Tbra013416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
-
Assembly
GCA_902806795.1
Location
CADCXV010000813.1:246899-267805[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.6e-05 0.002 18.4 0.4 1 23 74 97 74 97 0.93
2 21 0.00012 0.0051 17.1 1.2 1 23 132 155 132 155 0.98
3 21 0.0045 0.19 12.2 0.3 1 23 161 184 161 184 0.95
4 21 1.7e-05 0.00071 19.8 0.8 1 23 190 213 190 213 0.98
5 21 7.3e-05 0.0031 17.8 2.6 1 23 219 242 219 242 0.98
6 21 1.6e-05 0.00069 19.9 0.5 1 23 248 271 248 271 0.97
7 21 0.00038 0.016 15.5 2.5 1 23 277 300 277 300 0.97
8 21 0.00072 0.031 14.7 4.2 1 23 306 329 306 329 0.97
9 21 0.00088 0.037 14.4 5.5 1 23 335 358 335 358 0.97
10 21 3.5e-06 0.00015 21.9 1.6 1 23 364 387 364 387 0.97
11 21 2.5e-06 0.00011 22.4 0.6 1 23 393 416 393 416 0.98
12 21 3.2e-05 0.0014 18.9 3.4 1 23 500 523 500 523 0.98
13 21 2.5e-06 0.00011 22.4 0.4 1 23 529 552 529 552 0.97
14 21 0.00023 0.0097 16.2 3.4 1 23 558 581 558 581 0.97
15 21 0.0001 0.0043 17.4 2.0 1 23 587 610 587 610 0.95
16 21 3.2e-06 0.00014 22.1 1.7 1 23 616 639 616 639 0.97
17 21 1.8e-06 7.5e-05 22.9 2.1 1 23 645 668 645 668 0.98
18 21 0.025 1.1 9.8 3.5 1 23 674 697 674 697 0.97
19 21 1.9e-05 0.00082 19.6 2.2 1 23 703 726 703 726 0.96
20 21 0.0022 0.095 13.1 0.6 5 23 736 755 735 755 0.95
21 21 0.041 1.7 9.1 0.2 7 23 767 784 761 784 0.87

Sequence Information

Coding Sequence
atggactgtcttttggtggaacAGCAAGGACTGTTTAtatccgaatttcttctcgcacctgtcacataCGAAAtgtttacgaccttcgtCTCGAAAGGAGATATTCAAATCGTTTatgattatattgtttacatCCTCGCGAGCAGCCacgaagaagatgaaaaaaaaatcgtaaaattcGCTCATTGTGCTTTCATGGCCTATAGgccatacatacattacttatgtgaaaagtgcggcAAGAGATTTGCAAGTAAACAGAGTTTACTCACACACGTGAAGGGAGTCCATGACGGTCGCAAAGATCACATATACGACAAATCGGAAAACAatcttagaaaaaaatcgcatttgttCATGCACACGACGACGGTCCAGAAGCATCgtaaagatttcacatgtgacCAGTGCGAGAATAAATTTGGAACTAAATCAAATATGTTGAAACACCAAAGGATCGTACACAAAGGTGGCAAAGATTatacatgcgacaagtgtgagaaggtatttggacaaaaatggattatgattcagcaccaaagattagtacacgaaggtcgcaaggattatgaatgtgacaaatgtgaaaagaaatttggggttcAAGGCCATTTGATAgttcaccaaaaaacagtccacgaacgCTGCAgagattacccatgcgacaagtgcgagaagaaatttggactaaaacatCAGTTGcttagacaccaaaaaacagtccacgaaggtcgccaagattacgcatgtgaaaaatgcgggaagaaattcggacaaagaTCTGATGcgttgaagcaccaaaagacagctcacgaaggtcgcaaagatttcgactgcgacaaatgcgaaaagaaatttggatataaatggCTTTTGCTGCACCACCAAAAGacgatacacgaaggtcgcaaagattatgcatgcgaccagtgcgagaagagATTTGGATCAAAACATCACTTACTCTACCATCGAAATACAGTCCATAACGATCGGAAAGAGTACGCgtgtgataagtgcgagaaaaaatttggacttaaaCACCATTTGAAACAACACCAAAAACGCATTCACGAAGATCGGAAAGATTATGCGTGTGacgaatgtgaaaagaaatttatatacaaatcgcatttgctcagacaccaagaaacagtccatgaaagtcgcaaagattacacatgtggcaagtgtgagaaaatttttgggaATATCAGCAATTTGAAAAGACATCAAAATACAGTGCATGAAGGTCTCAAAGATTATACATGCGACATTTGCGagcgacgaacgtgtaaaaacgtgagattttgcgccgcgcggggtactgcgcgcggaaacagctgccgcacggGCCGAAATGACACGTTTTTATACCACATGACCACAGTCCAGAAGcatcgtaaagatttcgcatatgatcaatgtgagaagaaatttggatacaaacCGCATTTGTTCATCTACCAAAAAACAGTATATGAAGgtcgaaaagttttttcctGTAACAAATGCGATAGTAAGTTTGGACGAAATTCgcatttgctcagacaccaaaatacagttcacgaggatcgcaaagatttcgtgTGCGACAGGTGTGAAAAGATATTTGGAAATAAATCGGATTTGATGAGACACCAAAGGATCGTACATAAAGGCtataaagattacgcatgtaacaaatgcgaaaagaaatttggacggaAATGTTATTTGCTtattcaccaaaaaacagtacacgaaggtcgcaaggatcacacatgcgacaaatgcgacaagaaatttggagtcAAGTATAAATTGATTAGGCATCAAAAcgcagtacacgaaggtcggaaagatttcgcatgtgacaagtgcgagaaaacattttcacaaaaacagaatttgctttaccaccaaaagacagttcatgagggtcgcaaagattatacatgcgataattgcgagaaaaaattcggacaaaaatcagatttgtttaagcaccaaaagacagtacacgaaggtcgcaaagattacacgtgcgacaagtgtgagaagaaatttggaatgaAACAGCATTTAATCTTCCACCAAAAGTCAGTCCACGACgatcggaaagattacgcgtgtgatgagtgcgagaaaaaatttaggcttcaacataatttaaaaaaacaccaAACAGTCATTCACGGAGATCGCAGAGTTTATGAccgcgacaaatgcgagaaaaaatttggacagaaaTCAAGTTTTCTCCGCCACCAAAATAtggtacacgaaggtcgtaaagattttgaatgcggCGAGtttgataagaaatttggactaaaatcgaACTTGTTTGTGCATCAAAGGACGACACACGAAGATAATTAA
Protein Sequence
MDCLLVEQQGLFISEFLLAPVTYEMFTTFVSKGDIQIVYDYIVYILASSHEEDEKKIVKFAHCAFMAYRPYIHYLCEKCGKRFASKQSLLTHVKGVHDGRKDHIYDKSENNLRKKSHLFMHTTTVQKHRKDFTCDQCENKFGTKSNMLKHQRIVHKGGKDYTCDKCEKVFGQKWIMIQHQRLVHEGRKDYECDKCEKKFGVQGHLIVHQKTVHERCRDYPCDKCEKKFGLKHQLLRHQKTVHEGRQDYACEKCGKKFGQRSDALKHQKTAHEGRKDFDCDKCEKKFGYKWLLLHHQKTIHEGRKDYACDQCEKRFGSKHHLLYHRNTVHNDRKEYACDKCEKKFGLKHHLKQHQKRIHEDRKDYACDECEKKFIYKSHLLRHQETVHESRKDYTCGKCEKIFGNISNLKRHQNTVHEGLKDYTCDICERRTCKNVRFCAARGTARGNSCRTGRNDTFLYHMTTVQKHRKDFAYDQCEKKFGYKPHLFIYQKTVYEGRKVFSCNKCDSKFGRNSHLLRHQNTVHEDRKDFVCDRCEKIFGNKSDLMRHQRIVHKGYKDYACNKCEKKFGRKCYLLIHQKTVHEGRKDHTCDKCDKKFGVKYKLIRHQNAVHEGRKDFACDKCEKTFSQKQNLLYHQKTVHEGRKDYTCDNCEKKFGQKSDLFKHQKTVHEGRKDYTCDKCEKKFGMKQHLIFHQKSVHDDRKDYACDECEKKFRLQHNLKKHQTVIHGDRRVYDRDKCEKKFGQKSSFLRHQNMVHEGRKDFECGEFDKKFGLKSNLFVHQRTTHEDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-