Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010001215.1:109327-116832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.1e-07 2.6e-05 24.3 1.8 1 23 14 37 14 37 0.98

2 14 2.6e-06 0.00011 22.3 0.7 1 23 43 66 43 66 0.97

3 14 1.7e-05 0.00072 19.8 0.7 1 23 72 95 72 95 0.97

4 14 1.2e-06 5.1e-05 23.4 1.2 1 23 101 124 101 124 0.98

5 14 8.9e-05 0.0038 17.5 2.6 1 23 130 153 130 153 0.95

6 14 1.7e-05 0.00071 19.8 0.1 2 23 302 324 301 324 0.93

7 14 3.6e-07 1.5e-05 25.1 3.3 1 23 330 353 330 353 0.98

8 14 7.9e-06 0.00034 20.8 1.6 1 23 359 382 359 382 0.96

9 14 1.5e-06 6.4e-05 23.1 2.8 1 23 388 411 388 411 0.96

10 14 4.9e-06 0.00021 21.5 0.5 1 23 417 440 417 440 0.97

11 14 1.8e-05 0.00078 19.7 1.3 1 23 446 469 446 469 0.96

12 14 7.8e-07 3.3e-05 24.0 1.6 1 23 475 498 475 498 0.96

13 14 3.8e-06 0.00016 21.8 2.4 1 23 504 527 504 527 0.95

14 14 0.035 1.5 9.4 2.0 1 17 533 549 533 550 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.1e-07	2.6e-05	24.3	1.8	1	23	14	37	14	37	0.98
2	14	2.6e-06	0.00011	22.3	0.7	1	23	43	66	43	66	0.97
3	14	1.7e-05	0.00072	19.8	0.7	1	23	72	95	72	95	0.97
4	14	1.2e-06	5.1e-05	23.4	1.2	1	23	101	124	101	124	0.98
5	14	8.9e-05	0.0038	17.5	2.6	1	23	130	153	130	153	0.95
6	14	1.7e-05	0.00071	19.8	0.1	2	23	302	324	301	324	0.93
7	14	3.6e-07	1.5e-05	25.1	3.3	1	23	330	353	330	353	0.98
8	14	7.9e-06	0.00034	20.8	1.6	1	23	359	382	359	382	0.96
9	14	1.5e-06	6.4e-05	23.1	2.8	1	23	388	411	388	411	0.96
10	14	4.9e-06	0.00021	21.5	0.5	1	23	417	440	417	440	0.97
11	14	1.8e-05	0.00078	19.7	1.3	1	23	446	469	446	469	0.96
12	14	7.8e-07	3.3e-05	24.0	1.6	1	23	475	498	475	498	0.96
13	14	3.8e-06	0.00016	21.8	2.4	1	23	504	527	504	527	0.95
14	14	0.035	1.5	9.4	2.0	1	17	533	549	533	550	0.89

Sequence Information

Coding Sequence: atgaatcacaaaaaaatattacacaaaGTTTTCAGAGATTACTCGTGTGAAAAgtgtgagagaaaatttggaagtaaatcaaatttgttaaagcatcaaaggacagtccatgaaggtcgcagagattacgcttgtgataaatgcgagaagacattcggacaaaaagtgactttgatcaggcaccaaaagacagtacacgacggTTCGAAATATTACGCTTGTGATAAATGTGAGAAGACATTCggacaaaaagtgactttGATCACGCACCAAAAGAGaatacacgagggtcgcaaagattacgaatgcgacatgtgtaagaagaaatttggaagtaaatcagatttgttcaGGCACCAAATCACAGTTCACGATGGTCACCAAAATTACGCATGtcacaagtgtgaaaagaaatttagacAAAAACCGAGTTTGCTCTATCACCAAAAGGCAGTACACGACGTATGCAAAAAATTacgcttgcgacaagtgcgaaaaCATTGCCTAAAGGAAATGGATTTCGAGTACGgtcgtgattttgaaaaaaatagaaaaaaagcttgTCTACGGTTGCATGAAGCCTTGAAAGAAGTTATTCGAAAACATTATCAATGTATCCATATTAAAGAGGAGCCTCATGACAGTTGGGAAGATGTAGCCAACGACAGTGTCGATCCCGAGTTCACAGTGAAAATCGAAAACTCCGAAGAATCATCGCCGAATGAATCATCGgaaaaTTCCACCAATGACTCGTGTGTCGATCCTGAGGTCTCAGTCAAAACCGAAAACTCTGATGAATCATCGACGAATGAATCATTGgaaaaTTCATCCAATGACTCGTGTGTCGATCCTGAGGTCTCAGTCAAAACCGAAAACTCTGATGAATCATCGACGAATGAATCATCGtgtgatatttgtcaaaaatcatttggacaaaatggTGCTCTCAAAAGGCACATACTGGCGGTACACAATCTGAGCAAACCTttcaaatgtgatatttgtcacaaatcatttggacgaaataGTCACCTCACAGATCACATAAAGGTAGTACATCTTCAGAGGaaatcctttgaatgtgatatttgtcacaaatcatttggacgaaaaaatgATCTTGCATCTCACATCCATGTAGTACACATGGGaagcaaacctttcgagtgtgaggtttgtcacaaatcatttggacgaaaaagtGATCTCCACAGGCACATAAATTTAGTACATAAacagagcaaacccttcgagtgtgaggtttgtcacaaatcatttggacaaaaaaatgatcttGCATCTCACGTCCGTGTAGTACACATGGGaagcaaacctttcgagtgtgaggtttgtcacaaatcatttggacaaaaaaatgatcttGCATCTCACATCCATGTAGTACACATGGGaagcaaacctttcgagtgtgataattgtcacaaatcatttggagacaGAAGTAACCTCAAGCAGCACATCAATTTAGTACATAAACAGaccaaacccttcgagtgtacAATATGTCATAAATCGTTTGGTCGAAAACCACACCTTGAACGTCACGTAAAAGCAGTACATCTTAGAAGCagaccctttgaatgtgagacttgtcacaagtcatttaGCGGCAAGAAGTATttcgaaaatcaaattaatgcagtacataaGGAAAGCAAACCTTAG
Protein Sequence: MNHKKILHKVFRDYSCEKCERKFGSKSNLLKHQRTVHEGRRDYACDKCEKTFGQKVTLIRHQKTVHDGSKYYACDKCEKTFGQKVTLITHQKRIHEGRKDYECDMCKKKFGSKSDLFRHQITVHDGHQNYACHKCEKKFRQKPSLLYHQKAVHDVCKKLRLRQVRKHCLKEMDFEYGRDFEKNRKKACLRLHEALKEVIRKHYQCIHIKEEPHDSWEDVANDSVDPEFTVKIENSEESSPNESSENSTNDSCVDPEVSVKTENSDESSTNESLENSSNDSCVDPEVSVKTENSDESSTNESSCDICQKSFGQNGALKRHILAVHNLSKPFKCDICHKSFGRNSHLTDHIKVVHLQRKSFECDICHKSFGRKNDLASHIHVVHMGSKPFECEVCHKSFGRKSDLHRHINLVHKQSKPFECEVCHKSFGQKNDLASHVRVVHMGSKPFECEVCHKSFGQKNDLASHIHVVHMGSKPFECDNCHKSFGDRSNLKQHINLVHKQTKPFECTICHKSFGRKPHLERHVKAVHLRSRPFECETCHKSFSGKKYFENQINAVHKESKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -