Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010000369.1:272676-294468[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 7.3 3.1e+02 2.1 0.2 5 23 27 46 26 46 0.93

2 21 0.0015 0.064 13.7 0.4 3 23 54 75 52 75 0.94

3 21 0.00069 0.029 14.7 2.6 1 23 81 104 81 104 0.96

4 21 0.00068 0.029 14.8 1.1 1 23 110 133 110 133 0.97

5 21 0.0043 0.18 12.2 0.4 5 23 141 160 140 160 0.96

6 21 0.00041 0.017 15.4 3.2 1 23 166 189 166 189 0.97

7 21 3.5e-05 0.0015 18.8 0.7 3 23 197 218 195 218 0.95

8 21 0.041 1.7 9.2 2.9 1 23 224 247 224 247 0.96

9 21 2.2e-05 0.00095 19.4 1.2 1 23 253 276 253 276 0.97

10 21 0.00025 0.011 16.1 2.2 1 23 282 305 282 305 0.98

11 21 0.013 0.56 10.7 4.9 1 23 311 334 311 334 0.95

12 21 1.7e-05 0.00072 19.8 0.3 1 23 340 363 340 363 0.95

13 21 1.5e-06 6.6e-05 23.1 1.0 1 23 369 392 369 392 0.98

14 21 2.2e-06 9.5e-05 22.6 1.3 1 23 404 427 404 427 0.98

15 21 8.9e-06 0.00038 20.7 0.9 1 23 433 456 433 456 0.97

16 21 0.058 2.5 8.7 0.4 1 20 804 823 804 826 0.93

17 21 2e-06 8.3e-05 22.7 0.1 1 23 884 906 884 906 0.98

18 21 5.7e-06 0.00024 21.3 0.7 3 23 914 934 913 934 0.97

19 21 1.3e-05 0.00056 20.1 0.1 1 23 939 961 939 961 0.97

20 21 0.00029 0.012 15.9 2.3 1 23 967 989 967 989 0.95

21 21 0.00046 0.02 15.3 2.6 1 23 995 1018 995 1018 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	7.3	3.1e+02	2.1	0.2	5	23	27	46	26	46	0.93
2	21	0.0015	0.064	13.7	0.4	3	23	54	75	52	75	0.94
3	21	0.00069	0.029	14.7	2.6	1	23	81	104	81	104	0.96
4	21	0.00068	0.029	14.8	1.1	1	23	110	133	110	133	0.97
5	21	0.0043	0.18	12.2	0.4	5	23	141	160	140	160	0.96
6	21	0.00041	0.017	15.4	3.2	1	23	166	189	166	189	0.97
7	21	3.5e-05	0.0015	18.8	0.7	3	23	197	218	195	218	0.95
8	21	0.041	1.7	9.2	2.9	1	23	224	247	224	247	0.96
9	21	2.2e-05	0.00095	19.4	1.2	1	23	253	276	253	276	0.97
10	21	0.00025	0.011	16.1	2.2	1	23	282	305	282	305	0.98
11	21	0.013	0.56	10.7	4.9	1	23	311	334	311	334	0.95
12	21	1.7e-05	0.00072	19.8	0.3	1	23	340	363	340	363	0.95
13	21	1.5e-06	6.6e-05	23.1	1.0	1	23	369	392	369	392	0.98
14	21	2.2e-06	9.5e-05	22.6	1.3	1	23	404	427	404	427	0.98
15	21	8.9e-06	0.00038	20.7	0.9	1	23	433	456	433	456	0.97
16	21	0.058	2.5	8.7	0.4	1	20	804	823	804	826	0.93
17	21	2e-06	8.3e-05	22.7	0.1	1	23	884	906	884	906	0.98
18	21	5.7e-06	0.00024	21.3	0.7	3	23	914	934	913	934	0.97
19	21	1.3e-05	0.00056	20.1	0.1	1	23	939	961	939	961	0.97
20	21	0.00029	0.012	15.9	2.3	1	23	967	989	967	989	0.95
21	21	0.00046	0.02	15.3	2.6	1	23	995	1018	995	1018	0.97

Sequence Information

Coding Sequence: ATGATCAACTTAGTCACCAGTCACCACAAGAAACAAAGACTAGTGTTTCACGAAGATCAGAAAGATTACTCATATGagaaatgcgagaagaaatttggggctcagagaaattcgataaagcaccaaaaaatagtccacaaGGGTTGTAAAGATTTAGCTTGTACCaattgcgggaagaaatttggaagtcAATCGCAACTGCTCTTCCACCTGAAGATAGTACACGATgtcttcaaagattacttatgtgacaattgtgggaagaaatttgtaaatatatgttatttacGCTTGCACAaaagaacagtccatgaggaTCGAAAAGATCACGTATGCGATAGGTGCGAGGAGAAATTCGGAATCAGATCAAATTTGTTAAatcaccaaaggacagtacacgaaggtcggagagatttcgacaaatgcgataagaagtttggacaaaaacagtttttgcttgtccaccaaagaacagtccatgaaggtcataaagattatgcatgcgtcaaatgcgaaaaaaaattcgaacaaaaatcgcattttcttgtccataaaaaaacagtacacgaaggtcggaaagattatggATGTGACTattgcgaaaagaagtttggacaACAATCTTCTTTGAACAGACACCGAAAGgcagtacacgatggtcgcaaaaattatgcatgcgGCAAATGCGAGATGAAATTTGGACTTAAACATTCTCTTCTCAAACACCATAAAGtagtgcacgaaggtcgtaaagattttgcatgtaacatttgcgagaagaaatttggacgcaaACCGCATTTGCTtatccaccaaaagacagttcatgaaggtcaaaaagattttgaatgtgataagtgcgagaagaaatttggccATAAACCGTATCTGCTTTTGCACcagaagacagtacacgaaggttgtaaagattacgcatgcgacaagtgcgagaagaaatttggacttaaaCATCATCTTCTCAAACACCATGAAGtagtgcacgaaggtcgtaaagattttgcatgtaacatttgcgagaagaaatttgggcaaaaaCCGCAATTGCGCAGACATCAAGaaatagtccacgagggtcgcaaagattttgaatgtgacaagtgtgaaaagaaatttggacaaagaTCAGCTTTGTTAAGGCATCAaaggacaatacacgaaggtcgtaaagattttacatgtcgcaaagattacccgtgcgacaagtgcgagaaaaaatttggaaaaaaatcgaacttGTTCAttcaccaaagaacagtccacgaaggtcacaaagattacgtatgtgacaagtgcgaaaaaaaatttggacgaaaatacAATTTGCTTCtgcaccaaaagatagtacacggaggtTCTTTGACGCAGACTCGTTCATTATTGAATGATGTTAAAAGTGGAAcTGAAACATGTTTTGCACTGACTGCTGGACCtcaagttgaattaaattttgaaacttgcAGTACTACGCATCGCCAGCGAGAGGAGCTGGATTCCGAGGAGATAAGAGCAGCTTCCGACGACGAggacagcgacgacgacgacaatgaagacgaagaagagaaCGAGCCAATTGTCATTCGCTGCAGAATCTGCGCCCGAGTCCTGCCGGCTGACTCGCTCGACGCGGCGATCTGccttttcgacgagaaaaaaaatgagaaggAAGAGGACGAGGCGAGAAAGGAGTGCAGCGATCTTCAAAGTCACATTCTCAAGTACCTACACATAAGGATATCTCCCGACGACCGACTGACAAAAATCGTCTGCGCGACTTGCGTCGATAAGCTCGAGATGATACACGAATTCGCCACCAAGGCTCTGGAGAGTCAGAAGAAGCTACGCGCTGAATTGTTCTGCAAGAGATCTTCGACGAGTTTACAGCAGCAAGTGGACGATCGGCCGACGACCGACGATGATTCCCTCCATGTTGCGGTACAGGATAATAAAAGCTTGCTGCACACGATGTTGACCAAGAAGTTGAAAGGGGCCAAGAAcaagaagaaggaagaagcTGAGGAGGCTGCTCCGAAAAATCGCCAAAGAACCCCAAGTACCGAAGAGATGGAGGTGAAAATCGATCCCATGTTGTTTCTCCAGTGTGCCCTGGAGTGCTCCTTATCTGACGAGAATTCCGAACTATCGAACGATTATTCGTCAGAGCGAcaatcagcagcaacagcaaccgACAATCATCATCGAGCTTTCGCGATCGGGCCAACGAGCAAGAAAAAGCCCCGCCGCTGTATCAATAAGAAGAGCAATTTTCTGGATGTCGACGCCgaaaatgacgacgacgacaacgagaaAAATTTCGACAGCATCGAGGAGGTCGTCgacgacagcgacgacgatcACAACTCATCGTCGAGATCGGCCGATCGTCGTCAACACGTCTGCAAGGTCTGTGCCAAGTCCTACGGCTCGCAGCTAGCCCTGCAGAATCATCTCTGGTCGCATCTACCCACGGACCAGGAGGACGTCGAGCATCATCATAATCGTCAACATCGTCGCTTCGCCGACGTCGTTAACGGATCGTCGCAGTCATCGCTGCCACAGCCTCGCagctccgacgacgacgaattaGCCAGCGGCGCACGAATTCTAGATACCGTCAACGAGGTGGACTGCTTCATCTGTCCGATTTGCGGGAAAAAGATCTCCACCAAGGGAAATTTAAAGGTACATCTGGAGACGCACAGGCCTAAGGGAAAGCACGGCTGCGACATCTGCGGCAGGATCTTCAAGACGCAATCGAATCTGTTCCGTCACAAGGAGTACCACAGCGGCGTGCAGTTCCCCTGCTCGGTCTGCGGCCGCGTCTACCCGACCAACTCGACTCTGCGCGCCCACAGCATCACCCACTCGGACCTGCGTCCTCACGCCTGTCCGCTCTGCGACAAGACCTTCAAACGCAATCAGGATCTCAAGTTTCACATCAATCAGCACACCGGGGCGCGTCCCTATCGCTGCCCCTACTGTCCCAAGGCGTTCGCCAGCTCGGGCAACTGTTTCTCGCATCGCAAGCGCATGCATCCGTGCGAGGTCAATCGAGATCGGCAGCGAGCCGCCGATCTCATGAGAGACAAAGCGGAGCATCCAATTgtgattttatttgaaaactaCACGACGACAATGGGGAGTACAGGAGAAAATTTTCCACAATAT
Protein Sequence: MINLVTSHHKKQRLVFHEDQKDYSYEKCEKKFGAQRNSIKHQKIVHKGCKDLACTNCGKKFGSQSQLLFHLKIVHDVFKDYLCDNCGKKFVNICYLRLHKRTVHEDRKDHVCDRCEEKFGIRSNLLNHQRTVHEGRRDFDKCDKKFGQKQFLLVHQRTVHEGHKDYACVKCEKKFEQKSHFLVHKKTVHEGRKDYGCDYCEKKFGQQSSLNRHRKAVHDGRKNYACGKCEMKFGLKHSLLKHHKVVHEGRKDFACNICEKKFGRKPHLLIHQKTVHEGQKDFECDKCEKKFGHKPYLLLHQKTVHEGCKDYACDKCEKKFGLKHHLLKHHEVVHEGRKDFACNICEKKFGQKPQLRRHQEIVHEGRKDFECDKCEKKFGQRSALLRHQRTIHEGRKDFTCRKDYPCDKCEKKFGKKSNLFIHQRTVHEGHKDYVCDKCEKKFGRKYNLLLHQKIVHGGSLTQTRSLLNDVKSGTETCFALTAGPQVELNFETCSTTHRQREELDSEEIRAASDDEDSDDDDNEDEEENEPIVIRCRICARVLPADSLDAAICLFDEKKNEKEEDEARKECSDLQSHILKYLHIRISPDDRLTKIVCATCVDKLEMIHEFATKALESQKKLRAELFCKRSSTSLQQQVDDRPTTDDDSLHVAVQDNKSLLHTMLTKKLKGAKNKKKEEAEEAAPKNRQRTPSTEEMEVKIDPMLFLQCALECSLSDENSELSNDYSSERQSAATATDNHHRAFAIGPTSKKKPRRCINKKSNFLDVDAENDDDDNEKNFDSIEEVVDDSDDDHNSSSRSADRRQHVCKVCAKSYGSQLALQNHLWSHLPTDQEDVEHHHNRQHRRFADVVNGSSQSSLPQPRSSDDDELASGARILDTVNEVDCFICPICGKKISTKGNLKVHLETHRPKGKHGCDICGRIFKTQSNLFRHKEYHSGVQFPCSVCGRVYPTNSTLRAHSITHSDLRPHACPLCDKTFKRNQDLKFHINQHTGARPYRCPYCPKAFASSGNCFSHRKRMHPCEVNRDRQRAADLMRDKAEHPIVILFENYTTTMGSTGENFPQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -