Basic Information

Insect: Trichogramma brassicae
Gene Symbol: -
Assembly: GCA_902806795.1
Location: CADCXV010001215.1:85210-91347[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0003 0.013 15.9 2.0 2 23 285 307 284 307 0.94

2 14 5.8e-06 0.00025 21.3 0.2 1 23 313 336 313 336 0.94

3 14 5e-06 0.00021 21.5 2.6 1 23 342 365 342 365 0.96

4 14 1.6e-07 6.9e-06 26.1 1.1 1 23 371 394 371 394 0.97

5 14 1e-05 0.00044 20.5 0.9 1 23 400 423 400 423 0.97

6 14 3.8e-06 0.00016 21.8 0.2 1 23 429 452 429 452 0.97

7 14 2.1e-07 8.8e-06 25.8 0.5 1 23 458 481 458 481 0.95

8 14 1.6e-06 6.8e-05 23.0 3.7 1 23 487 510 487 510 0.98

9 14 3.3e-06 0.00014 22.0 0.8 1 23 516 539 516 539 0.97

10 14 1.5e-05 0.00065 19.9 0.5 1 23 545 568 545 568 0.97

11 14 3.4e-05 0.0015 18.8 0.4 1 23 574 597 574 597 0.97

12 14 0.00053 0.023 15.1 0.1 1 23 603 626 603 626 0.94

13 14 3.3e-07 1.4e-05 25.2 1.2 1 23 632 655 632 655 0.95

14 14 3.1e-06 0.00013 22.1 0.7 1 21 661 681 661 682 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0003	0.013	15.9	2.0	2	23	285	307	284	307	0.94
2	14	5.8e-06	0.00025	21.3	0.2	1	23	313	336	313	336	0.94
3	14	5e-06	0.00021	21.5	2.6	1	23	342	365	342	365	0.96
4	14	1.6e-07	6.9e-06	26.1	1.1	1	23	371	394	371	394	0.97
5	14	1e-05	0.00044	20.5	0.9	1	23	400	423	400	423	0.97
6	14	3.8e-06	0.00016	21.8	0.2	1	23	429	452	429	452	0.97
7	14	2.1e-07	8.8e-06	25.8	0.5	1	23	458	481	458	481	0.95
8	14	1.6e-06	6.8e-05	23.0	3.7	1	23	487	510	487	510	0.98
9	14	3.3e-06	0.00014	22.0	0.8	1	23	516	539	516	539	0.97
10	14	1.5e-05	0.00065	19.9	0.5	1	23	545	568	545	568	0.97
11	14	3.4e-05	0.0015	18.8	0.4	1	23	574	597	574	597	0.97
12	14	0.00053	0.023	15.1	0.1	1	23	603	626	603	626	0.94
13	14	3.3e-07	1.4e-05	25.2	1.2	1	23	632	655	632	655	0.95
14	14	3.1e-06	0.00013	22.1	0.7	1	21	661	681	661	682	0.95

Sequence Information

Coding Sequence: ATGGAAAGCAGAAAGGATTTAGTTAGTATTAAAGAGGAGCCTCATGACAGTTGGGAAGATGTAGCCGACGTGAGTGTCGATCCTGGGGTCTCAGTAAAAACCGAAAACTCTGATGAATCATCGACGAATGAATCATCGgaaaaTTCAACCAATGACTCGTGTGTCGATCCTGAGGTCTCAGTCAAAACCGAAAACTCTGATGAATCATCGCCGAATGAATCATCGgaAAATTCAACCAATGACTGTATTTCGtcgcagaagaagaaagatgaggaaatttttatagattGCGAGAGCGTATTGGTAAAAACGGAACATAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGGAAGAAAATCCAGCAAATGACTTGAATGGGAAAAAgcttacaattttaattaaaaaaggattCGATTACGAGAAAAACCGTCAATTTACCATTGCAGAAGAATCGAGTTTAACAAGACAAATAGAAACGACGAATGAGGACGATGGATCACATGAATTAGAAATTTGCAAAGCTGAAAACCCTGAAGAATCATCTACGAATGAATCATCGgcAAATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGACAGATGAGGATATTTTTATAGATTGCGAGAGCGTATTGGTAAAAACGGAACATAAGCCCTCATTGACGACCATCTGCCAAGCTACGActgtaaaagaagaaaatccaGCAAATGACTTGAATGGGAAAAAgcttacaattttaattaaaaaaggattCGATTGTGATAGTAATCGTCAATTTACCAGAGAAGAAGCGATTTCAACGAGACAAATGAAAACGACCCACAAGGGCACGGGAccaattgaatgtaaaatttgtcataaatcattgaGTCACCCGGGTAAGCTTAAAAACCACGTTAATCAAGTACATAATAAGCACAAACCCTTCCACTGTGATATTTGTcccaaatcatttggacaaaatggTGCTCTCAAAAGGCACATACTGGCGGTACATAAACagatcaaacccttcgagtgtgatatttgtcacaaatcatttggacaaaaaaataatcttacatCTCACATCCATATAGTACACATGGGAAGCAAACtcttcgagtgtgatatttgtcacaaatcatttggacaaaatagTGACCTCAATAAGCACATCCGTCTAGTACATGAACacagcaaacccttcgagtgtgatacttgtcacaaattatttggacaaAATAGTGACCTTATTAGGCACATCCGACTAGTACATGAATacagcaaaccctttgagtgtgatatttgtcaaaaatcatttggagagaAAGGAAATCTCAATactcacataaattcagtacataaacggagcaaacccttcgagtgtgagatttgtcaaaaatcatttgcaaATAGAAGTAACTTCAACaggcacataaatgcagtacatgaacggagaaaacccttcgagtgtgatttttgtcacaaatcatttacGTACAAAGATAGCTTAAATACTCATATAAAAACTGTACATAATTGcagcaaacctttcgaatgtgagatttgtcacgaATCATTCGGGCAAAAAGGTACTCTCAATAGACACATAACTACAGTACATAaacggagcaaacccttcgagtgtgatatttgtcaaagatcatttggatataaacaACACCTTATCGTtcacataaatgtagtacataatcggagtaAACCCTTTgtgtgtgatatttgtcaaagACCATTTGGATATAAACAACACCTTATCAAtcacataaatgtagtacataatcggagtaaaccctttgagtgtgagatttgtcaaaaatcatttggaggaAAAGTTGTTCTCAAACGTCACGTCAATGCAGCACATGAACGGAgaaaacccttcgagtgtgatatttgtcacaaatcatttggacgaaaaggtAATCTCAAACGTCACctcaatgcagtacataaacagatcaaacccttcgagtgtgaggattgtcacaaatcatttggacgaaaaggtGATCTCGAAAGGCACATCCATATATCCCGTGTCCGCACGATACGATATCGATCAAGCTCGTCCACCGGCATATCATGTAATCGTTGGCTATGTAAGTTCGGAGCTTATGCTCCTTTTCGATTTCTCATATACTTAGTTCCGATCAGCGCGCAGCGTGCAATAAGCCGCGCGTATATCATCTGA
Protein Sequence: MESRKDLVSIKEEPHDSWEDVADVSVDPGVSVKTENSDESSTNESSENSTNDSCVDPEVSVKTENSDESSPNESSENSTNDCISSQKKKDEEIFIDCESVLVKTEHKPSLTTICQATVKEENPANDLNGKKLTILIKKGFDYEKNRQFTIAEESSLTRQIETTNEDDGSHELEICKAENPEESSTNESSANPTNDCISSQQKTDEDIFIDCESVLVKTEHKPSLTTICQATTVKEENPANDLNGKKLTILIKKGFDCDSNRQFTREEAISTRQMKTTHKGTGPIECKICHKSLSHPGKLKNHVNQVHNKHKPFHCDICPKSFGQNGALKRHILAVHKQIKPFECDICHKSFGQKNNLTSHIHIVHMGSKLFECDICHKSFGQNSDLNKHIRLVHEHSKPFECDTCHKLFGQNSDLIRHIRLVHEYSKPFECDICQKSFGEKGNLNTHINSVHKRSKPFECEICQKSFANRSNFNRHINAVHERRKPFECDFCHKSFTYKDSLNTHIKTVHNCSKPFECEICHESFGQKGTLNRHITTVHKRSKPFECDICQRSFGYKQHLIVHINVVHNRSKPFVCDICQRPFGYKQHLINHINVVHNRSKPFECEICQKSFGGKVVLKRHVNAAHERRKPFECDICHKSFGRKGNLKRHLNAVHKQIKPFECEDCHKSFGRKGDLERHIHISRVRTIRYRSSSSTGISCNRWLCKFGAYAPFRFLIYLVPISAQRAISRAYII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -