Tbra014634.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000847.1:1310999-1346476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.25 11 6.7 0.1 6 23 2 20 1 20 0.92 2 17 2.3e-05 0.00099 19.4 1.6 1 23 26 49 26 49 0.97 3 17 0.00013 0.0057 17.0 1.3 1 23 55 78 55 78 0.97 4 17 0.0075 0.32 11.5 2.9 1 22 84 105 84 105 0.96 5 17 2.1e-05 0.00088 19.5 0.5 1 23 113 136 113 136 0.97 6 17 0.00015 0.0064 16.8 0.8 1 23 142 165 142 165 0.97 7 17 2.1e-05 0.0009 19.5 0.3 1 23 171 194 171 194 0.95 8 17 2.3e-05 0.00098 19.4 2.3 1 23 200 223 200 223 0.98 9 17 0.00025 0.011 16.1 2.0 1 23 229 252 229 252 0.97 10 17 0.00014 0.0059 16.9 1.6 1 23 258 281 258 281 0.97 11 17 1.5e-05 0.00063 20.0 2.8 1 23 287 310 287 310 0.95 12 17 9.2e-06 0.00039 20.6 2.7 2 23 561 583 560 583 0.95 13 17 1.8e-06 7.5e-05 22.9 2.3 1 23 589 612 589 612 0.98 14 17 2.8e-06 0.00012 22.3 1.4 1 23 618 641 618 641 0.98 15 17 1.5e-06 6.6e-05 23.1 1.2 1 23 647 670 647 670 0.93 16 17 3e-06 0.00013 22.1 0.5 1 23 676 699 676 699 0.97 17 17 0.0001 0.0044 17.3 4.0 1 20 705 724 705 725 0.96
Sequence Information
- Coding Sequence
- atgtgcgcaaagagatttgaaaataagcGGAGTTTGCTGGTACACGTAAAGGCAGTGCACGTGGGTCGCGAAgttttcgcatgtgacaagtgcgggGAGaagttcagaaaaaaatcgcgtttGCTCtcccatcaaaagacagtacacgatggtcgcaaagattacgcatgcgacaagtgcgaacagAAATTTAGAGGAAAATGGCATTTGCTAAGGCACCTAAAGATAGTCCATGAGgttcgcaaagattacacatgcgataGGTGCGAGAAGACATACTTTGGTCAATGCAATTTGATAAGACACACAAAAACAgtttatgaaagtcgaaaagattacgcatgcgacaagtgcgagaagacatttggacaaaaagtgaaTTTGCTCTCCCATCAAacgacagtccatgaggggcgcaaagatttctcatgcgacaagtgcgagcagaaatttgggaaaaaagtttctttgatcagacaccaaaaaatagtacacgaaggtaacaaagatttcgcgtgcgacaagtgcgaaaagaaatttggacaaaaagatgctttgatcagacaccaaaaagcagtacatgagggtcgcaaagatttcacatgcgacaaatgcgagaagaaatttggaaaaaaatataatttgcttttacaccaaaagacagtccatgaaggtcgtaaagactacgcgtgcgacaagtgcgaaaagaaatttgggtttCAATGCAATTTGATAAATCACCAgaagatagtacacgaaggtcgcagagatttcgcatgcgacaaatgtgagaagaaatttggacgaaaattttatttgcttttacaccaaaagacagttcatgaaggtcgcaaagatcacGCATGTGAAAATtgccagaagaaatttggacgaaaatctcAATTAATCAAACATCAAAAGTCAGTTCACAAAGGGCTGCACGAAAGACACGTATCACGCGCACAAGCACGTCCAAATACACAGCATCTCATATCGTATCCAGCGTCAAGGATGATTCCCAACATTAGGACATCGAATGTACGGAGGTCGGAggcgcatataataataacgtgcACGTtgCCATACGAGATTAACTTTTCGTCACCCTGGATCTTCTGTCAACCCTTCAGCGGCGTCCTTCAATATCATCCACGAAGACCTACTGCAAGTTCCTCAAAGCAGCTGTGCGAGAgcaggagaaggaggaggaggaagaagaagaattttAACGGACTTTTAATGCTTCGAGGCTCTCTGCtgcttcCGTCGAATATAAAGAGCGGATTATGTTTTATAAACCCTTTGACGATGAGCCTTCGAGTACGCGTTTGGACATTGAGACACGCGTGTGTactacagcagcagtacacgaaagtcgcaagGATCGTGGATATGGACGTGAAAAGTGCAAAAATGAATCCGAAATCCCATCCGAATTGCTTAGACACCAAAGAAACGTTCACGAGGATCGCAAAAACTCGTGCCTGTGACTCAATGGCGCCACGCGGACTGCAGCACAGCCGTATGCGCATCCGAGCACAACGTGTTTTAATATCTGGTACTCGTATGCacttcgattatcataataaatgtaaaattcaagTAAATCCTCAATTGAAAGTTGATGGACATAAAACGGTtgaaatatttagaaaaaatactcCAACCAAATTATCGTGCGAGTGCAAAATATGTCGAAAAACATATAAAGATCAAGCAAGTCTAAAAagacatataaatataacacataatcggagcaaaccttttgagtgtgaaatctgtcacaaatcatttggataccagagtAAACTCAAAAGGCacgtaaatacagtacataatcggagcaaaccttttgagtgtgaaatttgtcacaaaacatttggactaaaagaaaatcttaaaactcatattaatacagtacatgatcgtatcaaaccattcaagtgtgatatttgtcacaaatcatttggacaaaaagaaAACCTTAAAACTCATATtgatgcagtacatgatcgtatcaaatccttcgaatgtgatatttgttacaaatcatttggatacaagagtGATCTAAATAAACACTTGAatatagtacatgatcggagcaaaccttttgagtgtgaaatctgtcacaaatcatttggataccagagtAAACTCAAAAGGCacctatgCCCCGGTGATCGCGTGGCATTTTTGCTCACGGCCCAAGCATTGTTGCAGCATAGGGCAGTGGATGATGCTCAACAAAAATGGTTTGAgaagtgtgtgtgcagcaggcCAGTGACACCCCATGAGATTCATCTGGATCTGCTCTGCCATGGGCGTGATGATGAAGAATCGatatatCGAGTTGAACACGCCGCATTCTGGCTCATGGCGCTAACACTGGTGCATGATGGGCGCCTGGAATATGATCAAGAATTTTTGTTCACCATATACATCGAGAACATGCTGGGAGAGCTATGA
- Protein Sequence
- MCAKRFENKRSLLVHVKAVHVGREVFACDKCGEKFRKKSRLLSHQKTVHDGRKDYACDKCEQKFRGKWHLLRHLKIVHEVRKDYTCDRCEKTYFGQCNLIRHTKTVYESRKDYACDKCEKTFGQKVNLLSHQTTVHEGRKDFSCDKCEQKFGKKVSLIRHQKIVHEGNKDFACDKCEKKFGQKDALIRHQKAVHEGRKDFTCDKCEKKFGKKYNLLLHQKTVHEGRKDYACDKCEKKFGFQCNLINHQKIVHEGRRDFACDKCEKKFGRKFYLLLHQKTVHEGRKDHACENCQKKFGRKSQLIKHQKSVHKGLHERHVSRAQARPNTQHLISYPASRMIPNIRTSNVRRSEAHIIITCTLPYEINFSSPWIFCQPFSGVLQYHPRRPTASSSKQLCESRRRRRRKKKNFNGLLMLRGSLLLPSNIKSGLCFINPLTMSLRVRVWTLRHACVLQQQYTKVARIVDMDVKSAKMNPKSHPNCLDTKETFTRIAKTRACDSMAPRGLQHSRMRIRAQRVLISGTRMHFDYHNKCKIQVNPQLKVDGHKTVEIFRKNTPTKLSCECKICRKTYKDQASLKRHINITHNRSKPFECEICHKSFGYQSKLKRHVNTVHNRSKPFECEICHKTFGLKENLKTHINTVHDRIKPFKCDICHKSFGQKENLKTHIDAVHDRIKSFECDICYKSFGYKSDLNKHLNIVHDRSKPFECEICHKSFGYQSKLKRHLCPGDRVAFLLTAQALLQHRAVDDAQQKWFEKCVCSRPVTPHEIHLDLLCHGRDDEESIYRVEHAAFWLMALTLVHDGRLEYDQEFLFTIYIENMLGEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -