Tbra004022.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000480.1:7202-35405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0073 0.31 11.5 3.1 5 23 120 139 113 139 0.91 2 23 5e-07 2.1e-05 24.6 2.1 1 23 145 168 145 168 0.98 3 23 0.00012 0.005 17.1 1.0 1 23 174 197 174 197 0.97 4 23 2.6 1.1e+02 3.5 0.4 8 23 210 226 203 226 0.90 5 23 0.14 6.2 7.4 0.7 1 23 232 255 232 255 0.95 6 23 9.1e-06 0.00039 20.6 0.7 1 23 261 284 261 284 0.97 7 23 0.00029 0.013 15.9 1.5 1 23 290 313 290 313 0.97 8 23 0.0029 0.12 12.7 0.8 1 23 319 342 319 342 0.95 9 23 1.7e-05 0.00071 19.8 0.3 1 23 348 371 348 371 0.97 10 23 0.001 0.043 14.2 0.1 1 23 377 400 377 400 0.93 11 23 0.0011 0.047 14.1 5.1 1 23 406 429 406 429 0.97 12 23 0.0096 0.41 11.1 0.8 1 23 433 456 433 456 0.95 13 23 0.0018 0.076 13.4 2.7 1 23 462 485 462 485 0.96 14 23 1.2e-05 0.00052 20.2 2.1 1 23 491 514 491 514 0.96 15 23 0.00043 0.018 15.4 5.1 1 23 520 543 520 543 0.97 16 23 5.4e-06 0.00023 21.3 2.0 1 23 549 572 549 572 0.98 17 23 0.00072 0.031 14.7 0.5 1 23 578 601 578 601 0.98 18 23 0.00012 0.0052 17.1 5.0 1 23 607 630 607 630 0.97 19 23 2.3e-07 9.8e-06 25.7 3.0 1 23 636 659 636 659 0.98 20 23 1.5e-06 6.5e-05 23.1 1.2 1 23 665 688 665 688 0.97 21 23 1.5e-06 6.5e-05 23.1 1.2 1 23 694 717 694 717 0.97 22 23 3.7e-06 0.00016 21.9 1.0 1 23 723 746 723 746 0.96 23 23 0.0017 0.074 13.5 0.7 1 23 752 775 752 775 0.96
Sequence Information
- Coding Sequence
- atgagttttgatactttttcagcgactttgAAATCGAGCAATTAtccgtatttacgagaaaacatgatttttcgtcctctaaatcacaaaaCTACCGCCGCTAGACGCCTGATGAAATTAAacgaaaggaaagaaagaggcTCTACGGCTGGCAGCGGCTTTAAATTCCGCAGATGCGGGATACAACAGCTCATAGCTGTAAAgtTTGGAAATAAGAAAAGGTTGTTAATGCACATAACGAGGGTCCACGAGGGTCCAGAAGATTTTGCAAGTGAcgcgagaaaattttatagtaaatcgaatttgctcttTCAACgtaaaacagtacacgaaggttgtGAATATTACGCacgcgacaagtgcgaaaaaaaatttggacacagATCGCATTTGTTCTCCCATCAAAAGAttgtccacgaaggtcgcaaagattacacatgtaacaagtgcgacaagaaatttggacaaaaatcgaatttatctgagcatcaaaagacagtccacgaagatcggaaagatttcgcatgcgacaattgcacaaagagatttggaaataaacaatATTTGCGCATACATGtgaagacagtccacgagggtcgcaaagattacgcatgtaacaagtacgaaaaaaaatttggatataaaaggCTTTTATtctaccaccaaaagacagcccatgaaggtcgtaaagattttgcttgcgataaatgtgagaagaaatttggactaaagtGGATTATGACtcagcaccaaaagacagttcatgagggtcacaaagattacgcatgcgacaaatgcgagaagaaatttggacgaaaatcggaTTTGTTGAATCACCAAAgcacagtccacgagggtcgcaaagatttcgcatgcgacaagtgcaataagaaatttggatctAAACAGTAtatgcttttgcaccaaaggacagtccatgaagatGTGaaggattacgcatgtgataaatgcgagaaaaaattcggacaaagATCTTCTTTGCTTttccaccaaaagatagtccacgaaggtcgcaaagactacgcatgtgacatatgcgagaagaaatttggggaacgaAGCAATTTGATgatgcaccaaaaaacagtacatgacGGTTacaaagattacccatgtgaaaaatgcgagaagaaatttgggctaAAAGGAAATTTGCTCATTCACATAACGGCAGTCCATCagggtcggaaagattacgcatgcgacaaatgcgaaaagaaatttggacataaatgtAATATGCTCAGGCATCAAAATACAGTGCATGAAGGtgattacttatgtgaaaagtgcgccaagagatttggaaataaaaagagGTTGCTAATGCATATAACGACAGTCCATGAGgattacaaaaatttcgcatgcgacaagtgcgaggagaaatttagaaataaatcgcatttgctaTTCCATCTACAGACTGAACATACAACTTtaaaagattacacatgcgacgactgtgggaaaaaattcagagataaatttaattttttcttgcacgtAACAAGAGTTCACGAgggccgcaaagattacgcttgccacgagtgtgaaaaaaattttggatatAAAGTTCATCTGCACACGCAtataaagacagtccacgaacgtcggaaagattactcatgtgacaattgcgagaagaaattcggacaaaaatcgactttgttCAGACACCAacaaacagtccatgaaggtcgcaaagattactcgTGCAATAggtgcgacaagaaatttggagatcTATCGATTTTGCTCGATCACCAAAGaacagtgcacgaaggtcgcaaagattatgcatgcaacaaatgtgaaaagaaatttggacacagATCGCATTTGTTCTCCCATcaaaagatagtccacgaaggtcgcaaagattacacatgtaacaagtgcgacaagaaatttggacaaaaatcgaatttatctaagcatcaaaagacagtccacgaagatcggcaagattttgcttgtgacaaatgccagaagaaatttacggaacgaggcaatttgatcaaacaccaaagaacagtccatgaagatCGGCAAGATTTTGCTTGTGACAAATGCCAGAAGAAATTTACGGAACGAGGcaatttgatcaaacaccaaagaacagtccatgaaggtcgacAAGATTTTGCTTGTGACAAATGCCAGAAGAAATTTGCGGAGCGAAGCAATTTGACCAAACACCAAATAACGGTAcatgatggtcgcaaagattttgcatgcgacaagtgcgagaaaaaatttggacgaagaCAAAATTGGCTTCTCCACGAAAAAACAGTCCacaaagAGCTTCCACGACGTCACAATCAAGTTTATATGAGCATACGTGCGTACAACGTTATATATCTGCAGTCAGTCAAAGGATACCGagttaaaagttatttcgtCTCTCGTGTTGCCTTCGCGCGGGCGCGATCTATTTTATcgttactgttttttatgtaccatatacactgctgctgctgctgctgctcgggcGACACCGGGGCTATTACGTGGAAAGTCGCGCGCTCGACTGGTCGCGCACCAGCACTGGTACTGGAGAACGGGAGGCGCGATCGAGCTTTGCGTGCGCGCTTATTGTACAGAGACTCTCCGTATCTCGTTCCGTACGAGGCAGACAACGCGCTGGTCGCGCgccaactgctgctgctttgctaCCCTTTTGCCATggagagcagcagtagcagcagtagcatcagccgcgcagcagcagcagctatagcgccagagagagagatatgccCTTCCTCCGCCTCCACCGCCTCCTCCTACTGCAGATGCAACGCTGTTTAA
- Protein Sequence
- MSFDTFSATLKSSNYPYLRENMIFRPLNHKTTAARRLMKLNERKERGSTAGSGFKFRRCGIQQLIAVKFGNKKRLLMHITRVHEGPEDFASDARKFYSKSNLLFQRKTVHEGCEYYARDKCEKKFGHRSHLFSHQKIVHEGRKDYTCNKCDKKFGQKSNLSEHQKTVHEDRKDFACDNCTKRFGNKQYLRIHVKTVHEGRKDYACNKYEKKFGYKRLLFYHQKTAHEGRKDFACDKCEKKFGLKWIMTQHQKTVHEGHKDYACDKCEKKFGRKSDLLNHQSTVHEGRKDFACDKCNKKFGSKQYMLLHQRTVHEDVKDYACDKCEKKFGQRSSLLFHQKIVHEGRKDYACDICEKKFGERSNLMMHQKTVHDGYKDYPCEKCEKKFGLKGNLLIHITAVHQGRKDYACDKCEKKFGHKCNMLRHQNTVHEGDYLCEKCAKRFGNKKRLLMHITTVHEDYKNFACDKCEEKFRNKSHLLFHLQTEHTTLKDYTCDDCGKKFRDKFNFFLHVTRVHEGRKDYACHECEKNFGYKVHLHTHIKTVHERRKDYSCDNCEKKFGQKSTLFRHQQTVHEGRKDYSCNRCDKKFGDLSILLDHQRTVHEGRKDYACNKCEKKFGHRSHLFSHQKIVHEGRKDYTCNKCDKKFGQKSNLSKHQKTVHEDRQDFACDKCQKKFTERGNLIKHQRTVHEDRQDFACDKCQKKFTERGNLIKHQRTVHEGRQDFACDKCQKKFAERSNLTKHQITVHDGRKDFACDKCEKKFGRRQNWLLHEKTVHKELPRRHNQVYMSIRAYNVIYLQSVKGYRVKSYFVSRVAFARARSILSLLFFMYHIHCCCCCCSGDTGAITWKVARSTGRAPALVLENGRRDRALRARLLYRDSPYLVPYEADNALVARQLLLLCYPFAMESSSSSSSISRAAAAAIAPEREICPSSASTASSYCRCNAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -