Tbra004697.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000928.1:263560-277564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.2e-05 0.0026 18.0 2.6 1 23 70 93 70 93 0.96 2 23 0.0048 0.2 12.1 1.5 1 23 99 122 99 122 0.95 3 23 0.0011 0.046 14.1 6.4 1 23 128 151 128 151 0.96 4 23 0.0043 0.19 12.2 0.8 1 23 157 180 157 180 0.96 5 23 1.9e-05 0.00082 19.6 0.6 1 23 186 209 186 209 0.98 6 23 7.2e-05 0.0031 17.8 0.5 1 23 215 238 215 238 0.97 7 23 0.00025 0.011 16.1 1.6 1 23 244 267 244 267 0.97 8 23 8e-06 0.00034 20.8 0.2 1 23 273 296 273 296 0.96 9 23 7.1e-05 0.003 17.8 0.5 1 23 325 348 325 348 0.97 10 23 1.9e-05 0.00079 19.7 0.5 1 23 354 377 354 377 0.97 11 23 3.2e-06 0.00014 22.1 5.4 1 23 383 406 383 406 0.96 12 23 6.7e-05 0.0028 17.9 0.5 1 23 412 435 412 435 0.96 13 23 2.6e-06 0.00011 22.4 0.9 1 23 441 464 441 464 0.96 14 23 0.00053 0.023 15.1 3.1 1 23 470 493 470 493 0.97 15 23 8.2e-05 0.0035 17.6 1.7 1 23 499 522 499 522 0.97 16 23 2.6e-05 0.0011 19.2 0.7 1 23 528 551 528 551 0.96 17 23 0.0048 0.2 12.1 4.1 1 23 557 580 557 580 0.95 18 23 3.7e-06 0.00016 21.9 1.3 1 23 586 609 586 609 0.97 19 23 5.6e-05 0.0024 18.2 1.4 1 23 615 638 615 638 0.97 20 23 2.7e-05 0.0011 19.2 1.0 1 23 644 667 644 667 0.96 21 23 1.3e-05 0.00057 20.1 4.6 1 23 673 696 673 696 0.97 22 23 7.3e-05 0.0031 17.8 0.6 1 23 702 725 702 725 0.96 23 23 8.6e-05 0.0037 17.6 0.5 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- AAGACCTCGTCGTTTAATTTAGGTactaaaatggataaaaatgaaaagaaaccTGACGAAGAtgtctcaaaaaataatttaaacaaacaCGACATTGTGGTTTTGGatgccaaaaaatatattagcgATATTGGTCAGGATTTGTCAGTTATACTAGAATCAAGTTTGATAACATACCGAGAAACAATTCATGATGAACACAAAgactatgcatgcgacaagtgcgaaaagaaatttgagttccgaagtcatttgagtagacaccaaatttCAGTACACAGAAGCcacaaaaattttgcatgcgaccagtgcgagaagaaatttttgaaaaaatcgagtttgtctacgcaccaaaaattagtacacaaagatggcgaaaatttcacgtgccacaagtgcgagaaaaaatttgaaaataaatcaacatttcttaagcacaataaaatattccacgaagtcttcaaagattacttatgtgaaaagtgcgcgaagaaatttggaaataaacagcgtttgctcttgcacataaagacagtccacgaaggtcgcaaagattacgtgtGTGACCAGTGCGAAAAGATATTTGGAAGAAAATCCTATTTACTCGACCACCAAAAGagagtccacgaaggtcggaaagatttcatatgcgacaagtgcgaaaaaaaatttggactaaaaggtaatttgctcttacaccaaagaacagtccacgaaggtctcCAAAATTTtgcgtgtgacaagtgcgaaatgaaatttgggCTCCAACATAATTTGataagacaccaaaagacagttcacgaaggtcggaaagattacgcatgcgacaagtgcgagaaggaATTCGGGgatcaatataatttaaacaatCACCAAATgatagttcatgaaggtcgcaaagattacgcgtgcgacaaAGTCCATGAGCACCACAAAGCTCTTTGTCGCAGCAACCGCGAAGGTCGTGAGGAAttcgcatgtgacaggtgcgagaagaaatttggaagaatATGgaatttgatcagacaccaaaagacagaaCATGAGGGTcccaaaaatttcgcatgcgacaactGCGgtgaaaagtttataaaaaaatccaaattgatcttacaccaaaagacagtacacaaaatcttcaaagattacttatgtgacaattgcgggaagaaattcaggcataaacataatttgctgaagcacataaagacagtacacgaaggtcgcaaagattacgaatgcgacgagtgcgagaagaaatttaacCAAAAACCATATTtacttttgcaccaaaagGCAATGCACGAagatcgtaaagatttcgcttgcgacaagtgcgaaaagaaatatgTAAATCAAAGCCAGTTAAATcgacaccaaaaaataatccacGAAGATCAcagagattacgcatgcaacaattgcgaaaagaaatttggacttaaatatcatttatttttacaccaaaagacagttcacgaaggtcgtaaagattttgcatgcgataattgcgagcaaaaatttgaacGACATTATgctttgatcagacaccaaaagacagtccacgaaggtcggaaagattacgcatgttacacgtgcgaaaagaaattcggagataaaaataatttaattagacaccaaaaaatagtccatgaaggtcgcaaaaattacgcatgcaacaaatgcgagaagaaattcggacataaatattatttgctTATGCATCATGATATGGTACACGAAGGACGCAGGGATTATGCttgtgataagtgcgaaaagaaatttggacaaaaagtacaattgttcagacaccaaaggaccgtccacgaaggtcggaaagatttcgcttgtgacaagtgtgagaagaattttacagaaaaaaagagtttgctctcccaccaaaagacagttcatgaagatcgcaaagattacaaatGCAACGAGTGTGAacaaaaatttggagaaaaatcaacattAACCAGACATCAAAaagcagtccacgaaggtcgcaaagattacgtatgccacaaatgcgagaaaaaatttggacaaaaatcgcatttgcgcTTACACCAAATGGTattacatgaaggtcgcaaagattacaaatGCGACGAGTGTGaacagaaatttggagaaaaatcgaaattgatcagacaccaaaaggcagtacacgaaaattgcaaagattttgcgtgtgacaagtgtgagaaaagaTTTGGATATAAATGGAATTTGCTCTCCCATcaaaagatagtccacgaaggacgcaaagattacacatatccgccgccgccgccaccaaaGGCGATATCCTGGAGAGCGAAGATTCGCGTGtcAGGGGCACGTCGCGcgtttcttatatatatacacggccgcccccgcgcgcgcgagcatcgaCACGCACAAGTTTTCTGCGTCGCGCACCCCCGGCGCCATCGCACAGTACACGTGGTCTGGCCGaaatccgacggtgaccttggatttgaccctgaacataacctcttagctacagcgaaccaaaatcaCAATCAGAGCAcgtgtcgcgctccgaatggcaagtatagcagacgagagcagtgtcactccacgctcctcatatacacaagaatttaa
- Protein Sequence
- KTSSFNLGTKMDKNEKKPDEDVSKNNLNKHDIVVLDAKKYISDIGQDLSVILESSLITYRETIHDEHKDYACDKCEKKFEFRSHLSRHQISVHRSHKNFACDQCEKKFLKKSSLSTHQKLVHKDGENFTCHKCEKKFENKSTFLKHNKIFHEVFKDYLCEKCAKKFGNKQRLLLHIKTVHEGRKDYVCDQCEKIFGRKSYLLDHQKRVHEGRKDFICDKCEKKFGLKGNLLLHQRTVHEGLQNFACDKCEMKFGLQHNLIRHQKTVHEGRKDYACDKCEKEFGDQYNLNNHQMIVHEGRKDYACDKVHEHHKALCRSNREGREEFACDRCEKKFGRIWNLIRHQKTEHEGPKNFACDNCGEKFIKKSKLILHQKTVHKIFKDYLCDNCGKKFRHKHNLLKHIKTVHEGRKDYECDECEKKFNQKPYLLLHQKAMHEDRKDFACDKCEKKYVNQSQLNRHQKIIHEDHRDYACNNCEKKFGLKYHLFLHQKTVHEGRKDFACDNCEQKFERHYALIRHQKTVHEGRKDYACYTCEKKFGDKNNLIRHQKIVHEGRKNYACNKCEKKFGHKYYLLMHHDMVHEGRRDYACDKCEKKFGQKVQLFRHQRTVHEGRKDFACDKCEKNFTEKKSLLSHQKTVHEDRKDYKCNECEQKFGEKSTLTRHQKAVHEGRKDYVCHKCEKKFGQKSHLRLHQMVLHEGRKDYKCDECEQKFGEKSKLIRHQKAVHENCKDFACDKCEKRFGYKWNLLSHQKIVHEGRKDYTYPPPPPPKAISWRAKIRVSGARRAFLIYIHGRPRAREHRHAQVFCVAHPRRHRTVHVVWPKSDGDLGFDPEHNLLATANQNHNQSTCRAPNGKYSRREQCHSTLLIYTRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -