Tbra016706.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma brassicae
Gene Symbol
-
Assembly
GCA_902806795.1
Location
CADCXV010000458.1:242176-251780[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.53 23 5.6 0.3 8 23 30 46 29 46 0.91
2 21 8.3e-06 0.00035 20.8 0.5 1 23 62 85 62 85 0.97
3 21 1.1e-05 0.00048 20.3 1.1 1 23 91 114 91 114 0.97
4 21 0.00047 0.02 15.3 0.6 1 23 120 143 120 143 0.96
5 21 2.7e-05 0.0011 19.2 2.3 1 23 149 172 149 172 0.98
6 21 0.00041 0.018 15.4 0.3 1 23 178 201 178 201 0.96
7 21 0.00018 0.0078 16.5 1.1 1 23 207 230 207 230 0.98
8 21 0.00011 0.0049 17.2 1.7 1 23 236 259 236 259 0.98
9 21 1.8e-05 0.00075 19.7 1.1 1 23 265 288 265 288 0.97
10 21 1.1 45 4.7 0.1 8 23 301 317 296 317 0.89
11 21 3.8e-05 0.0016 18.7 0.6 1 23 323 346 323 346 0.96
12 21 1e-05 0.00044 20.5 1.5 1 23 352 375 352 375 0.98
13 21 3e-06 0.00013 22.1 1.0 1 23 381 404 381 404 0.97
14 21 0.00018 0.0078 16.5 4.0 1 23 421 444 421 444 0.98
15 21 3.2e-06 0.00013 22.1 3.0 1 23 450 473 450 473 0.98
16 21 8.3e-07 3.5e-05 23.9 0.5 1 23 479 502 479 502 0.97
17 21 1.8e-05 0.00075 19.7 3.1 1 23 508 531 508 531 0.97
18 21 1.2e-06 5.3e-05 23.4 0.8 1 23 537 560 537 560 0.97
19 21 8.4e-05 0.0036 17.6 2.4 1 23 566 589 566 589 0.98
20 21 0.015 0.64 10.5 7.4 1 23 595 618 595 618 0.97
21 21 1.6e-06 6.6e-05 23.1 1.1 1 23 624 647 624 647 0.97

Sequence Information

Coding Sequence
ATGTTTGCCTGGCTCCTcgcgatatttatatatcggaTGGctctgctctcgcgcgcgagcctcgctgctgctgctgctcctttcGGTCTGCAATTTGACAATAGACAtaatttgctcttgcacatacaAACGGTACACGAGGATCACACGGATACAGATCTCGCCttcaaagttttcaaaaattacttctGCGACGattgcgggaaaaaatttggtaaAAAATCGAACTGGCTTGTGCACCAAAAGAtcgtacacgaaggtcgcaaagattacgcatgcgattaTTGTGAGAAGACATTTGGAGCAAAAGGGGATTTGACCAGGCATCataggacagtccacgaaggtcggaaggATTTCGCATGTaacaaatgtgagaaaaaatttggacaaaaaccggGTTTGCTCTACCATCAAAAatcagtacacgaaggtcgcaaagattactcatgcgacaaatgcgaaataaaatttacactaAAATCAAATATGTTTAAGCACCAacggacagtacacgaaggtcgaaaagattttgcatgtgacagtTGTGAGAAGATATATGGACGAAAATCAAGTTTACTTtcgcaccaaaaaatagtacacgaaggtcgcaaggattatacctgtgacaattgcgagaagaaatatggaaaaaaacggaatttgctcttacacataaagtcagtacatgaaggtcggaaagatttcgaatgcgacaaatgcgagaaaaaattcagcaGTAAACAGTATGTGCTTCTTCATCAGAAGacggtacacgaaggtcacaaagattatgcatgcggcAGATGTGAgcgaaaatttggacaaaaatcagatttgtttcGGCACCAAAAGACTGTACATAAAAGTCTCAAAGATTTCCTATGCGACAAGGACGGGGagaagcttaaaaaaaaatcgtatttgcttgtccatcaaaaaacagtacacgagggtcgaaaagattttgcatgtgacaagtgcgaaaaaaaatttggaagtaaatcagttttgttaaagcaccaaagaatagtacacgaaggtcgcaaagattacgtatgctaCGATTGCGATAAGACATTTGGTCAAAAAGCTCATTGGATCAGGCACAAAAATACagttcacgagggtcgcaaagattatgcatgtgacaaatgcgagaaaaaatttggaagaaaatcgtcgttgcttttgcaccaaagaacagtacacgaagttttgtttcggcaccaaaagacagtccacgaaggtcaaaaagatttctcatgtgacaaatgcgagaaaaaatttggacacaaaatTCATTTGTGGAACCATGaaagaacagtccatgaaggtcgaaaaggTTTCGAATGCAacgaatgcgagaagaaatttggacaaaaatcgcatttgttcgaccaccaaaagacagtccacgagggtcgaaaagattacgcatgcgatgtttgcgagaagaagttcggacaaaaatcagatttgttaaagcaccagaggacagtacacgaaggtcgaagagattatgcatgtgacaaatgcgagaggaaatttggacgaaaatcgcatttgttcgaccaccaaaagacagtccacgagggtcgaaaagattacgcatgcgatgtttgcgagaagaagttcggacaaaaatcagatttgtttcggcaccaaaagacagtccacgaaggtcaaaaagatttctcatgtgaaaaatgcgagaaaaaatttggacaaaaaattcatttgttgAACCATGaaagaacagtccatgaaggtcgaaaaggTTTCGAATGCAAcgaatgcgagaagaagtttggacataaacatcatttacttttccaccaaaagacagtccacgagggtcacaaagattacgcatgcgacatgtgcgagaagaagttcggacaaaaatcagatttgtttcggcaccaaaagacagtccacgaaggtcaaaaagatttctcatacatcgaagaacagtacacgaagtTTGTAAAGATAACGAGATCAATAAGTGTGAAAATTAGACGTGGGACTCTATAG
Protein Sequence
MFAWLLAIFIYRMALLSRASLAAAAAPFGLQFDNRHNLLLHIQTVHEDHTDTDLAFKVFKNYFCDDCGKKFGKKSNWLVHQKIVHEGRKDYACDYCEKTFGAKGDLTRHHRTVHEGRKDFACNKCEKKFGQKPGLLYHQKSVHEGRKDYSCDKCEIKFTLKSNMFKHQRTVHEGRKDFACDSCEKIYGRKSSLLSHQKIVHEGRKDYTCDNCEKKYGKKRNLLLHIKSVHEGRKDFECDKCEKKFSSKQYVLLHQKTVHEGHKDYACGRCERKFGQKSDLFRHQKTVHKSLKDFLCDKDGEKLKKKSYLLVHQKTVHEGRKDFACDKCEKKFGSKSVLLKHQRIVHEGRKDYVCYDCDKTFGQKAHWIRHKNTVHEGRKDYACDKCEKKFGRKSSLLLHQRTVHEVLFRHQKTVHEGQKDFSCDKCEKKFGHKIHLWNHERTVHEGRKGFECNECEKKFGQKSHLFDHQKTVHEGRKDYACDVCEKKFGQKSDLLKHQRTVHEGRRDYACDKCERKFGRKSHLFDHQKTVHEGRKDYACDVCEKKFGQKSDLFRHQKTVHEGQKDFSCEKCEKKFGQKIHLLNHERTVHEGRKGFECNECEKKFGHKHHLLFHQKTVHEGHKDYACDMCEKKFGQKSDLFRHQKTVHEGQKDFSYIEEQYTKFVKITRSISVKIRRGTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-