Tbra003225.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000898.1:727066-793370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0046 0.2 12.1 0.7 1 23 223 246 223 246 0.88 2 24 1.9e-05 0.00082 19.6 2.7 1 23 252 275 252 275 0.97 3 24 4.1e-05 0.0017 18.6 0.6 1 23 281 304 281 304 0.98 4 24 1.4e-05 0.0006 20.0 0.6 1 23 310 333 310 333 0.96 5 24 1.3e-05 0.00055 20.2 1.0 1 23 339 362 339 362 0.97 6 24 0.0014 0.061 13.7 3.1 1 23 368 391 368 391 0.97 7 24 2.3e-06 9.9e-05 22.5 1.0 1 23 397 420 397 420 0.97 8 24 0.0002 0.0086 16.4 1.0 1 23 426 449 426 449 0.98 9 24 2.3e-05 0.00098 19.4 0.6 1 23 455 478 455 478 0.96 10 24 2.4e-05 0.001 19.3 1.2 1 23 484 507 484 507 0.97 11 24 0.00015 0.0063 16.8 4.6 1 23 513 536 513 536 0.97 12 24 0.00071 0.03 14.7 1.0 1 23 542 565 542 565 0.97 13 24 0.0046 0.2 12.1 0.7 1 23 825 848 825 848 0.88 14 24 1.9e-05 0.00082 19.6 2.7 1 23 854 877 854 877 0.97 15 24 4.1e-05 0.0017 18.6 0.6 1 23 883 906 883 906 0.98 16 24 1.4e-05 0.0006 20.0 0.6 1 23 912 935 912 935 0.96 17 24 1.3e-05 0.00055 20.2 1.0 1 23 941 964 941 964 0.97 18 24 0.0014 0.061 13.7 3.1 1 23 970 993 970 993 0.97 19 24 2.3e-06 9.9e-05 22.5 1.0 1 23 999 1022 999 1022 0.97 20 24 0.0002 0.0086 16.4 1.0 1 23 1028 1051 1028 1051 0.98 21 24 2.3e-05 0.00098 19.4 0.6 1 23 1057 1080 1057 1080 0.96 22 24 2.4e-05 0.001 19.3 1.2 1 23 1086 1109 1086 1109 0.97 23 24 0.00015 0.0063 16.8 4.6 1 23 1115 1138 1115 1138 0.97 24 24 0.00071 0.03 14.7 1.0 1 23 1144 1167 1144 1167 0.97
Sequence Information
- Coding Sequence
- atgttcaaatcgATATATTGCGGCACAAGCTGTAAGGTAAATCAAGGCGTCAAGAACAACGAGCTACCTCTGCTGGGGCAACATATGATGCCTCGTgttatgtacgcgcgcacgcaagGTGCACGCTGCACAGCAGCCAGCATCTTCTCAGCCAGTTTCGTTCAAGTAAATCTACACGAAATGTACCCaaagagcagcagcgtTGCAGGTGGATTATGTTATAATGACAAAAGACTAGCAAGCGAACTTGAGTTCACTACCTATGAACATTCATTTCTCGGAAAAATCTATCCTCCATTACCAGTTCACGGCTTCGAAGTCGAAGATAACTCAAGCGGAGCCGCTGCTCGCCACGAGCACGTTCTCTCGCACACAGACGCTGCGCGAAGCCCCCCCAAAGCACAGCAGTCATTTTGGCTATCGATGGTCCACGCGCGCATGTATACACGCGATCGGTACGGGTGCGAGTATATGCAGTCCTGTGTACGGTCCTGGTACGcgagccgcgcaacgctgaaaacagctcgggaacagaaaacagcgaacacaAGCCTTGGACCATGCCGCACGTGCACAGCCTATGCAGAAGGAGGAAGTACAAGGTTCATAGTGGCTGCTGATGCTCTTTCTGTTTATATGAGGGCGAATTGCTCTTCGATGCCTAattacttatgtgacgaTTGTGGAACGAAATTCGGAAGTAAATGGCATTTACTTTTGCACAAAACTGCAGTCCATGAAGTTCacagagatttcgcatgcgataaatgtgagaagaaatttggacataagtcagatttgttgaaacatcaaaagacagtacacgaaggtcgaaaagattacccttgcgacaattgcgagaagaaatttggggaacgaggaaatttgatcaaacatcaaaatacatttcatgaaggtcgcaaagattatgcgtgCGAGaactgcgagaaaaaatttggaaattccAGCAATATGAGAAGACACCAAAATATAGTCCACGATAATCGccgagatttcgcatgtgacaagtgtaaaaagaaatttgcacaaaaatgGTATTTGCTCGTCCACCAacggacagtacacgaaaatcGCAGAAATTATGCTTGTGactattgtgaaaaaaaatttggacacaaacaGCATTGGCTTGACCACCAAatgacaatacacgaaggtcgcaaagattttgcatgcaacaattgcgaaaaaaaatttggaaataaatcaaatttgttgaaacacCAAAGGATAATACACGAAGGCCGCATAGACTACGTATGTGGCgagtgcggaaaaaaattcggacttgaatgtaatttactcacccaccaaaagacaatccatgaaggtcggaaagattttgcatgcgacaagtgcgaaaagaaatatggacaaaaatcggatttgttaaagcaccaaaggatagtacacgagggtcgcaaagattatgcatgcgataagtgtgagaagaaatttggacgaaaatcaactttacttttGCACcgaaggacagtacacgaaggtcggaaagatttcgcatgcaacatGTGCGAGAAAACATTCGGacataaatgtaatttattcgcccaccaaaagacagtccacgaaggtcgcagagaatATGCTTGTGATGAGTGCatgaagaaattcggacaaagaGTGCATTTGCTCGtccaccaaagaacagtacacgaagatcggaaagattacgtttgcgacaaatgcgaaaagaaGCACGTCACGTATATGCCCGAAGAAAATCTCAACAAGCCATGCTCGCTCGTGAGAAAGCAATTTTGCCGAGGTGAAGATGCAGCCGATGAGaaggcgagagagaggaagagaactTGGGAGTCGAGAAAGAGATCATGGGCGTATAGATGGACACTTCGTAAATGCCAgtcgctgctactactgctgctgcaaaaaaaagacgtCTTGCATGGTGGTGGTATCGATCAGGATTCCAGCTTCATCGCAGAAATGGCGAGGAACGCAGTCGGAACTGTTCTCGCAGTTTATTCAACGCACTGCAAGAAAATTTCAGGAAACACACCTGTGCGAGAAGCGCAGCATCTGAGTTCCTGTATTTTCGGAGGTCCTCTTGTCAGCATttCTCGcacgcataatctttgcgaccttcatgaaatGCTGTGCACGTGCGGCATGGTCCAAGGCTCTAGCGTCGTGCAGCGAACGCACTTAGCCAGGAGTGCACGAGCGTGTTTCAAACTAGCCTTTACACGTctttccgatggtagtatcagattttccgaaatatccaattttcaccgagaaaatcgccatcaaacattgagggctacatatgtcgaaaaattcagtacggaaaaaAGCCTTGGACCATGCCGCACGTGCACAGCCTATGCAGAAGGAGGAAGTACAAGGTTCATAGTGGCTGCTGATGCTCTTTCTGTTTATATGAGGGCGAATTGCTCTTCGATGCCTAattacttatgtgacgaTTGTGGAACGAAATTCGGAAGTAAATGGCATTTACTTTTGCACAAAACTGCAGTCCATGAAGTTCacagagatttcgcatgcgataaatgtgagaagaaatttggacataagtcagatttgttgaaacatcaaaagacagtacacgaaggtcgaaaagattacccttgcgacaattgcgagaagaaatttggggaacgaggaaatttgatcaaacatcaaaatacatttcatgaaggtcgcaaagattatgcgtgCGAGaactgcgagaaaaaatttggaaattccAGCAATATGAGAAGACACCAAAATATAGTCCACGATAATCGccgagatttcgcatgtgacaagtgtaaaaagaaatttgcacaaaaatgGTATTTGCTCGTCCACCAacggacagtacacgaaaatcGCAGAAATTATGCTTGTGactattgtgaaaaaaaatttggacacaaacaGCATTGGCTTGACCACCAAatgacaatacacgaaggtcgcaaagattttgcatgcaacaattgcgaaaaaaaatttggaaataaatcaaatttgttgaaacacCAAAGGATAATACACGAAGGCCGCATAGACTACGTATGTGGCgagtgcggaaaaaaattcggacttgaatgtaatttactcacccaccaaaagacaatccatgaaggtcggaaagattttgcatgcgacaagtgcgaaaagaaatatggacaaaaatcggatttgttaaagcaccaaaggatagtacacgagggtcgcaaagattatgcatgcgataagtgtgagaagaaatttggacgaaaatcaactttacttttGCACcgaaggacagtacacgaaggtcggaaagatttcgcatgcaacatGTGCGAGAAAACATTCGGacataaatgtaatttattcgcccaccaaaagacagtccacgaaggtcgcagagaatATGCTTGTGATGAGTGCatgaagaaattcggacaaagaGTGCATTTGCTCGtccaccaaagaacagtacacgaagatcggaaagattacgtttgcgacaaatgcgaaaagaaCAATTTTGCCGAGGTGAAGATGCAGCCGATGAGaaggcgagagagaggaagagaactTGGGAGTCGAGAAAGAGATCATGGGCGTATAGATGGACACTTCGTAAATcgcGCCGCGACTGCGGCAATGGCAAAAACACACGCGAAAAAGCCACCACACGACGCTAAGAGCCGTCGCGCACGACGATTTCGTCTTCACATTATATCCTGTACGTTAAAACACAGCTGGTCGGTGCCTGTCTTATCGATTTGGAGAAGGCCTTCGACTCAGTTTGGAACGCGGGCTTACTATTTATATACTATCAAAAAACAACTACCCCAGAGATCTCATACGAATTATCTGGAGCATGTGTTATCGAACCGCGACTTCGTGATCTGGAACGGCAGCATCACATCAGACTTCACATTCAACATAACGGAGGGCTTGATGCAAGGCACAGTCAACTCACCTATACTATTCAACATTTTCACTCACGGAGTATGCAATCTGGCAGGCCTGAATCAGGGTGATGGCACGTACTCTCTGGCTTTTGCCGATGACTACGTCCTGCTGGTAGCCGATAAGGACCCCCAAATTATCGAACGCAAAATACAGCACTTAGCCACAGAGATAAATAAGTACTACACGAACTGGAATCTTAAAATTAACACCCAGATAAGTGTGAACTTATAA
- Protein Sequence
- MFKSIYCGTSCKVNQGVKNNELPLLGQHMMPRVMYARTQGARCTAASIFSASFVQVNLHEMYPKSSSVAGGLCYNDKRLASELEFTTYEHSFLGKIYPPLPVHGFEVEDNSSGAAARHEHVLSHTDAARSPPKAQQSFWLSMVHARMYTRDRYGCEYMQSCVRSWYASRATLKTAREQKTANTSLGPCRTCTAYAEGGSTRFIVAADALSVYMRANCSSMPNYLCDDCGTKFGSKWHLLLHKTAVHEVHRDFACDKCEKKFGHKSDLLKHQKTVHEGRKDYPCDNCEKKFGERGNLIKHQNTFHEGRKDYACENCEKKFGNSSNMRRHQNIVHDNRRDFACDKCKKKFAQKWYLLVHQRTVHENRRNYACDYCEKKFGHKQHWLDHQMTIHEGRKDFACNNCEKKFGNKSNLLKHQRIIHEGRIDYVCGECGKKFGLECNLLTHQKTIHEGRKDFACDKCEKKYGQKSDLLKHQRIVHEGRKDYACDKCEKKFGRKSTLLLHRRTVHEGRKDFACNMCEKTFGHKCNLFAHQKTVHEGRREYACDECMKKFGQRVHLLVHQRTVHEDRKDYVCDKCEKKHVTYMPEENLNKPCSLVRKQFCRGEDAADEKARERKRTWESRKRSWAYRWTLRKCQSLLLLLLQKKDVLHGGGIDQDSSFIAEMARNAVGTVLAVYSTHCKKISGNTPVREAQHLSSCIFGGPLVSISRTHNLCDLHEMLCTCGMVQGSSVVQRTHLARSARACFKLAFTRLSDGSIRFSEISNFHRENRHQTLRATYVEKFSTEKSLGPCRTCTAYAEGGSTRFIVAADALSVYMRANCSSMPNYLCDDCGTKFGSKWHLLLHKTAVHEVHRDFACDKCEKKFGHKSDLLKHQKTVHEGRKDYPCDNCEKKFGERGNLIKHQNTFHEGRKDYACENCEKKFGNSSNMRRHQNIVHDNRRDFACDKCKKKFAQKWYLLVHQRTVHENRRNYACDYCEKKFGHKQHWLDHQMTIHEGRKDFACNNCEKKFGNKSNLLKHQRIIHEGRIDYVCGECGKKFGLECNLLTHQKTIHEGRKDFACDKCEKKYGQKSDLLKHQRIVHEGRKDYACDKCEKKFGRKSTLLLHRRTVHEGRKDFACNMCEKTFGHKCNLFAHQKTVHEGRREYACDECMKKFGQRVHLLVHQRTVHEDRKDYVCDKCEKNNFAEVKMQPMRRRERGRELGSRERDHGRIDGHFVNRAATAAMAKTHAKKPPHDAKSRRARRFRLHIISCTLKHSWSVPVLSIWRRPSTQFGTRAYYLYTIKKQLPQRSHTNYLEHVLSNRDFVIWNGSITSDFTFNITEGLMQGTVNSPILFNIFTHGVCNLAGLNQGDGTYSLAFADDYVLLVADKDPQIIERKIQHLATEINKYYTNWNLKINTQISVNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -