Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010000880.1:48494-63979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.089 3.8 8.1 0.0 5 23 83 102 82 102 0.92

2 15 1.9e-06 8.3e-05 22.8 0.9 1 23 108 131 108 131 0.97

3 15 6.4e-06 0.00027 21.1 0.7 1 23 137 160 137 160 0.97

4 15 3.9e-06 0.00017 21.8 2.4 1 23 166 189 166 189 0.97

5 15 1.3e-06 5.3e-05 23.3 0.9 1 23 195 218 195 218 0.97

6 15 7.8e-07 3.3e-05 24.0 1.3 1 23 224 247 224 247 0.98

7 15 0.00068 0.029 14.7 3.9 1 23 253 276 253 276 0.97

8 15 4.7e-07 2e-05 24.7 1.0 1 23 282 305 282 305 0.97

9 15 0.00011 0.0049 17.2 2.3 1 23 311 334 311 334 0.97

10 15 0.056 2.4 8.7 0.3 5 23 344 363 343 363 0.96

11 15 5.3e-06 0.00023 21.4 1.0 1 23 369 391 369 391 0.98

12 15 0.0098 0.42 11.1 0.5 5 22 405 422 404 422 0.94

13 15 3.5e-05 0.0015 18.8 1.8 1 23 433 456 433 456 0.97

14 15 1.7e-06 7.4e-05 22.9 1.1 1 23 462 484 462 484 0.99

15 15 2.4e-06 0.0001 22.5 0.4 1 23 494 517 494 517 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.089	3.8	8.1	0.0	5	23	83	102	82	102	0.92
2	15	1.9e-06	8.3e-05	22.8	0.9	1	23	108	131	108	131	0.97
3	15	6.4e-06	0.00027	21.1	0.7	1	23	137	160	137	160	0.97
4	15	3.9e-06	0.00017	21.8	2.4	1	23	166	189	166	189	0.97
5	15	1.3e-06	5.3e-05	23.3	0.9	1	23	195	218	195	218	0.97
6	15	7.8e-07	3.3e-05	24.0	1.3	1	23	224	247	224	247	0.98
7	15	0.00068	0.029	14.7	3.9	1	23	253	276	253	276	0.97
8	15	4.7e-07	2e-05	24.7	1.0	1	23	282	305	282	305	0.97
9	15	0.00011	0.0049	17.2	2.3	1	23	311	334	311	334	0.97
10	15	0.056	2.4	8.7	0.3	5	23	344	363	343	363	0.96
11	15	5.3e-06	0.00023	21.4	1.0	1	23	369	391	369	391	0.98
12	15	0.0098	0.42	11.1	0.5	5	22	405	422	404	422	0.94
13	15	3.5e-05	0.0015	18.8	1.8	1	23	433	456	433	456	0.97
14	15	1.7e-06	7.4e-05	22.9	1.1	1	23	462	484	462	484	0.99
15	15	2.4e-06	0.0001	22.5	0.4	1	23	494	517	494	517	0.96

Sequence Information

Coding Sequence: ATGCTTCTTTGTTCACACTGCGGCGTCGTGAGTCGTGACGAGTATACTGAGCTGAACGACACACGGCGAGGCACTGCGGCAACTGGCATGTGGCGATGCAGAGCCGTTCGATTGTCGAATCTCGAGACGAGTaTCTTTTACCTCATTGTACGGACGTTTGCTCATCAACAAAACGATCAAAActgctctttttttaaatGCACCGACATGGTTATTAGTaaggaaaaattcaaagtagtttctgatatttgtcaggagccATTTACACAGGAAGGAAGCATGATAAGACATCGAAATGCAgttcacaatgaacaaaaaaattacgcgtgcgacaagtgtgacaagaaatttgagttccgaagtaatttgagtagacaccttATAACAGTGCATGAAGGACGCAAAGATTTTGCCTGCGatcaatgcgagaaaaaatatgcacaaaaatcggatttgtttttgcaccaaagaacagtacacgaaggtcggaaagattttgcatgccacgagtgtgagaagaaatttggatataaatcagatttattgaggcaccaaaagacaatccacgatggtcgcaaagattacgcatgcgacaagtgtgagaagaaatttacacaaaaagcgAATctgcttttacaccaaaaaacagtacacgaaggtcgcaaggatttcgaatgcgacaaatgcgagaaaaaatttacacaaaaagcgAATctgcttttacaccaaaaaacagtacacgaagatcgcaaagattacgcatgtgacaagtgtgaaaagaaatttacacaaaaacagagtttgctcTGCCATCAAAGAACAGttcacgatggtcgcaaagattacgcatgtggtaagtgtgagaagaaatttggagatcaAAGCAATTTaagaaaacatcaaaaaacagtccacgagagtcgaaaagattacccatgtgacaagtgcgaaaagaaattcggacaaaaaccACATTTGCTCTACCATCAAAAGAAAGTTCACGatggccgcaaagattttgcattctacaaatgcgagaagcaatttggactaaaatcgtatttgcttttacaccaaaaaacagtgcACGAAGATCacaaagattttacatgcgacaactgcgaaaaaaaattcggacgcAAATCAAGCTTGATCTTACACTTGAAGATTCACGAAACTGTAAATGAAAGTGGCGACGATTACGCAAtcgacaagtgcgagcagaaatttgttcattcgaaaaatttgatcaaccaccaaaagacaagATCTATCAAAAGAAATGATAGCGTAGTTTTTGCATGCCACAATTGCGACCAGAAATTTGTActgaaaatgaatttgattAGACATCTAAAGACAGTGCACGAAGATCACGAAGATTATCAGTGCGagaaatgcgaaaagaaattcggacgcAAATCTAGCTTAATTTTGCACCTGAAGATACACGAAACTGTCAaggaaggtcacaaagattattcatgtgacaagtgcgagcagaTATTCAGGACTCAAAGCGATTTGATGAGGCACCAAGAAATAGTCCACGAATGCCGCAGAGATGACataagtttaaaaaattttgaatcccACCTacatggtgcattatttcaaaagtgtgatatttggagtggGCTGTGTAGGATCAGCTCCAAGAATGTTCATAGCAACATCATCCAAATCAATCACGACAGGATCCTCTGCAGTCGAACAGCCGTTTTTCGAATCCACAGTCGACTTGAGTGCTTGAACACCACCATCTAG
Protein Sequence: MLLCSHCGVVSRDEYTELNDTRRGTAATGMWRCRAVRLSNLETSIFYLIVRTFAHQQNDQNCSFFKCTDMVISKEKFKVVSDICQEPFTQEGSMIRHRNAVHNEQKNYACDKCDKKFEFRSNLSRHLITVHEGRKDFACDQCEKKYAQKSDLFLHQRTVHEGRKDFACHECEKKFGYKSDLLRHQKTIHDGRKDYACDKCEKKFTQKANLLLHQKTVHEGRKDFECDKCEKKFTQKANLLLHQKTVHEDRKDYACDKCEKKFTQKQSLLCHQRTVHDGRKDYACGKCEKKFGDQSNLRKHQKTVHESRKDYPCDKCEKKFGQKPHLLYHQKKVHDGRKDFAFYKCEKQFGLKSYLLLHQKTVHEDHKDFTCDNCEKKFGRKSSLILHLKIHETVNESGDDYAIDKCEQKFVHSKNLINHQKTRSIKRNDSVVFACHNCDQKFVLKMNLIRHLKTVHEDHEDYQCEKCEKKFGRKSSLILHLKIHETVKEGHKDYSCDKCEQIFRTQSDLMRHQEIVHECRRDDISLKNFESHLHGALFQKCDIWSGLCRISSKNVHSNIIQINHDRILCSRTAVFRIHSRLECLNTTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -