Tbra006892.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000798.1:7981-17891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00046 0.02 15.3 0.5 3 23 81 102 79 102 0.96 2 24 0.017 0.74 10.3 4.8 1 23 108 131 108 131 0.97 3 24 6.5e-05 0.0028 18.0 1.3 1 23 137 160 137 160 0.97 4 24 2.8e-05 0.0012 19.1 4.3 1 23 166 189 166 189 0.96 5 24 0.00033 0.014 15.7 1.1 1 23 195 218 195 218 0.97 6 24 3.9e-05 0.0017 18.7 2.4 1 23 224 247 224 247 0.98 7 24 0.00039 0.017 15.5 0.9 3 23 255 276 253 276 0.97 8 24 6.6e-05 0.0028 17.9 4.1 1 23 282 305 282 305 0.96 9 24 0.0008 0.034 14.5 0.3 3 23 313 334 311 334 0.96 10 24 0.00096 0.041 14.3 2.2 1 23 391 414 391 414 0.95 11 24 0.0036 0.15 12.5 3.8 1 23 420 443 420 443 0.96 12 24 0.08 3.4 8.2 1.0 1 23 449 472 449 472 0.95 13 24 0.024 1 9.9 0.3 5 23 482 501 481 501 0.95 14 24 4.4e-07 1.9e-05 24.8 0.9 1 23 507 530 507 530 0.98 15 24 7.9e-06 0.00034 20.8 2.6 1 23 536 559 536 559 0.97 16 24 0.00021 0.0088 16.4 2.3 1 23 565 588 565 588 0.98 17 24 7.8e-06 0.00033 20.8 0.8 1 23 594 617 594 617 0.97 18 24 3.8e-05 0.0016 18.7 1.1 1 23 623 646 623 646 0.95 19 24 4.2e-06 0.00018 21.7 0.2 1 23 652 675 652 675 0.97 20 24 4.4e-05 0.0019 18.5 2.3 1 23 681 704 681 704 0.98 21 24 5e-05 0.0021 18.3 1.4 1 23 710 733 710 733 0.97 22 24 4.2e-06 0.00018 21.7 0.5 1 23 739 762 739 762 0.97 23 24 7.8e-05 0.0033 17.7 0.7 1 23 768 791 768 791 0.97 24 24 0.012 0.52 10.8 6.6 1 23 797 820 797 820 0.96
Sequence Information
- Coding Sequence
- atggaaaattcagtAAATAGAATTCCCGCGATGCACCCCCCGCTTGCACAAAAGGGGCCGCCGCGACGCGTTGAATTACGAGGGCTTTTCGATTCAAACGCGGCGAGAGTGCATGCGGCCTGGCCTGGCCTGGCAAAAGTTTGCGTGTGCTCGAATTGCAAGCAACCGTGGCAGTCAGGCCACAGCAGGCGGTCTACGGCAGCAAGCCCCAAACttcaccaaggtcggaaagattacggatgtagcacgtgcgagaagaaatttggacaaaaaatagatttgttgaagcaccaaaaagtagtccacgaaagtcgcaaagatttcgcatgtgacaagtgtgagaagaaattcggatgtaaatcgcatttgctcttgcaccagaagacagtccatgagggtcgcaaagatttcgcatgtgacaagtgtgagaagaaatttacagaaaaaaagggtTTGTTTATACACATAAAGACGACACACTATGGGcacaaagatttcgcatgtgacaagtgcgaaaagaaatttggacataaatcacatttgctTCGCCATCAAAAGATAGTTCAccaaggtcggaaagattttgcttgcgaCAGGTGTGAAAAGAAGTTCGGAGTAAAATCATATTTAGTCAGGCACaaaaagacaatacacgaacgtcgcaaagattatacTTGCGatatatgcgaaaaaaaatttggagaaaaacaGAATTTGCTTCGCCATCATAAGACAATTCAccaaggtcggaaagattacggatgtgacatgtgcgagaagaaattcggtcaaaaaccgcatttgctcgatcatcaaaatacagtacataaagATCGGAGAGATTTCGCTTGTGacgaatgtgaaaagaaatttggacataaatcacattttcTTCGCCATCAAAAGATAGTTCAccaaggtcggaaagattacggatgtggcacgtgcgagaagaaatttggacaaaaaatagatttgttgaagcaccaaaaagtagtccacgaaagtcgcaaagattacgcatgcgacaagtgccgcaaagattttgcatgcgaccagttcgagaagaaatttgtgaaaaaaccAAGTTGGTTtgcgcaccaaaaattagttcacGAAGATATTGtgtgtaacaaacaccaaatatcagtacacaaagaccgtaaagatttcgcatgcgataggtgtgagaaaaaatttgtgaaaaaatcaagtttctATACGCACCAAAAGTTAGTTCACAAAGATCACGAAAATTTCACTTGCaataagtgcgagaggaaatttgaaaataagttAACTTTATttaagcacaacaaaatattccacgaagttttcaaggattacttatgtgaaaggtgtgcgaagagatttggaaataaacgaagtttaatttttcacttgaagacaatccatgaaggtcgtagaGATTTCACacgcgacaagtgcgagaagaaatttgaagaaacatcgaaattgattagacaccaaacgacagtacacgaagatcAGAACGATTatgtatgcgacaagtgcgaaaaaaaatttggagatcgaagcaatttgattaaacaccaaaagacagttcatgaaggtcgcaaagattacgcatgcgacaaatgtgagaagaaattcgaacaaaaatcgcatttactCTTACACCAGAAGACAGTACATGAGGGTCGCCAAGATTtcgtatgtgacaagtgcgagaagaagtttggtCATAAACAGCAATTACTCGgtcatcaaaagacagtacacgaaggtcggaaagactATGCATGtaacaattgcgagaagaaatttggaagtacATCAGATttattgaagcaccaaaggacagtgcacgaaggtcggagagattacttatgtgacaattgcgggaagaaatttggacacaagtggaatttacttttacatcaaaaggtagtacacgaaggtcggaaagattacgcatgtgacatatgcgaaaagaaatttggacaacaATCAAATTTGCTAACCCACTTAAAGATAGTTCAcaaaagtcgcaaagatttcccatgcgacaagtgcgtgaagaaatttggacaaaaatcgcatttactCTTACACCAGAAGACAGTCCATAATGGTCGCAAGGATttcgtatgcgacaagtgcgagaagaaatttggacacaagtGGAACTTACTTTTACATCAAAAggtagtacacgaaggtcggaaagattacgcatgtgacatatgcgaaaagaaatttggaagtacATCAGATTTGtcgaagcaccaaaggacagtgcacgaaggtcggaaagatttcgcatgcgagaaatgcgagaaaaaatttggattaaaatataatttgctcgttcaccaaaagacagtacacgatggtcgcaaagatttcgcatgcgataagtgcaacaagaaattcgaaaaaaaatcgcatttactTTGCCATCAAAAGAGAGCTCACAAAATTCGCGTAGATTTTGTatga
- Protein Sequence
- MENSVNRIPAMHPPLAQKGPPRRVELRGLFDSNAARVHAAWPGLAKVCVCSNCKQPWQSGHSRRSTAASPKLHQGRKDYGCSTCEKKFGQKIDLLKHQKVVHESRKDFACDKCEKKFGCKSHLLLHQKTVHEGRKDFACDKCEKKFTEKKGLFIHIKTTHYGHKDFACDKCEKKFGHKSHLLRHQKIVHQGRKDFACDRCEKKFGVKSYLVRHKKTIHERRKDYTCDICEKKFGEKQNLLRHHKTIHQGRKDYGCDMCEKKFGQKPHLLDHQNTVHKDRRDFACDECEKKFGHKSHFLRHQKIVHQGRKDYGCGTCEKKFGQKIDLLKHQKVVHESRKDYACDKCRKDFACDQFEKKFVKKPSWFAHQKLVHEDIVCNKHQISVHKDRKDFACDRCEKKFVKKSSFYTHQKLVHKDHENFTCNKCERKFENKLTLFKHNKIFHEVFKDYLCERCAKRFGNKRSLIFHLKTIHEGRRDFTRDKCEKKFEETSKLIRHQTTVHEDQNDYVCDKCEKKFGDRSNLIKHQKTVHEGRKDYACDKCEKKFEQKSHLLLHQKTVHEGRQDFVCDKCEKKFGHKQQLLGHQKTVHEGRKDYACNNCEKKFGSTSDLLKHQRTVHEGRRDYLCDNCGKKFGHKWNLLLHQKVVHEGRKDYACDICEKKFGQQSNLLTHLKIVHKSRKDFPCDKCVKKFGQKSHLLLHQKTVHNGRKDFVCDKCEKKFGHKWNLLLHQKVVHEGRKDYACDICEKKFGSTSDLSKHQRTVHEGRKDFACEKCEKKFGLKYNLLVHQKTVHDGRKDFACDKCNKKFEKKSHLLCHQKRAHKIRVDFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -