Tbra007199.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000822.1:273381-285559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0058 0.25 11.8 1.1 1 23 212 235 212 235 0.92 2 18 0.00026 0.011 16.1 1.0 2 23 242 264 241 264 0.96 3 18 0.00025 0.011 16.1 0.6 1 23 270 293 270 293 0.96 4 18 0.79 34 5.1 0.1 5 17 295 307 294 308 0.89 5 18 0.00027 0.012 16.0 0.6 1 23 321 344 321 344 0.97 6 18 1.7e-05 0.00071 19.8 0.2 1 23 350 373 350 373 0.96 7 18 4.7e-06 0.0002 21.5 2.3 1 23 379 402 379 402 0.97 8 18 8.4e-05 0.0036 17.6 0.2 1 23 408 431 408 431 0.91 9 18 6.8e-05 0.0029 17.9 0.5 3 23 439 460 438 460 0.96 10 18 1.7e-05 0.00071 19.8 0.2 1 23 466 489 466 489 0.96 11 18 6.6e-06 0.00028 21.1 0.5 1 23 495 518 495 518 0.97 12 18 3.3e-06 0.00014 22.0 2.2 1 23 524 547 524 547 0.97 13 18 0.0015 0.063 13.7 0.1 1 23 553 576 553 576 0.94 14 18 0.018 0.75 10.3 3.5 1 23 582 605 582 605 0.97 15 18 6.5e-06 0.00028 21.1 3.0 1 23 611 634 611 634 0.97 16 18 2.3e-05 0.00099 19.4 2.2 1 23 640 663 640 663 0.98 17 18 0.00046 0.02 15.3 0.6 1 23 669 692 669 692 0.96 18 18 8.2e-06 0.00035 20.8 0.8 1 23 698 721 698 721 0.96
Sequence Information
- Coding Sequence
- ATGAATCGTGTCAGCTCTTCGGTGCATCACGTGCTTCATGCTCTGCGACACAATCGCCATGCTCTTCCGCATGCTCTGAGGCAACGGCTGGTCGCGGCGCTGGTATTCCCTTACCTGGATTATGCAGCGCCTCTCATCCTTGACCTGGACGCCCATAACTCTGCGAAGCTTCATCGTCTTCACAACTCTGCAGTTAGATTTGTCTTCGGCAACATCCCCTACAACGCACACGTCACACCTTATCGGCTCGCTTTGGGCTGGTTGTCGTCGCGACGGCGGTGTGAATACATTGCTGTTTTGCTGGCGTTGAAAATCATCTCAACCCGGGAACCTCGTGGCCTCGCTGAGCTTTTCACCGTGCGAGAGAGGCAACCGGATGAGATCGTGACTAGGAGCCGCGCCGTCCGCCTGGTGGTCTCAAGCCCGAATACTGCGATGTTGAGAAGAGGTTTTGTGGCTTCTGTGTCGCGGCTCATCAACGGTCTGCCTTTCATCGAGGACCCGCGCTGTCCCCCACCCTCTGCTATTCTCAAGGCTCAACTTCATAGTCACCTCTACTTGCTCGATGTCCAGGATTGGCGTCGACGGTGTGAGGCCGAGGGTCTTACTTATGAGCCCCGATGTCTCAACGGTTACCCATGTAACCAGtgtaagaagaaatttgtgaaaagaTCAATTTTGTTTGCGCACCAAGAATTCgtacacaaagatcgtgaATATgtcacatgcgacaagtgcgagagaaaatttgaaaataaatcaactttgcTCGAGCACACAAAAATATACCACGagattttcaaagattatttatgtgaagtGTGCACCAAgagatttgtaaataaaaagagtTGGCTCTTGCACATTAAGACGGTAcacgacaagtgtgaaaagaaattcagaCAGAAATCGAAATTGATCATAAGAGACCAaaggacaatacacgaaggtcgcaaagattacgcatgcgacgtttgtgaaaaaaaaattgataaaaagtcaaaattaatcaggcaccaaaaaacagtccatgaggatcgcaaagactacgcatgcgacgtttgtgaaaaaaaatttgtagatCCAAGCACTTTAAGCAGACACAAAgaaacaatccacgaaggtcgaaaagattttgcttgtgacaagtgcgagaaaaaatttacacaaaaagggCACTTGCTcgtacaccaaaaaacagtccatgaggatcgcaaagactacgcatgcgacgtttgtgaaaaaaaatttgtagatTCAAGCACTTTAAGCAGACACAAAGAagcaatccacgaaggtcgcaaagataaCGCATGCGACGCGTGTGGAAAACAATTcaatgaaaagtcaaaattaatcaggcaccaaaaaacagtccatgagggtcgtaaagattacgcatgcgacgtttgtgaaaaaaaatttgtagatCCAAGTACTTTAAGCAGACACAAAgaaacaatccacgaaggtcgaaaagattttgcttgtgacaagtgcgagaagataTTTGGAGATCGGCGaaatttgatcagacaccaaaagacagtacacgaaggtcggaaagattacgcatgtgacaagtgcgagaaaaaatttacacaaaaagggCACTTGCTcgtacaccaaaaaacagtccatgagggtcgcaaagactacgcatgcgacgtttgtgaaaaaaaagttgtagatTCAAGCACTTTAAGCAGACACGAAAAagcaatccacgaaggtcgaaaagattttgcatgtgataagtgcaagcagaaatttggatacaaatgTAGTTTGGTCTTGCACAGGAAAACAGTCCACGACGGTCGCatagactacgcatgcgacaaatgcgaaaagaagtttAGACATAAAATCAATTTGCTTCGACACCTAAAAACTGTACACGATGGTCGTAAAGACtacacatgtgacaagtgtgagaagaagtttggacaaaaagcTAATTTGCTTATCCATCacaaaacagtacacgaaggtcaaaaagattttgcatgtaacaggtgcgagaagatgtttggattaaaatcgaatttgctctatcaccaaaaaatagtccacgaaggtcacaaagattttgcatgcgacgagtgcgagaagaaatacAGTCAAAAATACAATTTGATTAAGCACAAAataacagtccatgaagAATCTCTTGTGATCGATCGGAAATCGCTCGTCCGAATTTACGTCGCTCCGACACAATACCCTGCGCGCGGATCCCCGCGCACGAGCACCAGAATCGCGTTTATTGTTCCGCGTAAATCTGCTCGCACactgcgtatAATAACATCACGTTCGCGTGGCGTACTTATGactgaaaaagagagagaagaaagaaaaaaattgcgggGGAAGGAGGAGAAAAgaacgaagaaagaaaaaagggcaGGCAGCGGTagctgcgccgctgctgccctGCAAAACTTACGAGATGCTGCCGCAGAAGAAACTCtgttttacattataaaagtgtgtataatacgagGCAAAGAAGCAAAGGGAGAAGGAATAAAATGTGTatggtatattataataaaagtgtCGGGGCGGCCCCGCGGTCCATGTGCGCGGCTACAAATAACGCATAACAACACGCAAGAAGCGCAGCCACGAGCCGCacatgatcgtcgtcgtcctgctgctgctactttgcCAATCGACTGTGTAGTTTTGCACACATGCGCACACACCAGCGCACACACGACTCCGACTTACGGTATATAA
- Protein Sequence
- MNRVSSSVHHVLHALRHNRHALPHALRQRLVAALVFPYLDYAAPLILDLDAHNSAKLHRLHNSAVRFVFGNIPYNAHVTPYRLALGWLSSRRRCEYIAVLLALKIISTREPRGLAELFTVRERQPDEIVTRSRAVRLVVSSPNTAMLRRGFVASVSRLINGLPFIEDPRCPPPSAILKAQLHSHLYLLDVQDWRRRCEAEGLTYEPRCLNGYPCNQCKKKFVKRSILFAHQEFVHKDREYVTCDKCERKFENKSTLLEHTKIYHEIFKDYLCEVCTKRFVNKKSWLLHIKTVHDKCEKKFRQKSKLIIRDQRTIHEGRKDYACDVCEKKIDKKSKLIRHQKTVHEDRKDYACDVCEKKFVDPSTLSRHKETIHEGRKDFACDKCEKKFTQKGHLLVHQKTVHEDRKDYACDVCEKKFVDSSTLSRHKEAIHEGRKDNACDACGKQFNEKSKLIRHQKTVHEGRKDYACDVCEKKFVDPSTLSRHKETIHEGRKDFACDKCEKIFGDRRNLIRHQKTVHEGRKDYACDKCEKKFTQKGHLLVHQKTVHEGRKDYACDVCEKKVVDSSTLSRHEKAIHEGRKDFACDKCKQKFGYKCSLVLHRKTVHDGRIDYACDKCEKKFRHKINLLRHLKTVHDGRKDYTCDKCEKKFGQKANLLIHHKTVHEGQKDFACNRCEKMFGLKSNLLYHQKIVHEGHKDFACDECEKKYSQKYNLIKHKITVHEESLVIDRKSLVRIYVAPTQYPARGSPRTSTRIAFIVPRKSARTLRIITSRSRGVLMTEKEREERKKLRGKEEKRTKKEKRAGSGSCAAAALQNLRDAAAEETLFYIIKVCIIRGKEAKGEGIKCVWYIIIKVSGRPRGPCARLQITHNNTQEAQPRAAHDRRRPAAATLPIDCVVLHTCAHTSAHTTPTYGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -