Tbra002744.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000747.1:27054-38622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0058 0.25 11.8 0.0 1 23 288 311 288 311 0.94 2 18 6.4e-05 0.0027 18.0 3.0 1 23 317 340 317 340 0.97 3 18 0.14 5.8 7.5 1.3 5 23 350 369 343 369 0.90 4 18 6.8e-05 0.0029 17.9 4.4 1 23 375 398 375 398 0.97 5 18 0.00049 0.021 15.2 0.7 1 23 404 427 404 427 0.96 6 18 5e-06 0.00021 21.5 1.2 3 23 455 476 453 476 0.95 7 18 0.00032 0.014 15.8 0.9 1 23 482 505 482 505 0.94 8 18 1.5e-05 0.00064 20.0 1.0 1 23 511 534 511 534 0.97 9 18 1.7e-05 0.00073 19.8 3.2 1 23 540 563 540 563 0.97 10 18 1.2e-05 0.00049 20.3 0.6 1 23 569 592 569 592 0.96 11 18 1.1e-05 0.00048 20.3 2.6 1 23 598 621 598 621 0.97 12 18 1.5e-06 6.5e-05 23.1 3.2 1 23 627 650 627 650 0.98 13 18 2.4e-05 0.001 19.3 0.4 1 23 656 679 656 679 0.97 14 18 1.3e-05 0.00054 20.2 0.6 3 23 687 708 685 708 0.97 15 18 0.13 5.5 7.6 1.2 1 17 714 730 714 737 0.87 16 18 0.0001 0.0044 17.3 1.6 1 23 743 766 743 766 0.95 17 18 9.6e-08 4.1e-06 26.9 2.8 1 23 772 795 772 795 0.97 18 18 7.7e-06 0.00033 20.9 2.6 1 23 801 824 801 824 0.97
Sequence Information
- Coding Sequence
- ATGCAGCTAACCGATGCCGCGGTGAtcacgaaaattttgaacGATCACCAAGTGTTCGAGTATCGAATGGATCTCGTTGAGCGTCTGCTAAAGGACGCATCTTTCAAGGAAATAGCTAGGAACATAACGGTGAAGAATGATTTATCTTACTATAAATTTTTGCAGTTAAGTCCGAAAGAGGCAGCCAAAGAAGTTACACGCAAGGAATTCTTCGATTTTGTTAAATCGGGGAGTTTGGAGAGGCCGCTTGATATTTGTAAAACAGCTAATTTTATGTGCCTGTCCGAGAAACTATTGAGAGAATTTTGCTTCATATGGGCACCAACTTCTTTCTATTTGTTAAGACAACAGACGATGCCGATTGAGACCTGTGAGATGACCGCCGAGCTTTTGATGAACCaagatttatgtaatattatcTTGGCGACTGAAGGCCCGAGTCTTGAGGGCAGAAGAGGAAATGTAGAAGAAGATGTAAACCTCATCTTGGATTTACGTAAACCTCGGCGGATAAAGCCCAAAGTCATGAGGACAGCGAAAAGAAGACGTGGTCGGCTGGGTGGATACCAAAAAGCAGTACCAGAAGTCAGGATTTGGATTAAAATAGGGGCTACTCGGAAATACCGCCGAATAACGAACATGTGGGAAGTACATCGTACAAGCAGCTGGAGAGGGCTCCGGATGGATCAGTTGGCGTTGTCCCTTTGCTCATCCCCTTCCACTCCTTGGCCCGTTTTTGACCATTTCCCCTTGGGCTACGCTCCTGgcATCAAAATGGATAAATGTGATAAAAAATCAGAGGAAGTTGTCTCAAAGGATGATTTAAGTGAgcacgacattgttgtttcagacgacaagCAATACAtctgtgatatttgtcaggaggcatttacactagaatcaagcatgattaCACACCGAGACATAATTCacagtatacaaaaaaattactcatgcgacaaatgcgaaaagaattTTGAGTTtagaagtcatttgagtagacaccaaatatcagtccACAAAGgctgcaaagattttgcatccGACCggtgcgacaagaaatttttgaaaaaatcaagtttgtttacgcaccaaaaattagtacataaaaATGGCGATGATTTCACGTGTAACAAGTgcgatagaaaatttcaaaacaaatcGACTTTActtaaacacaaaaaaatattccacgatgttttcaaagattatttgtgTGAAAGGTGCGCGAAGCgattcggaaataaacagagtttgcaGTTACACATAAAAACTGTCCATAAAAACAGATCAAAAGATTACGTACGGGATAAgtctgaaaagaaattgacGACAGTCCATGAGCATCGCAAAGATCTCGCATGTAACAaatgcgaaagaaaatttaaacgaaaatcgaatttgctcgaacaccaaaagatagtacacgaaggtcagaaagattttgcatgcgacaagtgtgagaagaaatttggaaaaaagacGGATTTTATCAGGCACCAAAATGCAGTTCACGAAGGacgcaaagatttcgcttgtgacaagtgtgagaagaaattttcaattaaatcgaatttgcttttgcaccaaaagacagtccacgaaggtcgcaaagattacgcttgtgataagtgtgagaaggaattcaaacatcaatttactttgatcaaacaccaaaagacaatacacgaaggtcggaaagattacgcatgtgaaaattgcgagaagaaatttggacaaaaatcagatttgttgaggcaccgaaaaattgtacacgaaggtcgcaaagatttcgcatgcgacaattgcgagaaggtATTTGGAACAAAATCGCATCTCCTTTATCATCAAAGGACAtttcacgaaggtcgtaaagattactcatgtgacaaatgcgagaaaaaatttgcacaaaatTCGCATCTACGCgatcaccaaaaaacagtccacgaaggtcggaaagattttgcatgtgacgaGTGTGAgacgaaattttcaattaaatcgaatttgctcttacaccaaaggacagtccatgaaggtcgcaaagatttcggaTGTGAcgagtgtgaaaagaaatttacacaaaaaggaaattttctagctcacctaaagacagtacacgaaagtcgcaaagattacgtatgcgacaagtgcgggAAACAATTTGGATTTAATTGCGATTTGTTGAAGCCCCAAAAGACGgcacacgaaggtcggaaagattacgcatgtgacaattgcaagaaaaaatttggacataatcaAAACTTGCGCATTCACCAACAAGCAGTTCACgagggtcggaaagatttcgcatgcgacaaatgcggaaaaaaatttgcacaaaaatcgCATCTGTTAAAACACCAAAGAAcggtccatgaaggtcgtcaagattttgcatgcaacaattgcgagaaaaaattcagaaatcaATTTACTttgatcaaacaccaaaagacattACACGAAGGTCAGTAA
- Protein Sequence
- MQLTDAAVITKILNDHQVFEYRMDLVERLLKDASFKEIARNITVKNDLSYYKFLQLSPKEAAKEVTRKEFFDFVKSGSLERPLDICKTANFMCLSEKLLREFCFIWAPTSFYLLRQQTMPIETCEMTAELLMNQDLCNIILATEGPSLEGRRGNVEEDVNLILDLRKPRRIKPKVMRTAKRRRGRLGGYQKAVPEVRIWIKIGATRKYRRITNMWEVHRTSSWRGLRMDQLALSLCSSPSTPWPVFDHFPLGYAPGIKMDKCDKKSEEVVSKDDLSEHDIVVSDDKQYICDICQEAFTLESSMITHRDIIHSIQKNYSCDKCEKNFEFRSHLSRHQISVHKGCKDFASDRCDKKFLKKSSLFTHQKLVHKNGDDFTCNKCDRKFQNKSTLLKHKKIFHDVFKDYLCERCAKRFGNKQSLQLHIKTVHKNRSKDYVRDKSEKKLTTVHEHRKDLACNKCERKFKRKSNLLEHQKIVHEGQKDFACDKCEKKFGKKTDFIRHQNAVHEGRKDFACDKCEKKFSIKSNLLLHQKTVHEGRKDYACDKCEKEFKHQFTLIKHQKTIHEGRKDYACENCEKKFGQKSDLLRHRKIVHEGRKDFACDNCEKVFGTKSHLLYHQRTFHEGRKDYSCDKCEKKFAQNSHLRDHQKTVHEGRKDFACDECETKFSIKSNLLLHQRTVHEGRKDFGCDECEKKFTQKGNFLAHLKTVHESRKDYVCDKCGKQFGFNCDLLKPQKTAHEGRKDYACDNCKKKFGHNQNLRIHQQAVHEGRKDFACDKCGKKFAQKSHLLKHQRTVHEGRQDFACNNCEKKFRNQFTLIKHQKTLHEGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -