Tbra002070.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000902.1:6528-34632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2e-05 0.00085 19.6 1.2 1 23 15 38 15 38 0.98 2 23 4.2e-05 0.0018 18.6 1.5 1 23 44 67 44 67 0.98 3 23 0.00049 0.021 15.2 3.3 1 23 73 96 73 96 0.97 4 23 3.4e-06 0.00015 22.0 0.2 1 23 102 125 102 125 0.97 5 23 1.2e-05 0.0005 20.3 0.3 1 23 131 154 131 154 0.96 6 23 6e-06 0.00026 21.2 1.7 1 23 160 183 160 183 0.98 7 23 7.4e-05 0.0031 17.8 1.3 1 23 189 212 189 212 0.98 8 23 1.1e-06 4.6e-05 23.5 0.9 1 23 218 241 218 241 0.98 9 23 0.0013 0.056 13.8 1.8 1 23 247 270 247 270 0.97 10 23 0.024 1 9.9 2.1 1 23 279 302 279 302 0.97 11 23 0.00081 0.035 14.5 3.2 1 23 308 331 308 331 0.98 12 23 0.00014 0.006 16.9 1.3 1 23 337 360 337 360 0.96 13 23 0.0012 0.049 14.0 1.2 1 22 366 387 366 387 0.95 14 23 0.33 14 6.3 0.4 6 23 855 873 855 873 0.97 15 23 0.00042 0.018 15.4 2.6 1 23 923 946 923 946 0.96 16 23 7.4e-05 0.0032 17.8 1.8 1 23 952 975 952 975 0.95 17 23 0.00012 0.005 17.1 3.0 2 23 982 1004 981 1004 0.95 18 23 0.00056 0.024 15.0 0.6 1 23 1010 1033 1010 1033 0.96 19 23 0.0011 0.046 14.1 1.0 3 23 1070 1091 1069 1091 0.97 20 23 2.4e-06 0.0001 22.5 1.5 1 23 1097 1120 1097 1120 0.98 21 23 6.8e-06 0.00029 21.0 1.0 1 23 1126 1149 1126 1149 0.96 22 23 2.6e-05 0.0011 19.2 0.6 2 23 1156 1178 1155 1178 0.96 23 23 5.8 2.5e+02 2.4 0.9 1 10 1184 1193 1184 1197 0.91
Sequence Information
- Coding Sequence
- ATGTTGAGGCACCACAAGGCAGTCCATGAGGggcgcaaagattacacatgcgacaaatgcgataaGAAATATTGGGATCAAAGTACTTTGAACagacacataaaaacagtacacgaaggtcgcaaagattacgaatgtaataattgcgagaaaaaatttggaaaaaaatcgacattacttttgcatcaaaagacagtccatcaAAGACGTAAAgactatgcatgcgacaagtgcgaaaagaaatttggacataaagcCCATTTGCTTGGCCACCAAAAGACACTCCATGAAAATTGCAAGGaatttgcatgtgacaaatgtgaaaagccatttggacgaaaatcgaatttgctaatacacataaaaacagttcatgaaggtcgtaaagattatgcatgtgaccaatgcgaaaagaaattcggggaTCAAAGTAATTTAATCAATCACCGAAAGATAATCCACGAAGATCGTAAAAActacacatgcgacaagtgccagaagaaatttggatacaaagcggatttgttaaagcaccaaaggacagtacacgaaggtcgtaaagattttgaatgcgacaagtgcgagcaaaaatttggacaaaaaacgaCTTTGCTTCAacaccaaagaacagttcacgaaggtcgaaaaaattacgtatgtgaccaatgcgaaaagaaatttggacaaaagtcagatttgttaaagcaccaaaggacagtacacgaagggtgcaaagattatgcttgcgtcaagtgcgagaagaagtttggacgAAATCTGCATTTGCTTttacatcaaaagacagtccatgaagttcacgaaggtcgtaaagattacgcgtgcgacaaatgcgagaagaaatttggacataaatggCTTTTGCTTTTCCACCagaagacaatacacgaaggtcgaaaagattttgaatgcgacaagtgcgagaagaaatttggattaaaatgtaatttactccaacaccaaaaaacagttcacgaacTTTGCAatgatttcgcatgtgacaagtgcgagagtaAATTTAGGGATCAAACAGATTTGACTAAGCACCAAAAgtcagtacatgaaggtcgtaaagattacgcatgcgaaaattgtgagaagaaatttggatttaaacaaaatttgctcaaacaccaaaagAAGCAAATTTTAGGAGATTATGAATTAAAAGAGAGGATAGATTCGTCACGGCCTCGAGCGATCGTTGGCGTTCTGGCGTCTACGCTCGTCGGCCGTCAGCAGAGTCGCTACGAAGCCCAGGAGCGCGAGGCCGAGAAACAGGCAGTAAGCCGCCACGTCGCCGTAGCGAACGATGAGCCTGTCGCTGCAGGTGATGGTGAAAACGGCGAAGACCTGATTCATCAGGTTGAGCATCGACACGCAGAAGATTTCCGGCTCGGGGTAGGTGACTTCCGCGCAGGTGTCGAAACTCGTCGTCTGGTAGCTGTGCATGAAAATCCTGccgtgcgcgcgaTGCATCGGTCGAACCTTGAAGTGCGCCAAAACGAGAACATTGACGGACGAGTGAAAAGTAACGATGAGGCCGCCGTTGATGCCGTGAGCTATCCAGAGCAGGACGTAATTTCGATTCCTCAGCAGTCGCGCGAAAGATTTCCAAAAGACGAAGCGCTTGCCCTTGAGCCGCAACTGCAGAGCTCTGGACTTGCTCGGTGGCAGTTTGGGCTCGTTCTGAAAAACTTGGAATTCGTGGACGATCGCGTCACCCGGATACAATCTCGTGGCTGCAggaaattaaacaaaaaaaaaaccaaactcaCACACGAGGATGAGTATCATGACCAGCGTACAGTAGGCGGCCAGCGGCAGGCCCAGCGACTTCATCTGCGCCTCGACCACGCGCTGATCCTCGTTGACCCTCACGATCATGGGTGTGAGCAGGGAGAAGGTCGAGATGCCGACCACGAGACCGGCGTATGCGATGGCCGTGGCCGTGTTGATCTGGCTCGGGCCGAACCAGTGGGCCGCCAGACTCGCGGGCATCGACAGGGTCAGCATCTGCCAGAAGCCCACGAGGCTCTGGCCGAGTATGGTCCAGCCGTAGCCGGCCGGTCTGGTGCCGAAGTACTTGATCCAGGCGCCGAGGGCCTGGACGCTCGAGGCCAGTATCATGACGCTGCGCATGCCCCAGCGATGCTCCACGTACGAGATCGGATAGACGAGGAAGGGCGCGGCCAGACTGTACACCATCGTCGTGGATTTGATCGCCAGGCTCGAGACTTGGAAAAATCTGCGCGTagagttattttttcaagatcCTTTATAATCGCGTTTCGATCGAACACGAGCTACGAGTCGATCTCGAAGCGAACGAGGGGATCGACGaggaaacaaaaatttaacgagTGCCCGCGgccctcatggactgttttttggtgtctgagcaaatgcgatttgtgtccaaatttcttctcacacatgttacatgtaaaatctttgcgaccctcatggactacTTTTGTGTGCAAGAaTAGGCAAACGAGGCGATCCGCAGATCGGCGAATAAAAACGTCGCTTTGGAAACCGtgcgccaagaggTTCGGGAATAAACAAAGTTTGCTCTTACActtaaagacagtacacgacggtcgtaaagattacgcaacACACAAGTGCGAGAAGGAATTTGAACGAAAAACTGATTTCTTCTTGTCCCAAAAGACAgagTCATTTGCACTAGAATCAAGATTGATATctcaccgagacacaattcacaatgatcgaaaagattacgcatgcgacaagtgcgtaaagaaatttgagtttcgaagtcatttgagtagacaccaaatatcagaacacaaaagccgcaaagattttgcatgcaaccagtgcgagaagaaatttgtgaaaaaatcgagtttattttcgcaccaaaaattagtacacaagaATCGCGAAGATTTGAcgtgtaacaagtgcgagaagaaatttgaaaataaatcaactttactcaagcacaaaaaaatattccacgaagttttcaaagattatttatgtgaaagaTGCGCGAAAAGATTTGGGAATAATCGTAATTTGCTCTCGCACATAAAAACTGTACACGACGAtcgcaaaaatttcgcatgtaaCGAGGGCGAGgagatatttacaaaaaaatcgccTTTTCTCTTCCACCAAGAGACAGCACACGACGGTCTAAGAGATCAAGcttgcaacaagtgcgaaaaaaaattcggggATCAAAGTAATTCAATTCGGCACCAGAAGACGGTTCATGAAAAtcgaaaagattacgaatgcgacaagtgcgagaaaaaatttgcacaaaaatcTGATTTGtttttgcaccaaaaaacatTACATGAAGCtcggaaagatttcacatgtgatacatgtgggaagaaatttggggatcgaAGAAATTTGAACACACATCAAAAGGCcatccacgagggtcgcaaaaatgtttcatgcgattattgcgaaaaaaaattcgtacaaAAACGTGATTTACTTATGCACATGAAATCAGTCCATGaggatcgcaaagattacgcatgcgataagtgcgaaaagaaatttggggctaaaaAATGTACGGTGACGGCCAGCTTCACGAGCGCATCCGGCCTAGTCGAGAAGGTGCCCTACGTATTCCTGCCCCAGTACGGCCAGATCATCTATCCCCATGCTGAAATAACCATTCCAGGTGAGTATATATTAAAGCACGACCTTCGTCATCTCGGCATCGATTCGTCGTAA
- Protein Sequence
- MLRHHKAVHEGRKDYTCDKCDKKYWDQSTLNRHIKTVHEGRKDYECNNCEKKFGKKSTLLLHQKTVHQRRKDYACDKCEKKFGHKAHLLGHQKTLHENCKEFACDKCEKPFGRKSNLLIHIKTVHEGRKDYACDQCEKKFGDQSNLINHRKIIHEDRKNYTCDKCQKKFGYKADLLKHQRTVHEGRKDFECDKCEQKFGQKTTLLQHQRTVHEGRKNYVCDQCEKKFGQKSDLLKHQRTVHEGCKDYACVKCEKKFGRNLHLLLHQKTVHEVHEGRKDYACDKCEKKFGHKWLLLFHQKTIHEGRKDFECDKCEKKFGLKCNLLQHQKTVHELCNDFACDKCESKFRDQTDLTKHQKSVHEGRKDYACENCEKKFGFKQNLLKHQKKQILGDYELKERIDSSRPRAIVGVLASTLVGRQQSRYEAQEREAEKQAVSRHVAVANDEPVAAGDGENGEDLIHQVEHRHAEDFRLGVGDFRAGVETRRLVAVHENPAVRAMHRSNLEVRQNENIDGRVKSNDEAAVDAVSYPEQDVISIPQQSRERFPKDEALALEPQLQSSGLARWQFGLVLKNLEFVDDRVTRIQSRGCRKLNKKKTKLTHEDEYHDQRTVGGQRQAQRLHLRLDHALILVDPHDHGCEQGEGRDADHETGVCDGRGRVDLARAEPVGRQTRGHRQGQHLPEAHEALAEYGPAVAGRSGAEVLDPGAEGLDARGQYHDAAHAPAMLHVRDRIDEEGRGQTVHHRRGFDRQARDLEKSARRVIFSRSFIIAFRSNTSYESISKRTRGSTRKQKFNECPRPSWTVFWCLSKCDLCPNFFSHMLHVKSLRPSWTTFVCKNRQTRRSADRRIKTSLWKPCAKRFGNKQSLLLHLKTVHDGRKDYATHKCEKEFERKTDFFLSQKTESFALESRLISHRDTIHNDRKDYACDKCVKKFEFRSHLSRHQISEHKSRKDFACNQCEKKFVKKSSLFSHQKLVHKNREDLTCNKCEKKFENKSTLLKHKKIFHEVFKDYLCERCAKRFGNNRNLLSHIKTVHDDRKNFACNEGEEIFTKKSPFLFHQETAHDGLRDQACNKCEKKFGDQSNSIRHQKTVHENRKDYECDKCEKKFAQKSDLFLHQKTLHEARKDFTCDTCGKKFGDRRNLNTHQKAIHEGRKNVSCDYCEKKFVQKRDLLMHMKSVHEDRKDYACDKCEKKFGAKKCTVTASFTSASGLVEKVPYVFLPQYGQIIYPHAEITIPGEYILKHDLRHLGIDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -