Tbra014796.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001194.1:424219-437357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.6e-05 0.0032 17.7 2.6 1 23 15 38 15 38 0.98 2 19 0.0069 0.3 11.6 0.4 1 23 44 67 44 67 0.97 3 19 2.2e-05 0.00093 19.4 2.2 1 23 73 96 73 96 0.97 4 19 0.0002 0.0087 16.4 1.0 3 23 104 125 102 125 0.97 5 19 2e-05 0.00086 19.6 0.7 1 22 131 152 131 152 0.96 6 19 4.6e-05 0.002 18.4 0.7 1 23 160 183 160 183 0.97 7 19 7.6e-05 0.0032 17.7 2.6 1 23 189 212 189 212 0.98 8 19 0.00097 0.041 14.3 0.7 1 23 218 241 218 241 0.97 9 19 7.6e-05 0.0032 17.7 2.6 1 23 247 270 247 270 0.98 10 19 0.0069 0.3 11.6 0.4 1 23 276 299 276 299 0.97 11 19 1.9e-05 0.00082 19.6 2.1 1 23 305 328 305 328 0.97 12 19 0.0002 0.0087 16.4 1.0 3 23 336 357 334 357 0.97 13 19 3e-05 0.0013 19.0 2.6 1 23 363 386 363 386 0.97 14 19 3.3e-05 0.0014 18.9 0.9 1 23 392 415 392 415 0.97 15 19 0.00066 0.028 14.8 0.6 2 23 422 444 421 444 0.96 16 19 0.00044 0.019 15.3 2.3 1 23 450 473 450 473 0.98 17 19 8e-06 0.00034 20.8 1.0 1 23 479 502 479 502 0.97 18 19 1.2e-05 0.00052 20.2 0.5 1 23 508 531 508 531 0.97 19 19 4.2e-05 0.0018 18.6 0.3 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- ATGTTGcggcaccaaaggacagttcacgagggtcacaaagattttacatgtgacaagtgtgagaagaagtttggacaCAAACGGAGTTTACTTTTGCACATAAatacagtccacgaaggtcgcaaagattttgcatgtgacgagtgtgaaaaaaaatttggactcaaATTAGATATGTTGCAGCACCGAAGGACagttcacgagggtcgcaaagattacgcatgtgacaagtgtgagaagaaatttggacacatATCGAATTTACTCAAACACCGAAGAACagttcacgagggtcgcaaagattacggatgcaacaaatgcgaaaagaaatttggactaaaagcCGATTTGTTTCGGCAtcaaaagacaatacacgagggtcgcaaagatttcgcatgcgataagtgtgaACGTAAGTTTACGCGTAGTGTagatttgttaaagcaccaaaggacagttaacgggggtcgcaaagattacgcatgtgacaattgcgaaaagaaatttggactaaaatcgaCATTagtcagacaccaaaagacagttcacgaaagtcgtaaagattttacatgtgacaagtgtgagaagaagtttggacaCAAACGGAGTTTACTTTTGCACATAAatacagtccacgaaggtcgcaaagattttgcatgtgacgagtgtgaaaaaaaatttggactcaaATTAGACATGTTTcggcaccaaaggacagttcacgagggtcacaaagattttacatgtgacaagtgtgagaagaagtttggacaCAAACGGAGTTTACTTTTGCACATAAatacagtccacgaaggtcgcaaagattttgcatgtgacgagtgtgaaaaaaaatttggactcaaATTAGATATGTTGCAGCACCGAAGGACagttcacgagggtcgcaaagattacgcatgtgataggtgtgataagaaatttggacacatATCGAATTTACTCAAACACCGAAGAACagttcacgagggtcgcaaagattacggatgcaacaaatgcgaaaagaaatttggactaaaagcCGATTTGTTTCGGCAtcaaaagacaatacacgagggtcgcaaagatttcgcatgcgataagtgtgaATGTAAGTTTACGCGTAGTGTagatttgttaaagcaccaaaggacagttcacgagggtcgcaaagattacgcatgtgacaagtgcgaaaagaaatttggactaaaatcgaCATTagtcagacaccaaaagacagttcacgaaggtcgtaaagatatcccatgcgataagtgcgaacagaaatttggacttaaaACCGATTTGTTTcggcatcaaaagacagtacacgagggtcggaaagattttacatgtgaTAAGTGTGAAAGTAAATTTAGACGTACTTTCgatttgttaaagcaccaaatgacagtacacgaaggtcgaaaagctTATGCATGTggcaagtgcgagaagaaatttggaaaaaaatcagatttgttgaggcaccaaaaaacagtccatgaaggtcacaaagatttcgcatgcaacaaatgtgaaaagaaatttggacagaaaCCAAGTTTGATCatccaccaaaggacagtccatgaaggtcgcaaagattacgcatgtgatagatgcgaaaagaaatttggacagaaaCCAAGTTTGATCatccaccaaaggacagtccacgaagtcggaaaaattttgcatgcgaaaaattcgagaaaaaatctaGACATAAAGATACGAAAgattattttagaatttttaatatttaacaatCTCATCCAAAATCAACTGCATTCACTGTACATTGTGGACGAcacaaagaagaagaagaagaagaagaagaaagcgAAGGAGCGCGAAAGAGGGAATACGCTCGCTCGGCGCTGCGCCTCGTGCACGATGCGGAGACGACGAGGAACCCCCGACATTGATCGGAGcagagcatcagcagcagcaacaacaacaacaacgacagcGACCCACCTGCCAACGCGCACTTTAAAAAGTTTCGCGATATCCAGAAGTTTCCCCGTGGGCCGATCAAACTTGCGGCTTTTGTTACACGGGCGTGTGCGGagttgtgtgtgcgtgctcgAATTCGCCATTATTATAACAAGTGATCGCCCGAGCTTCAGGTGGTGTGTGTACCCGTGCGCGAGTGCGATGTTGTTGTTTATCGTCGATGAAAATCGTCGTCGACCGAGAgtcagttaa
- Protein Sequence
- MLRHQRTVHEGHKDFTCDKCEKKFGHKRSLLLHINTVHEGRKDFACDECEKKFGLKLDMLQHRRTVHEGRKDYACDKCEKKFGHISNLLKHRRTVHEGRKDYGCNKCEKKFGLKADLFRHQKTIHEGRKDFACDKCERKFTRSVDLLKHQRTVNGGRKDYACDNCEKKFGLKSTLVRHQKTVHESRKDFTCDKCEKKFGHKRSLLLHINTVHEGRKDFACDECEKKFGLKLDMFRHQRTVHEGHKDFTCDKCEKKFGHKRSLLLHINTVHEGRKDFACDECEKKFGLKLDMLQHRRTVHEGRKDYACDRCDKKFGHISNLLKHRRTVHEGRKDYGCNKCEKKFGLKADLFRHQKTIHEGRKDFACDKCECKFTRSVDLLKHQRTVHEGRKDYACDKCEKKFGLKSTLVRHQKTVHEGRKDIPCDKCEQKFGLKTDLFRHQKTVHEGRKDFTCDKCESKFRRTFDLLKHQMTVHEGRKAYACGKCEKKFGKKSDLLRHQKTVHEGHKDFACNKCEKKFGQKPSLIIHQRTVHEGRKDYACDRCEKKFGQKPSLIIHQRTVHEVGKILHAKNSRKNLDIKIRKIILEFLIFNNLIQNQLHSLYIVDDTKKKKKKKKKAKERERGNTLARRCASCTMRRRRGTPDIDRSRASAAATTTTTTATHLPTRTLKSFAISRSFPVGRSNLRLLLHGRVRSCVCVLEFAIIITSDRPSFRWCVYPCASAMLLFIVDENRRRPRVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -