Tbra014852.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000783.1:242921-245356[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.1 4.2 7.9 0.5 1 23 30 53 30 53 0.89 2 24 0.00011 0.0046 17.3 2.0 1 23 59 82 59 82 0.96 3 24 3.8 1.6e+02 2.9 0.1 5 21 92 108 87 109 0.93 4 24 0.0013 0.057 13.8 1.1 1 23 117 140 117 140 0.95 5 24 3.2e-05 0.0014 18.9 2.1 1 23 146 169 146 169 0.94 6 24 0.00014 0.0061 16.9 0.6 1 23 175 198 175 198 0.97 7 24 5.3e-06 0.00023 21.4 0.3 1 23 204 227 204 227 0.97 8 24 0.0013 0.056 13.8 2.3 1 23 233 256 233 256 0.96 9 24 0.12 5 7.7 0.4 1 16 262 277 262 278 0.91 10 24 8.2 3.5e+02 1.9 0.3 14 23 281 291 279 291 0.90 11 24 4.1e-06 0.00018 21.7 1.1 1 23 297 320 297 320 0.97 12 24 0.0039 0.16 12.4 0.8 1 23 326 349 326 349 0.97 13 24 6.6e-06 0.00028 21.1 2.1 1 23 355 378 355 378 0.98 14 24 0.00021 0.009 16.3 0.9 1 23 384 407 384 407 0.98 15 24 1.4e-05 0.00058 20.1 0.7 1 23 413 436 413 436 0.98 16 24 0.00025 0.01 16.1 1.1 1 23 442 465 442 465 0.96 17 24 1.2e-05 0.00051 20.3 3.6 1 23 471 494 471 494 0.98 18 24 5.5e-06 0.00024 21.3 2.6 1 23 500 523 500 523 0.97 19 24 6.8e-06 0.00029 21.0 0.6 1 23 529 552 529 552 0.98 20 24 1.4e-05 0.00061 20.0 1.7 1 23 558 581 558 581 0.97 21 24 0.00017 0.0073 16.6 0.6 1 23 587 610 587 610 0.97 22 24 0.011 0.45 11.0 2.2 1 23 616 639 616 639 0.97 23 24 7.8e-05 0.0033 17.7 4.1 1 23 645 668 645 668 0.97 24 24 3.2e-06 0.00013 22.1 4.2 1 23 674 697 674 697 0.98
Sequence Information
- Coding Sequence
- atggataaaatgcAGAAGAAATCGGAAGAAATTGTCTCAATAAATAAGCCAAGTGAACACGACGTTGTTGCTTCAAACgacaaaaagtacatttgtgatatttgtcaggagatatttacattaaaatcaaGCATGATATTTCACCGATTCACAGTTCAcactgaacaaaaaaaatacgcatgtggcaagtgcgaaaagaaatttgtgaatcAATCGTGTTTGATTATGCACCAAAAACTAATGCATAGAAATTGCGCAGATTTCATGATCAAAAAGTGCAAtcaaaacattgaaaataaatcaactttacttgaGCACCAAAAACTATCCAACAAAGTTTCCGCAAATTACTTATGTGCaatgtgcgcgaagagatttgatacTGTACATAGTTTGCTCTCGCACAtgaagacagtccacgaaagtcgcaaaaattacccatgtgataagtgcgataagaaattttcacataaagcgagtttgctctaccaccaaacGTTAGTACACGAAGTTCGAAAATAccacacatgcgacaagtgtgagaagataTTTGTGACTCAAGGCGTTTTGAATACGCACCTAGaaacagtccatgaaaatcgaaaaaagtattcatGCGAagattgcgagaaaaaatttgaaaatgaatcaaatttaCTCGAACACAGAAAAGTagtccacgaagttttcagagattatttatgtgaaatgtgtttgaaacaatttaatacTACacatagtttgctcttgcacatgaagacagtccacgaaggtcgcaaagactacgaatgtgataattgcgagaaaaaattcggacataaACCGTCTTTGCTGTTCCTCCAAAATTTGTTCCGCCACcgaaaaacagtccatgaaggtcgtaaagattttgcatgcgacgaCTGCGATAAGACATTTGCACTAAAACAGCATTTGCTGGAccaccaaagaacagttcatgagggtcgcaaagattatgcatgcgacaaatgcgaaaagaaatttggacaaataaGTTATTTGCTTttccaccaaaggacagtccacgaaggtcgcagagactACGAAtgtgataattgcgagaaaaagttCGGAAAAAGATCGCATTTACTCGTTCACCAAcgaacagttcatgaaggtcgcaaggattatgtatgcgacagatgcgagaacaaatttggaaataaatcagatatgttgaagcaccaaagaaCCGTACATGAAGGAcgaaaagattactcatgtggcaattgcgagaagaaattcggacgaAAAGCTGATTTgttcgtgcaccaaaaaacagtccatgaaggtcgcaaagattttgcatgtgataagtgcgagaagaaatttgtacgaaaattggattttttaaatcaccaaagtacagtccacgagggtcgcaaaggtTTCACATGCGACAGATGTGATAAGACATTTGGACACGTATCGAATTTGTTCCGCCACcgaaagacagtccatgaaggtcgtaaagattttgcatgcgacgaCTGCGATAAGACATTTGCACTAAAACATCATTTGCTGgaccaccaaaggacagtacatgaaggacgaaaagattacgtatgtggcaaatgcgagaagaaattcggacgaAAAGCTGATTTgttcgtgcaccaaaaaacagtccacgaaggtcgcaaagattttgcatgtgacaattgcgagaagaaatttggggataaaCGATATTTGAGAaaacatcaaaagacagttcatgaaggtcaaaaagattatgcatgcgatatGTGCGAGAacaaatttggaaataaatcaGATATGTTGaagcatcaaaggacagtacacgatagtcggaaagattatacatgcgacaagtgcaaaaaaaaatttgcactaAAACTGAGTCTGCTCttccaccaaaggacagtccatgaaggtcgtaaagattttgcatgcgacaagtgcgagaagaaatttggacatagaTCGAATTTGCACGGTCACCAAcgaacagttcatgaaggtcgcaaggattacacatgcgacaagtgcgagaaaaaatttggacataaatcaaatttgctcagacaccaaaaaagaATTCACTAA
- Protein Sequence
- MDKMQKKSEEIVSINKPSEHDVVASNDKKYICDICQEIFTLKSSMIFHRFTVHTEQKKYACGKCEKKFVNQSCLIMHQKLMHRNCADFMIKKCNQNIENKSTLLEHQKLSNKVSANYLCAMCAKRFDTVHSLLSHMKTVHESRKNYPCDKCDKKFSHKASLLYHQTLVHEVRKYHTCDKCEKIFVTQGVLNTHLETVHENRKKYSCEDCEKKFENESNLLEHRKVVHEVFRDYLCEMCLKQFNTTHSLLLHMKTVHEGRKDYECDNCEKKFGHKPSLLFLQNLFRHRKTVHEGRKDFACDDCDKTFALKQHLLDHQRTVHEGRKDYACDKCEKKFGQISYLLFHQRTVHEGRRDYECDNCEKKFGKRSHLLVHQRTVHEGRKDYVCDRCENKFGNKSDMLKHQRTVHEGRKDYSCGNCEKKFGRKADLFVHQKTVHEGRKDFACDKCEKKFVRKLDFLNHQSTVHEGRKGFTCDRCDKTFGHVSNLFRHRKTVHEGRKDFACDDCDKTFALKHHLLDHQRTVHEGRKDYVCGKCEKKFGRKADLFVHQKTVHEGRKDFACDNCEKKFGDKRYLRKHQKTVHEGQKDYACDMCENKFGNKSDMLKHQRTVHDSRKDYTCDKCKKKFALKLSLLFHQRTVHEGRKDFACDKCEKKFGHRSNLHGHQRTVHEGRKDYTCDKCEKKFGHKSNLLRHQKRIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -