Tbra014190.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
-
Assembly
GCA_902806795.1
Location
CADCXV010001460.1:1304315-1314169[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.0036 0.15 12.5 0.3 1 23 13 36 13 36 0.95
2 43 9.8 4.2e+02 1.7 2.8 2 23 42 63 41 63 0.95
3 43 0.49 21 5.8 2.4 1 23 68 91 68 91 0.94
4 43 4.3e-05 0.0018 18.5 0.6 1 23 97 119 97 119 0.98
5 43 4.8e-05 0.002 18.4 0.7 1 23 124 147 124 147 0.98
6 43 0.041 1.8 9.1 0.7 1 23 153 175 153 175 0.98
7 43 0.026 1.1 9.8 4.2 1 23 179 202 179 202 0.96
8 43 0.0098 0.42 11.1 1.3 3 23 210 230 209 230 0.96
9 43 0.00017 0.0074 16.6 1.3 1 23 236 259 236 259 0.95
10 43 0.00073 0.031 14.6 0.9 1 23 293 315 293 315 0.98
11 43 5.8 2.5e+02 2.4 0.2 1 23 352 375 352 375 0.92
12 43 0.13 5.6 7.5 5.9 1 23 489 511 489 511 0.98
13 43 0.015 0.62 10.6 2.0 1 23 530 553 530 553 0.96
14 43 0.86 37 5.0 2.5 1 23 585 608 585 608 0.96
15 43 0.00012 0.005 17.1 1.2 1 23 614 637 614 637 0.96
16 43 0.0067 0.29 11.6 0.4 3 23 644 665 642 665 0.94
17 43 0.014 0.61 10.6 0.6 1 23 670 693 670 693 0.97
18 43 9.2e-07 3.9e-05 23.8 0.2 2 23 700 721 699 721 0.97
19 43 1.6e-06 6.6e-05 23.1 0.2 1 23 727 749 727 749 0.98
20 43 1.9e-06 8.2e-05 22.8 0.4 1 23 755 777 755 777 0.98
21 43 0.035 1.5 9.4 1.7 1 23 885 908 885 908 0.94
22 43 9.7 4.1e+02 1.7 3.3 2 23 1076 1098 1076 1098 0.96
23 43 2.2 93 3.7 6.9 2 23 1122 1144 1121 1144 0.96
24 43 0.11 4.9 7.7 2.0 2 23 1192 1214 1192 1214 0.95
25 43 7.4 3.2e+02 2.0 1.7 1 23 1250 1273 1250 1273 0.91
26 43 0.061 2.6 8.6 3.2 1 23 1288 1311 1288 1311 0.96
27 43 5 2.1e+02 2.6 3.5 1 23 1321 1344 1321 1344 0.95
28 43 0.78 33 5.1 1.8 1 23 1393 1416 1393 1416 0.96
29 43 0.055 2.4 8.7 2.0 1 23 1432 1455 1432 1455 0.95
30 43 9.2e-05 0.0039 17.5 1.6 1 23 1461 1484 1461 1484 0.95
31 43 0.013 0.54 10.8 1.0 3 23 1491 1512 1489 1512 0.93
32 43 0.0049 0.21 12.0 0.4 1 23 1517 1540 1517 1540 0.97
33 43 3.9e-07 1.6e-05 25.0 0.4 2 23 1547 1568 1546 1568 0.97
34 43 9.2e-05 0.0039 17.5 0.6 1 23 1574 1596 1574 1596 0.98
35 43 6.9e-06 0.00029 21.0 1.4 1 23 1602 1624 1602 1624 0.98
36 43 0.055 2.4 8.7 0.4 1 23 1730 1753 1730 1753 0.97
37 43 0.041 1.8 9.1 0.2 3 23 1782 1803 1780 1803 0.96
38 43 0.00017 0.0074 16.6 0.6 1 23 1854 1877 1854 1877 0.97
39 43 0.0042 0.18 12.2 0.4 1 23 1882 1905 1882 1905 0.96
40 43 0.072 3 8.4 1.6 1 23 1910 1933 1910 1933 0.96
41 43 2.1e-06 9.1e-05 22.6 2.5 1 23 1939 1961 1939 1961 0.99
42 43 2.7e-05 0.0012 19.1 5.1 1 23 1967 1989 1967 1989 0.97
43 43 0.00016 0.0067 16.7 1.3 1 23 1995 2017 1995 2017 0.97

Sequence Information

Coding Sequence
atgttgaagtGCGTGAAGAAAGTGTCGTTCGGAGTATATCTTTGCACGATATGTGGCACAGAATTCACCCAGCGTAGCTCGGTACCAGCTCACATTAAGCGAAAACATTTCAAAGAGCCTAAAACGTGCGAGGTCTGCAACGTCGTGTgtcaaaatgattttaaatatcaacTGCACCAAAAACAACACGAGACACAACAATATTTCTGCGACAAATGCGACTACGTGGCTAAATCTAAGTACTACATCAAGACACATTTCATCAGAAAGCACACGGACGAACGTGACTTCGAGTGCGACCTGTGCGGCAAAAAGTTCAAGATCAAGAGCGACGTGAAATCGCATATGGCGTCGCACAACGTGGCAGAGTACGTTTGCGACATATGCGGTAAAATGTTCCCGAGCCACAATTCGGTGGTCAGACACAGAAGGGTTCAGCACCTGAACGTTTACAATTTCAAGTGCGACATCTGCAACGAAAAGCTCCTGACTCAGGAGAGCTTGGACAGGCACGTGAAGAAGCACGACCGTACGTTCAACTGCGACGAGTGCGACTGGAAATTCTTGAAGAAGCACTACCTCACGCGCCACAAGAAGCGAGTGCACAGAGTGGAGAAGAACAATCTGTGCAATGTGTGCGGCAAGAGCTTCGTCTGCTCGTCCACGCTCAGGGTGCACAGTCTCATTCATTCCAAGGTCAAGCCCTACCTGTGCAACGTCTGCGGATTCAGCTTCACTCAGAGATCGTCGATGATGCTGCATTGGAGGCGAAAGCATCCGGACGCCATCACGCCTCCGCCGCCGGTCACATACGTCTATGTTAGAGAGAAGAATCAAGGGAAAGTGCGAACGAGCGTCGCGAAAATTGCGCAGCTTCACACGTGCAACGAGTGCGACCTCGAGTTTACCAGCCCTACGAGACTCGCATGGCATCGGTCCACCCACGACCCGTTGAATACTCGAAAAAAGTCAGAAAAACGTCCGAGTCTTGCGAGAAAGATCACAGAAAGCgagctgcagtgcagtgcacaGACGACGAGACAAGTGACGACTTACATTTGTCCGTCGTGCCCGTTCACCACTATCATCCGGGGCGACATGATCAAGCACTTCACGAAATCCCACTGCTACTCCGACAAAGCGGCTCGCGACAGCGAGGAAAACGTAAAGCAAGAGGTCGAGGAAGACGAGATGGATTTCGAGGCCGAGGTGTTGGAGGACGAAATTCTGTCGGACGACAAGGTCGCCATCACTATAACCGAGCTCAAGTGCACCAAGTGCGACTTCACGTCGGAAAATCAAGCCGATCTAGACTTTCACACGTGCCGCGCCAAGGGCAGCAACAAAGACTCGAGCAAGTTCCTCTGCCACCTGTGCACTTACGAGGGCCTGACTCGCATGGGCCTGCAAAGCCACATAACGCGCAAGCACAAGCCCAAACCCGAGACTGGCGTGCCCAAGAGCTACTGCTGCGACGAGTGCGACTACAGGTGCGGCTCGAAGAACGCCCTCTACTCGCACAAGCGCAAGCACAGGCGGGGGACCATCAAGATGAACGCCCCGGCAGAGCAGGAGCCCGGCGACAGGTTCTACTGTCACGAGTGCGACTACGTGGCCAACACGAAGCAGGGCCTGTCCCAGCACATAACGAAGAAGCACCGATCTGACGAGAGCGCCGGTagcggtggtggtgctgcGGGCGGCACCTCctccgccgctgctgctgccggcagcagcagcgagaagcCCGTGTACAACTGCGAGCACTGCAGCTACGTCAACAAGAACAAGTACGAGATGAAGGTGCACGTGATACGCAAACACTCGAACGAGTACAACTACTCGTGCGAGATATGCGGCAAGAAGTACAAGATCAAGGGCGACCTGACCAATCACACGAGATTCACGCATCTAGAGCAGCCGGTCATCTGCGACGTATGCGGCAAGGTCTGCCAGAACAGCAACGCTCTGTACGTGCACCAGAAGTTCGCGCACTACAAGGCCGAGTTCGAGTGCCCGACCTGCCATCGGCGCATGGTCAGCCAGGCCAATCTCGACGACCACATACTGAAGCAGCACGAGCAGCGCGAGGACGTCGTCTGCGAGGAGTGCGGCAAGCAGTTCACGCGCGCCTCCCGCCTCAAGATTCACATGCGCATACACACGGGCCTCAAGCCGTTCGTCTGCAAGGTCTGCGGCAAGGCCTTCGTGCGCAAGACCGCCCTGAGGCAGCACCTGCTCATACACACGGGCCAGAGGCCCTACGTCTGCGACATCTGCGGCAAGTCCTTCACCCAGAAGCCGGGCCTGCTCAGCCACAGAAAGAGCCATCCGGGCACGCATCCACCCCTGCCGAGAATCTCCATCAATAACGTCCTatCGACGCAGCAACAGCGCCAGCAGCCTAACCTAAGTAATTCGGCGCATAAAGTAGCCGCGAAGCTGCATCCTAAACAAATGGCGAAATTCATGCATCCGGAGAGCATCAAGATCGAGCGAGTCGAGTCTCTGGCGCCACAGACCAAGTCCACGGTCGGCGGGGCCGATTTCGAGGAAGTTTATATCGACGGATCGGACATGATTGCCGAGTCGAACAACAAAACGACGAATCAACAACAATCGGCGGCTCAGGAAACAAGTGATATGATCGTGTACATGTGCACCCCTTGCCAGACTTACTTCCCGACGAAGTCGCAGCTGGAAGTGCATCACAAGGAGTCGCACGCGGCCACCAAGCCGGCCGTTAAAAAGGTCAAACTGCAGCAGCTTCTCATGCAGATCAAGCAGGAGCAGCGGCCCAAGCCGAGGCCGTGCTTCGATCAGGAAGAGAACAAAGTATTTTTCCGGCTTTATCATAAAGACTTGAATACCAACGAGTTCGTCTGTAATTTTTGTCCGTATCGATCAGTCATACGAACGACGGTCTCGTCGCACGCCAAGCGAAATCACATGTCAGCGGGTTTTGATAacgaggaggaagaagaatcCTTCGAGGTGATTAAAACTAAGCAGGAGCAGGAGGATgtcgacgaagaagaagatgaattATACGACGAAACGCTCGTGGATGAGATGAAAATGGAGGTGATGGACGAGGAGATGATCGCGATacacgacgaggacgacgagtcATCGTGGCCCATCGAAACCGTCGACGAGACGTTCGAAGAGCAGATGCAGAATCACGAGCCGGAGGCAGTCTCCGACAGCGAGGATCGGATGCGCACCTGTCCCTACTGTTCGTTCCAATCGACGGTAACTTCGACCTATCACTCGCACGTAAAACGTAAACATCGCGAGGAATGGGCGGCCGAAAACGCAATGAAAGCCGCCATGGCCAAGACCCCCGAGGGCCCCGAGCTCCAGTGTCAACACTGTGACTTCACCACGTACAAGCGCAATACTCTGCACTCGCACGTCAAACGCAAACACGGACTCAAGCGCAAGCTCGACGAGACCGACTtggacgacgtcgacgacaacTTCGTAGAGGTCAAGGAAGAGTTGCTCGACGAGTCCGAGGCCGCTTTGGCCGACGGCGCTGCCGAGTCCGACGTACAGTCCAAGATACGCTCGTGTCCGTACTGCAACTTTCAGACTCGCAACACGTCGACTTTCAACAGCCACGTGCTGCGCAAACACGGCAGCAACGCCAAGCGAAGCGCGTCCGGCCTCGGCGGAGCCTCGAGTCGTGCAGCCGCCAGCAAGAAGAGCAAGACGGCCTCCAACAGCTTCATGATCACTGGCTACGCGTGCCACTATTGCGCGTTCGTCGCCGCGACGATACATAGCCTCACCAGTCACAACACGCGGATGCACGCGAGTATGAAGCAGCCCGTCCAGGAGATACCGACCGATCAGTTCGATTGCGACCGTTGCGAGTACAAAACGCGCAATCGGCGCAACATGCAAACTCACTTGAAAAAGAACCACAAAGGTCAAGCGAATGCCGATGGCATGTACTGCTGCAACGCCTGCTCCTACGAGACCATGTCGCACATGGGTCTGCAGAGGCACATGTCGATCAAGCACCAGAAACCGAATCTCACCAATAATGTGCCCTGCTATCAATGCGAGGTTTGCGAGTTTAAATGCctgaacataaaaattatggaTTGGCATCTCAAATCGCATTGCAGCGATAATCGCACCAAGGCCGAGGAATCCGGAATCATTTTCTTCTGCAACGACTGTGACTTCTCCACCTGGCTAAAGACCCTGTTGTTCTCGCACATACGTCGAAAACACAAGGACGGAGAGGGCAAGGACGAACAGGACGAAGGCGAGCCTCTTTTCGTGTGCGAGCAGTGTGATTACTCGACAAAAAATAAGCACGTCATGAAGGTTCACGTGATTCGTAAGCACACGGAAAACTACAGCCACGAGTGCGATATTTGCGGCAAAAAGTACAAAGTCAAAGCGGACCTGACGAATCACGTCAGGTTTAAGCATCGCGAACAGCCCATTATTTGCGACGTATGCGGTAAAACTTGCCAGAATAGCAATCTGCTGTATCTGCATCAGAAGTTCGCCCATTACAAGCCGGAATTCGAGTGTCCGATTTGCCATCGGCGCATGGTCAGTCAGGCCAATCTCGACGACCACATACTTAAGCAGCACGAGCAGCGCGAGAACGTCGTCTGCGAGGAGTGCGGCAAGCAGTTCACGCGCGCCTCGAGGTTGAAGATTCACATGAGAACGCACACGGGCTTGAAACCGTATTCTTGTAAAGTATGCTTAAAATCTTTTGCACGGAGGAACGGATTGAGGCAGCATCTTCTAATACACACGGGCAAAAAGCCATACAGCTGCGATTTGTGCGACAAATCCTTTACTCAGAAAACGGGCTTGATAAGCCACAGGAAGAGTCATCCTGGATCTCATCCGCCTTTACCGAGGGTCACTATTGATCACGTACTTTCAAATTTACTTGAAGAAAGACACCGTAAACACGACAATTTCGTTGACCCCGACGAGCAAGGATCGGATTTTTCCGATCTCTGGGACTCGAACGAAGCCAGCAGGGACGGATTGAGACTATCCGGatcagacgacgacgatgccaGTCGGGATAACAGCAACTTGCCAGAAGTCGCTGGAAATTCGCGTGGGAAAAATAAAGCAGCCGCCGCATCGGAAGACGATTACGACAAGACGCACGACGGCTTCCCGAGGACGAGAACGGAGTACCGCTGCCAGTATTGCGATTTCAGGTCGATATCGCGCGCGGCGATGGCCACGCACTTGCTGAAGGAGCACAGCGACGATTGGAATGCGGCCGTCGCTCTGCGCCAGCAGGAGGTGCGCGAGTTCAGTCAAGGCAACAGCGACAATATCATGGCCTGCCTGTACTGTCCGTTCGCGGCCACGAGCAGGTCGACGCTGGCGGCGCACACGAGACGCAAGCATCAGGGCTACTTGCAGGCCTATCAGGTCGAGCCCAAGAGCCGCCAGTTCAAAGCCAAGGTTGATCTGaagtgcgacaagtgcgactTCGTGACGCAGTGCAAGCACAAGCTCGCCACCCACGTCGGCAGGAAGCACACGACCGAGCTCAACTTTCCCTGCCGTTACTGCGGCAAACGCTTCAAGATGAAGGTGGACGTGTCCGCGCACATCAAGATGCAGCACGAGCAGACGCCCCACATTTGCGACGTCTGCGGCAAGGTCGTCGGTAGCGCCAACGCGCTCCACATACACCAGAAGCGCGAGCACTTTCAGCCCGAGTTTCAGTGCCACCTGTGCAGGCGGCGCATGGTCAGCCAGGAGAATCTCGACGACCACATGGTCAGGCAGCATATGAACGCGCCCAAGTACCAGTGTGAGCAGTGCGGCAAGATATTCGGCCAGCCCTGCAAGCTCAAGCAGCACATGAGGACACACACGGGCGAGCGTCCGCACACCTGTCACAAGTGCGGCAAGTCCTTCGCGAGGCGTTCCGTTTTTCGCCAGCACATGCTCATTCACACGGGCCAGAGGCCCTACGTCTGCGACATTTGCGGCAAGTCCTTCACGCAGAAGCCCGGATTGATATGCCACAGGAAGAGCCATCCAGGCGAGAAGCCACCGTTGCCGGTCGTCTACATCGACAGCATACTCACGGATTTCGTCAACAACGATTTGAACGATGCCAAGCAGCCGGAGGAGATCATCGAGGAGACGGTCAACTTCGACGACTGTCTGATGGAAGATTAA
Protein Sequence
MLKCVKKVSFGVYLCTICGTEFTQRSSVPAHIKRKHFKEPKTCEVCNVVCQNDFKYQLHQKQHETQQYFCDKCDYVAKSKYYIKTHFIRKHTDERDFECDLCGKKFKIKSDVKSHMASHNVAEYVCDICGKMFPSHNSVVRHRRVQHLNVYNFKCDICNEKLLTQESLDRHVKKHDRTFNCDECDWKFLKKHYLTRHKKRVHRVEKNNLCNVCGKSFVCSSTLRVHSLIHSKVKPYLCNVCGFSFTQRSSMMLHWRRKHPDAITPPPPVTYVYVREKNQGKVRTSVAKIAQLHTCNECDLEFTSPTRLAWHRSTHDPLNTRKKSEKRPSLARKITESELQCSAQTTRQVTTYICPSCPFTTIIRGDMIKHFTKSHCYSDKAARDSEENVKQEVEEDEMDFEAEVLEDEILSDDKVAITITELKCTKCDFTSENQADLDFHTCRAKGSNKDSSKFLCHLCTYEGLTRMGLQSHITRKHKPKPETGVPKSYCCDECDYRCGSKNALYSHKRKHRRGTIKMNAPAEQEPGDRFYCHECDYVANTKQGLSQHITKKHRSDESAGSGGGAAGGTSSAAAAAGSSSEKPVYNCEHCSYVNKNKYEMKVHVIRKHSNEYNYSCEICGKKYKIKGDLTNHTRFTHLEQPVICDVCGKVCQNSNALYVHQKFAHYKAEFECPTCHRRMVSQANLDDHILKQHEQREDVVCEECGKQFTRASRLKIHMRIHTGLKPFVCKVCGKAFVRKTALRQHLLIHTGQRPYVCDICGKSFTQKPGLLSHRKSHPGTHPPLPRISINNVLSTQQQRQQPNLSNSAHKVAAKLHPKQMAKFMHPESIKIERVESLAPQTKSTVGGADFEEVYIDGSDMIAESNNKTTNQQQSAAQETSDMIVYMCTPCQTYFPTKSQLEVHHKESHAATKPAVKKVKLQQLLMQIKQEQRPKPRPCFDQEENKVFFRLYHKDLNTNEFVCNFCPYRSVIRTTVSSHAKRNHMSAGFDNEEEEESFEVIKTKQEQEDVDEEEDELYDETLVDEMKMEVMDEEMIAIHDEDDESSWPIETVDETFEEQMQNHEPEAVSDSEDRMRTCPYCSFQSTVTSTYHSHVKRKHREEWAAENAMKAAMAKTPEGPELQCQHCDFTTYKRNTLHSHVKRKHGLKRKLDETDLDDVDDNFVEVKEELLDESEAALADGAAESDVQSKIRSCPYCNFQTRNTSTFNSHVLRKHGSNAKRSASGLGGASSRAAASKKSKTASNSFMITGYACHYCAFVAATIHSLTSHNTRMHASMKQPVQEIPTDQFDCDRCEYKTRNRRNMQTHLKKNHKGQANADGMYCCNACSYETMSHMGLQRHMSIKHQKPNLTNNVPCYQCEVCEFKCLNIKIMDWHLKSHCSDNRTKAEESGIIFFCNDCDFSTWLKTLLFSHIRRKHKDGEGKDEQDEGEPLFVCEQCDYSTKNKHVMKVHVIRKHTENYSHECDICGKKYKVKADLTNHVRFKHREQPIICDVCGKTCQNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQRENVVCEECGKQFTRASRLKIHMRTHTGLKPYSCKVCLKSFARRNGLRQHLLIHTGKKPYSCDLCDKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSNLLEERHRKHDNFVDPDEQGSDFSDLWDSNEASRDGLRLSGSDDDDASRDNSNLPEVAGNSRGKNKAAAASEDDYDKTHDGFPRTRTEYRCQYCDFRSISRAAMATHLLKEHSDDWNAAVALRQQEVREFSQGNSDNIMACLYCPFAATSRSTLAAHTRRKHQGYLQAYQVEPKSRQFKAKVDLKCDKCDFVTQCKHKLATHVGRKHTTELNFPCRYCGKRFKMKVDVSAHIKMQHEQTPHICDVCGKVVGSANALHIHQKREHFQPEFQCHLCRRRMVSQENLDDHMVRQHMNAPKYQCEQCGKIFGQPCKLKQHMRTHTGERPHTCHKCGKSFARRSVFRQHMLIHTGQRPYVCDICGKSFTQKPGLICHRKSHPGEKPPLPVVYIDSILTDFVNNDLNDAKQPEEIIEETVNFDDCLMED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-