Tbra012545.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- pol
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000929.1:32149-54822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00053 0.023 15.1 1.8 5 23 572 591 570 591 0.95 2 19 5.8e-05 0.0025 18.1 1.5 1 23 597 620 597 620 0.97 3 19 5.4 2.3e+02 2.5 4.0 1 23 626 649 626 649 0.96 4 19 0.0012 0.05 14.0 2.6 1 23 655 678 655 678 0.97 5 19 1.8e-05 0.00075 19.7 2.2 1 23 684 707 684 707 0.95 6 19 1.4e-05 0.00061 20.0 2.5 1 23 713 736 713 736 0.97 7 19 0.0023 0.099 13.1 0.2 1 23 742 765 742 765 0.94 8 19 8.7e-05 0.0037 17.6 0.5 3 23 773 794 772 794 0.96 9 19 0.00053 0.023 15.1 3.1 1 23 800 823 800 823 0.97 10 19 0.0046 0.2 12.1 0.1 3 23 831 852 829 852 0.95 11 19 3.3e-05 0.0014 18.9 0.4 1 23 858 881 858 881 0.97 12 19 0.00034 0.014 15.7 0.9 1 23 888 911 888 911 0.96 13 19 0.00014 0.006 16.9 0.6 1 23 917 940 917 940 0.97 14 19 0.00018 0.0077 16.6 0.5 1 23 946 969 946 969 0.96 15 19 0.00034 0.015 15.7 0.5 1 23 975 998 975 998 0.97 16 19 1e-05 0.00044 20.5 0.6 1 23 1004 1027 1004 1027 0.98 17 19 0.00092 0.039 14.3 0.9 1 23 1033 1056 1033 1056 0.96 18 19 2.9e-05 0.0012 19.1 2.5 1 23 1062 1085 1062 1085 0.98 19 19 5.9e-05 0.0025 18.1 0.4 1 23 1091 1114 1091 1114 0.97
Sequence Information
- Coding Sequence
- ATGAAAGTCCATATTATCTGTCGAAAAACacgaaagcagcacaagatcgaCTTGACCGCTGGCCTCGAGGATGATTTTGTCAGCCCCCGGGTCGTCCCTCAGTACCGTTGCAACAACAACACTAACATATTGCAGAGGTCCTACAGTACCACTACAATATCGTATACACTCAATCTATTGCAAAGGTCCCTCAGTACTTCTGCAATAGAACTTACATCTAAATTGTCGCAAAGGTCCCTCAGTACCATTGCAACAACAATACTAATACATTGTAGAGGTCCTACAGTACCACTACAATATTTGCCTAGCATAAATAACTGGGTCAGATCGGCTAGAATATACGCCGAAAAATTCTCgcaatttgaaaagaacagcAAACACAAGGGATATAAAGCTCGGAAATTGCAAGTAAAAACCAGATTTAAAGCCAACGAATATTTAGCAGAAAGAACAttctgtaaaattaaaaaactaattagAAAAGACAAACACGCGGGCTTTTATCGTCGCTTTATTCAAAACTTCGGAAAGATCGCGAAGCCTATGACTCAACTcctcaaaaaagaagaagattttATTTGGAATCCAGAATGTGACGAAGCTTTCAAAACCTTAAAACAAATCCTTTGCGAAGCACCATTACTAACCTACCCTGACTTTAGTAAACCTTTTGTTATAACCACCGACGCATCCGGTTATGCTGTCGGAGGTATTTTATCACAGGGTGACACCGGTAAAGAAAAGCCGATAGCATACACTTCACGAGTATTGCGGGGCCCAGAATTAAATTACGATACTTATGAGAAAGAGGCCCTCGCAATGATCCACGCCGTAGACAATTTCAGACCTTATGTATCAGGCACAATTTGTGACTTTGGATCAGAATCATGCGTTGATGCCGACGGAGGTAACAGTTTTTGGAAAACTCTCCCTGAAGACATCTGTCAATTTAACCGCTATAACATCTTATACGAGGGacaatcagaaaaaattatggatccagaagaagaagattcCAGCAACATCTATACAGTAACATCCAGAGATATAACTTTTGGCCTCACAGCAAAGAAGACCGAATCAATCTGTgggtataaaataataaaaaccgAACATCCCAAACTTTACATATTTGAGACAACAAAATCCAACTCATTCGCTTCCCGAGGAAAAGCTGATGCTTCAAACCTCGATCTATTCTCATACATGAATTCCAAATTTGTCTACGTCGAAAAACATATGAAATATCAGATTAAACACCTCTATCGGGATATCTTAACAGAGAGATGTCGCTTGGAAAGACAAACACTAATGAATTCCTTGGCAATTGCGTCGGGCAGCCCGGATCAGTTTGCCTACAATTTCATGAAGGGCCCAGGATATATGGCCCTTCCTGCTGGTGAGGTAATACACATTATTAAATGTTTACCCGTCGAAGTAAAATTACAACATGGCGAGAATTGCTACGCCGAGTTACAAGTAGCAAGAGTTGCAAAGGTCCCTCAGTACCGTTGCAACAACAACACTAACATATTGCAGAGGTCCTACAGTACCACTACAATATCGTATACACTCAATCTATTGCAAAGGTCCCTCAGTACTTCTGCAATAGAACTTACATCTAAATTGTCGCAAAGGTCCCTCAGTACCATTGCAACAACAATACTAATACATTGTAGAGGTCCTACAGTACCACTACAATATTtgcacgacaagtgtgaaaagaattTTGGgcgaaaatcgaaattgataagacaccaaaggacaatacacgaaggtcgcaaagactacgcatgcgacaagtgtgagaagaaatttggacaaaaaccgcATTTGCTCAATCATCtgaagacagtccacgaaggtcgaaaagattttgcatgcgatcaATGCGCGACGAAATTCGGATGTAAACGGAATTTGCTTCTCCATCAcaaaacagtacatgaaggtcgtaaagattatgcctgccacaagtgcgaaaagaaatttgggcgaAAGCAGCCTTTGCTCAGACACTTCatgacagtccacgaaggtcgcaaagattacgcatgcgataactgcgataaaaattttggacATCGATCTAATTTGATTAAACATCAAAAATTTgtccacgaaggttgcaaagactacgcatgcgacaagtgtgagaagaaatttagacaAAAACCGCATTTGCTCAATCATCtgaagacagtccacgaaggtcgaaatgattacgcatgcgacgtttgtgaaaaaaaatttgtaattctAAGCACTTTAAGCAGACACAAAAAagcaatccacgaaggtcgcaaaaataACGCATGCGACGCGTGTGgaaaacaatttaatgaaaagtcaaaattaatcaggcaccaaaaaacagtccatgagggtcgcaaagattacgcatgcgacaattgcgagaaaaaatttggactcaaACACCATTTGCTTattcaccaaaggacagtacacgagggccgcaaagattacggatgcAACATGTGCGAGAAGAAGTATGGGGATCCAGGCAACTTGGTCcaacacaaaaaattagtccatgagggtcgcaaagattacgcatgcgaaaattgcgagaagaaatttggacaaaaaccgcAATTGAtaagacaccaaaagataatGCATGAAGGTCAGCCCAAAGATTTTACTTGCggcaattgcgagaagaaatttggactcaaAACAGATTTGTTTCGACACCAAAGAGCAGTACACGAAGgacggaaagatttcgcatgcgacattTGCAAGAAAGAATTTGGATCTAAACAGTATCTGCTTTTGCACCagaagacagtacatgaaggtcgtaaagatttcgcatgtgacaaatgcgagaaaaaatacggAACAAAACAGAATTTGCTTgttcaccaaaaaatagttcacgaaggtcgcaaagatttcgcatgcgacaagtgcgcgaagagatttggaaataaacagagtttgctcttgcacataaaaacagtacacgataATCGAAAAGACTATGTATGCGacgtttgtgaaaaaaaatttggagaaaaatcaaaattaatcagacaccaaaagacaattcacgaaggtcgaaaagattttaaatgCGATAAGTGCCAGATGAAATTTGGGGATCAATACAAGTTGAGAGGGCACCAAAATGCAGCCCacgagggtcgtaaagattacccatgtaacaattgcgagaagagaTTTAGACTTAAACAGCATTTGCTtgtccaccaaaggacagtacatgagggtcgcaaagattacgcatgcaaaaattgcgaagaaaaatttgtggATCCTAGATCTTTGATTaggcacaaaaaaacagtccatgaaggtaaggtcgcaaagattatgcatgcgacaatcgcgagaaaaaatgatgattga
- Protein Sequence
- MKVHIICRKTRKQHKIDLTAGLEDDFVSPRVVPQYRCNNNTNILQRSYSTTTISYTLNLLQRSLSTSAIELTSKLSQRSLSTIATTILIHCRGPTVPLQYLPSINNWVRSARIYAEKFSQFEKNSKHKGYKARKLQVKTRFKANEYLAERTFCKIKKLIRKDKHAGFYRRFIQNFGKIAKPMTQLLKKEEDFIWNPECDEAFKTLKQILCEAPLLTYPDFSKPFVITTDASGYAVGGILSQGDTGKEKPIAYTSRVLRGPELNYDTYEKEALAMIHAVDNFRPYVSGTICDFGSESCVDADGGNSFWKTLPEDICQFNRYNILYEGQSEKIMDPEEEDSSNIYTVTSRDITFGLTAKKTESICGYKIIKTEHPKLYIFETTKSNSFASRGKADASNLDLFSYMNSKFVYVEKHMKYQIKHLYRDILTERCRLERQTLMNSLAIASGSPDQFAYNFMKGPGYMALPAGEVIHIIKCLPVEVKLQHGENCYAELQVARVAKVPQYRCNNNTNILQRSYSTTTISYTLNLLQRSLSTSAIELTSKLSQRSLSTIATTILIHCRGPTVPLQYLHDKCEKNFGRKSKLIRHQRTIHEGRKDYACDKCEKKFGQKPHLLNHLKTVHEGRKDFACDQCATKFGCKRNLLLHHKTVHEGRKDYACHKCEKKFGRKQPLLRHFMTVHEGRKDYACDNCDKNFGHRSNLIKHQKFVHEGCKDYACDKCEKKFRQKPHLLNHLKTVHEGRNDYACDVCEKKFVILSTLSRHKKAIHEGRKNNACDACGKQFNEKSKLIRHQKTVHEGRKDYACDNCEKKFGLKHHLLIHQRTVHEGRKDYGCNMCEKKYGDPGNLVQHKKLVHEGRKDYACENCEKKFGQKPQLIRHQKIMHEGQPKDFTCGNCEKKFGLKTDLFRHQRAVHEGRKDFACDICKKEFGSKQYLLLHQKTVHEGRKDFACDKCEKKYGTKQNLLVHQKIVHEGRKDFACDKCAKRFGNKQSLLLHIKTVHDNRKDYVCDVCEKKFGEKSKLIRHQKTIHEGRKDFKCDKCQMKFGDQYKLRGHQNAAHEGRKDYPCNNCEKRFRLKQHLLVHQRTVHEGRKDYACKNCEEKFVDPRSLIRHKKTVHEGKVAKIMHATIARKNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -