Tbra006938.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000917.1:5391-12720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.053 2.3 8.8 1.1 1 23 30 53 30 53 0.96 2 20 0.00058 0.025 15.0 1.5 1 23 59 82 59 82 0.97 3 20 8.2e-06 0.00035 20.8 0.6 1 23 88 111 88 111 0.96 4 20 1.6e-05 0.00068 19.9 1.0 1 23 117 140 117 140 0.95 5 20 3.9e-05 0.0017 18.7 1.9 1 23 146 169 146 169 0.98 6 20 0.017 0.72 10.4 0.3 1 23 175 198 175 198 0.96 7 20 0.00014 0.0059 16.9 3.9 1 23 204 227 204 227 0.97 8 20 0.00041 0.017 15.4 0.1 1 23 233 256 233 256 0.97 9 20 1.9e-05 0.0008 19.6 4.3 1 23 262 285 262 285 0.97 10 20 0.0014 0.061 13.7 0.4 1 23 294 317 294 317 0.94 11 20 0.0055 0.23 11.9 1.0 8 23 330 346 329 346 0.95 12 20 5.4e-06 0.00023 21.4 0.9 1 23 352 375 352 375 0.95 13 20 2.5e-05 0.0011 19.3 2.2 1 23 381 404 381 404 0.98 14 20 1.4e-05 0.0006 20.1 0.3 1 23 410 433 410 433 0.97 15 20 3.2e-05 0.0014 18.9 0.3 1 23 439 462 439 462 0.96 16 20 0.003 0.13 12.7 4.6 5 23 501 520 493 520 0.96 17 20 0.11 4.7 7.8 0.4 1 23 526 549 526 549 0.94 18 20 4.7e-05 0.002 18.4 1.0 1 23 555 578 555 578 0.94 19 20 2e-05 0.00086 19.5 0.9 1 23 584 607 584 607 0.95 20 20 0.001 0.044 14.2 0.4 1 23 613 636 613 636 0.97
Sequence Information
- Coding Sequence
- atgcgacaagtgcgagaacaAATTTGGGCTAAAAGCAGATTTGATGAAGCACCAAACGacagacagtacacgaaggtcgcaaaagATCACGTATGCGACAActgtgagagaaaatttggccaaaaatGGATTATGATTCAGCACCGAAGGACCGTACACGAAGGTCTcaaggattacgcatgcaacaattgcgagagcaaatttggacaaaaacatcAATTGATCATACATCAGAAGACgattcacgaaggtcgcaaggattacgcatgtgacaaatgccaAAAGAAATTCGGGGATCCAAGCAGTTTGATCAGACACAAAAAatcaatccacgaaggtcgtaaggattacgcatgcgacaagtgcgaaaagaaatttaaggAACGAAGCACTTTGATTAAACATCAAAAagcagttcacgaaggtcgcaaagatttcgtttgcgacaagtgtgaaagaaaatttggccaaaaagggcatttgcttttacaccagaagacagttcacgaaggtcgcaaggattacgcatgcgacaagtgcgagaagaaatttgtactaaaatggattatgattcagcaccaaaggacagttcacgaaggtcggaaagatcaTGTATGCGAcgattgcgaaaagaaatttgcacaaaaaagtcATTTGCTCTTCCATCAAagaacagttcatgaaggtcgcaaagattatgcatgcgttGAGTGCAAGAGAAAATTTGTAGCTAAACCAGaattgttgaagcaccaaaggatagtacacgaaggtcgcaaagatcacACATGCGACAACTGCGACAgaaaatttggccaaaaagtgcatttgatcaggcaccaaaagacagtacacgaaggtcgcaaggattacgcatattacctatgtgaaaagtgcgcaaaaagatttggaaataaacggaGTTTGCTCATGCACATAAAAGCAGCTCAtgagggtaaaaaaaatttcacatggGGCCAAGTCCAAAAGAAATTTAGTGATCaaagaaatttgattaaacaccaaaaaacaagcCATGaggatcgcaaagattacgtatgcgacaagtgcgagaaaaaatttagagaacAGAGTGATTTGATGAGACACCAAACATTAGTTCACGAAgttcgcaaagattacgtatgcgacaagtgtgaaaagaaatttggtgaaaaatcgaaattgtttAGACACAAAAGAACAGTCCATCAGGGTgtcaaagattacgcgtgcgacgagtgcgagaagaaatttggactaaaagcAGATTTgatgaagcaccaaaggacagtacacgaaggtcgcaaggattatgcatgtgataaatgccAAAAGAAATTCGGGGAGCGTggcaatttaataaaacatcagatgatagtccacgaaggtcgtaaagattacgaatgcgacaagtgcgagctgAAATTTTGGAATGAAAGCAGaattgttgaagcaccaaaggatagtacacgaaggtcgcaaagatcacACATGCGACACTGTGACAgaaaatttggccaaaaagtgcatttgatcaggcaccaaaagacagtgcacgaaggtcgcaaagattacgcatgcgacaagtgcgagaagaaatttggactaaaatggattatgattcagcaccaaaaaacagttcacgaaggtcgtaaagatcaTGTATGCgacgagtgcgagaagaaatttggacgaaaaatgcagctgctcagacaccaaatggcagtacatgaaggtcgcaaagattatgcatgcgttAAGTGCAAGAGGAAATTTGTAACTAAATCAGAGTTGTTGAAACACCAAAAGGCAGTACACGacgatcgcaaagatttcgcatgcgacaaatgcgagaagctatttggtcaaaaaatgtatttgctCATCCACCAAATGACAGTCCATGaggatcgcaaagattacCGGCAAAAGGAATCTcgttgcgctgctgcgtgccGCCGTCTTACACACAACAGTCGTCGACCCTCGAGAGCCGCGTCcctatag
- Protein Sequence
- MRQVREQIWAKSRFDEAPNDRQYTKVAKDHVCDNCERKFGQKWIMIQHRRTVHEGLKDYACNNCESKFGQKHQLIIHQKTIHEGRKDYACDKCQKKFGDPSSLIRHKKSIHEGRKDYACDKCEKKFKERSTLIKHQKAVHEGRKDFVCDKCERKFGQKGHLLLHQKTVHEGRKDYACDKCEKKFVLKWIMIQHQRTVHEGRKDHVCDDCEKKFAQKSHLLFHQRTVHEGRKDYACVECKRKFVAKPELLKHQRIVHEGRKDHTCDNCDRKFGQKVHLIRHQKTVHEGRKDYAYYLCEKCAKRFGNKRSLLMHIKAAHEGKKNFTWGQVQKKFSDQRNLIKHQKTSHEDRKDYVCDKCEKKFREQSDLMRHQTLVHEVRKDYVCDKCEKKFGEKSKLFRHKRTVHQGVKDYACDECEKKFGLKADLMKHQRTVHEGRKDYACDKCQKKFGERGNLIKHQMIVHEGRKDYECDKCELKFWNESRIVEAPKDSTRRSQRSHMRHCDRKFGQKVHLIRHQKTVHEGRKDYACDKCEKKFGLKWIMIQHQKTVHEGRKDHVCDECEKKFGRKMQLLRHQMAVHEGRKDYACVKCKRKFVTKSELLKHQKAVHDDRKDFACDKCEKLFGQKMYLLIHQMTVHEDRKDYRQKESRCAAACRRLTHNSRRPSRAASL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -