAGGTGCACATGTGCACGCCCCAGATCTGCCGCTTCTGCGGCAAGGAGGTGAAGAACGTCAAGGCCCACGAGTGGCACCACCAGAACAAGATGAAAGCGGACAGCAACGCCGAGATCTACAAGTGTCGCATGTGCTACAAGCGCTTTCGCAGCGAGTCCAAGCTCGAGAATCACCTGATGCGCCACGTGCAGTGCTACACCTGCAACATATGCGGCCTCAAGTTCACCGGGCCCGGCCAGCTGATCAATCATCGCGCGACCCACAAGCCCGCGACCAAGTGCAAGTTCTGCGACAAGAACTTCACCTCGCAGAGCAACTATTATCAGCACGTGCTGATGCACGCCAAGGTCAGGCCCTACAAGTGCGACATGTGCCGCGAGGACTTTACCCAGCGCTCGACCCTCGTGCGCCACTGGAAGACCAGCCATCCGGGCAGGCCCACCGACAATCTGCCGCAGGTCCCCATCGCCGAACTCGCCAGACAGGTTCTCAAGAGTTTCGAGAAACCAGTACAGATTTAA
Protein Sequence
MQRIEKTQIPPTAEIEQKFLPEKHHKIVDELSVVIDRLDSQDIKPHRERLRRGKNVRRETASYSCLPCSKSFKSLSGFELHCETTAHQRKTAKKRYDCAYCKKRFSNSKAIIKHLEKCMVRLDKKFPCDKCNKVFSAYQNLYKHKKCHLKPDLNCKHCSQKFRRKCDLVRHEKTHFLTPLPCSECDYETTDPRHLTLHEATHKKSESGGSSGDSQKPSVFVCEECGKPFQKATDLQQHYNIHTGDKPYVCEYCQKAFFLRRQMTSHVRQVHPEKKLPKDHSTTCDFCGKVLASKRSLIRHRASHNPTKLYLCDFCGKSLSNSDHLKKHRRIHTGEKPYVCDICGKGFTDSENMRMHRRIHTGEKPYGCDLCPKAFSQRSTLIIHKRGHTGERPYVCQLCNKGFVCQGNLTAPLILLIQNGSGDSFSNGVAAAAAAVSNGINGNGNSNGNSNGKHDYLVDYDDLVKPTSNDDRSPTTVAIKPPKRQRRRPGWFQNSIVEFDSICLSCPICHKSYETERKVAAHVRNVHRKPFKCDLCRRQYFTQEKLSEHRKTHNTDSHFECRICHLKYKREETLQSHFVRVHSDCEAIFGCDYCGKRYKLKQDLLLHINQVHMCTPQICRFCGKEVKNVKAHEWHHQNKMKADSNAEIYKCRMCYKRFRSESKLENHLMRHVQCYTCNICGLKFTGPGQLINHRATHKPATKCKFCDKNFTSQSNYYQHVLMHAKVRPYKCDMCREDFTQRSTLVRHWKTSHPGRPTDNLPQVPIAELARQVLKSFEKPVQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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