Tbra010348.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
-
Assembly
GCA_902806795.1
Location
CADCXV010000664.1:166346-171301[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.4e-06 5.8e-05 23.2 0.5 1 23 27 50 27 50 0.97
2 20 1.5e-06 6.5e-05 23.1 0.6 1 23 56 79 56 79 0.97
3 20 9.5e-06 0.0004 20.6 0.5 1 23 93 116 93 116 0.96
4 20 0.032 1.3 9.5 2.5 1 23 122 145 122 145 0.95
5 20 8.1e-06 0.00035 20.8 0.1 1 23 151 174 151 174 0.97
6 20 1.8e-05 0.00078 19.7 0.7 1 23 180 203 180 203 0.98
7 20 2.5e-05 0.0011 19.2 4.9 1 23 209 232 209 232 0.98
8 20 0.044 1.9 9.0 2.6 1 23 238 261 238 261 0.94
9 20 8.1e-06 0.00035 20.8 0.1 1 23 267 290 267 290 0.97
10 20 1.8e-05 0.00078 19.7 0.7 1 23 296 319 296 319 0.98
11 20 2.5e-05 0.0011 19.2 4.9 1 23 325 348 325 348 0.98
12 20 0.0001 0.0042 17.4 0.7 1 23 354 377 354 377 0.96
13 20 0.1 4.5 7.9 0.5 1 23 383 406 383 406 0.91
14 20 0.0036 0.15 12.5 2.1 1 23 412 435 412 435 0.98
15 20 4.9e-05 0.0021 18.3 0.7 1 23 441 464 441 464 0.98
16 20 9.9e-06 0.00042 20.5 4.7 1 23 470 493 470 493 0.97
17 20 9.8e-05 0.0042 17.4 2.6 1 23 499 522 499 522 0.97
18 20 1.6e-06 6.9e-05 23.0 0.8 1 23 528 551 528 551 0.98
19 20 9.9e-06 0.00042 20.5 0.8 1 23 557 580 557 580 0.98
20 20 0.00012 0.0051 17.1 5.6 1 23 586 609 586 609 0.98

Sequence Information

Coding Sequence
ATGTATCTCTGTGGTGCGCGCCGCAGCGACCTGACAACAACAATTAGCGTCGATATAGTACACGatgatcgcaaagattacgcatgcgacaaatgcggagagaagtttgaaaaaaaatctagttTGCGATGGCACATGACGACAGTCCATGAgcgtcgcaaagattacgcatgcgataattgcgagaagcaatttggacaaaaatcggatttgcttaggcaccaaagaacagtacacgagggtcttaaaaatatccccttgaaagttttcaaagattatctatgcgacaagtgcgagaagagattcggacaaaaatggggtttgatcaggcaccaaagaacagtccatgaaagtcgcaaagattatgcatgtgacaagtgcgagaagaaattcggacataaaCCGTCTTTGCTGTTCCACCAAAAGATattccacgaaggtcgcaaagattatgcatgtgacaagtgcgagaaggcATTTGGTGAACCAAGCACtttgattagacaccaaaaaactgttcacgaaggtcgcaaagattatgtatgtgataagtgcgagaagaaatttgtacgAAAATTGGATTTATTAAATCACCAAAgtacagtccacgagggtcgcaaagatttcacatgcgacaGATGTGATAAGACATTTGGACACGTATCGAATTTGTTCCGCCACCGAAAAACattccatgaaggtcgtaaagattttgcatgtgacaagtgcgagaagaaattcggacataaaCCGTCTTTGCTGTTCCACCAAAAGATattccacgaaggtcgcaaagattatgcatgtgacaagtgcgagaaggcATTTGGTGAACCAAGCACtttgattagacaccaaaaaactgttcacgaaggtcgcaaagattatgtatgtgataagtgcgagaagaaatttgtacgAAAATTGGATTTATTAAATCACCAAAgtacagtccacgagggtcgcaaagatttcacatgcgacaGATGTGATAAGACATTTGGACACGTATCGAATTTGTTCCGCCACCGAAAAACattccatgaaggtcgtaaagattttgcatgcgacgaCTGCGATAAGACATATGGACTAAAACAGCATTTGCTGGACCACCAAAggatagtccatgaaggtcggaaagattacgcatgcgacgaATGCAAGAAGAAGTTTGGAGGAAAAATAGATATGCTtttccaccaaaaaacagtacatgaacgtcgtaaagattttgaatgcgataagtgcaagaagaaatttggaaaaaaatggattttgtttcagcatcaaaagacagtccacgaaggtcgtaaagattttgtatgcaataaatgcgaaaagaaatttgcacgaaaatgggttttgcttttacaccaaaagacggtGCACGAAGGTGACAAAAGCTTCGTATGTGATAAGtgccagaagaaatttggacacaaatcgcatttgctgaaccaccaaaggatagtacatgagggtcgcaaagactacgcatgcgacaattgcgaaaagaagttCGGATATAAACAGCATTTGTTGAACCACCAAAAGACGATACACGCAGGTCGTAAGGATTATAAGTGCGAcgattgtgaaaaaaaatttggatttgaATCGGATTTAATCaggcatcaaaagacagtacacgaaggtcggaaagattattcatgcgacaagtgcgaaaagaaatttggacaaaaaattcagTTGCTCAtccaccaaagaacagttcacgaaggtcgaaaagattacagatgcgagaaatgcgagaaaaattttggacatAAAGTGAGTTTGCacaaacaccaaaagacaatacacgaaggttgcaaagatttcgcatgtgacaagtga
Protein Sequence
MYLCGARRSDLTTTISVDIVHDDRKDYACDKCGEKFEKKSSLRWHMTTVHERRKDYACDNCEKQFGQKSDLLRHQRTVHEGLKNIPLKVFKDYLCDKCEKRFGQKWGLIRHQRTVHESRKDYACDKCEKKFGHKPSLLFHQKIFHEGRKDYACDKCEKAFGEPSTLIRHQKTVHEGRKDYVCDKCEKKFVRKLDLLNHQSTVHEGRKDFTCDRCDKTFGHVSNLFRHRKTFHEGRKDFACDKCEKKFGHKPSLLFHQKIFHEGRKDYACDKCEKAFGEPSTLIRHQKTVHEGRKDYVCDKCEKKFVRKLDLLNHQSTVHEGRKDFTCDRCDKTFGHVSNLFRHRKTFHEGRKDFACDDCDKTYGLKQHLLDHQRIVHEGRKDYACDECKKKFGGKIDMLFHQKTVHERRKDFECDKCKKKFGKKWILFQHQKTVHEGRKDFVCNKCEKKFARKWVLLLHQKTVHEGDKSFVCDKCQKKFGHKSHLLNHQRIVHEGRKDYACDNCEKKFGYKQHLLNHQKTIHAGRKDYKCDDCEKKFGFESDLIRHQKTVHEGRKDYSCDKCEKKFGQKIQLLIHQRTVHEGRKDYRCEKCEKNFGHKVSLHKHQKTIHEGCKDFACDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-