Tbra006310.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001216.1:124575-127716[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.22 9.2 6.9 0.4 1 23 30 53 30 53 0.88 2 29 0.00049 0.021 15.2 2.3 1 23 59 82 59 82 0.96 3 29 5.3 2.3e+02 2.5 0.1 5 21 92 108 91 109 0.91 4 29 0.0025 0.1 13.0 1.1 1 23 117 140 117 140 0.95 5 29 4.6e-05 0.0019 18.4 1.0 1 23 146 169 146 169 0.94 6 29 0.00052 0.022 15.1 0.8 1 23 175 198 175 198 0.96 7 29 4.1e-06 0.00018 21.7 0.6 1 23 204 227 204 227 0.97 8 29 0.0017 0.073 13.5 2.3 1 23 233 256 233 256 0.96 9 29 0.00012 0.0051 17.1 1.7 1 23 262 285 262 285 0.97 10 29 0.0036 0.15 12.5 8.8 1 23 291 314 291 314 0.98 11 29 9.2e-05 0.0039 17.5 0.3 1 23 320 343 320 343 0.98 12 29 0.0004 0.017 15.5 5.7 1 23 349 372 349 372 0.98 13 29 4.6e-06 0.0002 21.6 1.4 1 23 378 401 378 401 0.98 14 29 2.2e-07 9.3e-06 25.7 1.9 1 23 407 430 407 430 0.96 15 29 0.0078 0.33 11.4 1.1 1 23 436 459 436 459 0.97 16 29 9.9e-05 0.0042 17.4 2.0 1 23 465 488 465 488 0.98 17 29 3.5e-06 0.00015 21.9 2.3 1 23 494 517 494 517 0.98 18 29 3.6e-05 0.0015 18.8 1.9 1 23 523 546 523 546 0.97 19 29 2.4e-05 0.001 19.3 2.7 3 23 554 575 552 575 0.96 20 29 7e-06 0.0003 21.0 1.2 1 23 581 604 581 604 0.97 21 29 8.1e-06 0.00034 20.8 3.0 1 23 610 633 610 633 0.98 22 29 0.00021 0.0091 16.3 1.7 1 23 639 662 639 662 0.97 23 29 1.3e-05 0.00055 20.2 2.5 1 23 668 691 668 691 0.98 24 29 0.00039 0.017 15.5 3.3 1 23 697 720 697 720 0.98 25 29 0.00029 0.012 15.9 1.3 1 23 726 749 726 749 0.97 26 29 9.9e-05 0.0042 17.4 2.0 1 23 755 778 755 778 0.98 27 29 0.00015 0.0065 16.8 0.6 1 23 784 807 784 807 0.98 28 29 2.8e-05 0.0012 19.1 0.7 1 23 813 836 813 836 0.97 29 29 1e-05 0.00044 20.5 3.5 1 23 842 865 842 865 0.97
Sequence Information
- Coding Sequence
- atggataaaagtcaGAAGAAATCGGAAGAAATTGTCTCAAtagataattcaagtgaacacgACGTTGTTGCTTCAAACgacaaaaagtacatttgtgatatttgtcaggagatatttacaataaaatcaagCATGATATTTCACCGATTCACTGTTCAcactgaacaaaaaaaatacgcatgtgtcaagtgcgaaaagaaatttgtgaatcGATCGTGTTTGATTATGCACCAAAAACTAATGCATGGAAATCGCGAAGATTTCATGATCAAAAAGTGCAAtcaaaacattgaaaataaatcaactttactcgaGCACCAAAAACTATCCAACGAAGTTTTCAccaattacttatgtgaaatgtgcgccaagagatttgatACTATACATAGTTTGCTTTCGCACATGACGACGgtccacgaaagtcgcaaagattacccatgtgataagtgcgagaagaaatttacacgtAAAGCGagtttgctctaccaccaaacGTTAGTACACGAAGTTCGGAAATAtcacacatgcgacaagtgtgagaagataTTTGTGACTCAAGGCGTTTTGAATACGCACCGAGAAATGGttcatgaaagtcaaaaaaattattcatgcgAAGATTGCGagaaaacatttgaaaatgaatccAATTTACTAGAACACAGAAAagtattccacgaagtttccagaaattatttatgtgaaatgtgtttgaaacaatttaatacTACacatagtttgctcttgcacatgaagacagtccacgaaggtcgcaaagactacaaATGTGGTAATTGTGAGAAAAAGTTCGGAAAAAGATCGCATTTGCTCGTTCACCAAggaacagttcatgaaggtcgcaaagattacacatgcgacaagtgcgagaagaaatttggaaaacgATGCCATTTGATTAGACACCATAAAAcaattcacgaaggtcgtaaagattacgtatgcgacaattgcgaaatgaaatttggggaacgaggcaatttgataaaacatcaaaaaactatccacgaaggtcgcaaagattacgtatgtgacaagtgcgaaaagaaatttggacacaaaaaCCATTTgcgtttacataaaaaaacagtccacaaAAGTtacaaagattacgtatgcgacaagtgcaagaaaaagtttggacaaatatcaaatttgttgaagcaccaaaaaacagtccacgacggttgcaaagatttcgcatgcgacaaatgcgaaaagaaatttagaagaaaatcgaatttgctcaaacaccaaaggatagtccacgaaggccgcaaagattttgtatgcgacaagtgcgagaaaaaattcggagcAAGATCGTATTTGCTTTtccatcaaaggacagtccacgaaggttgcaGAGACTACGAATGCGATAATTGCGAAACGAAATGTGggagtaaatcagatttgttgaagcaccaaaggacagtccacgaaggtcgcaaagactacaaATGTGGTAATTgtgagaaaaagtttggaaaTAGATCGCATTTGCTCGTTCACCAAcgaacagttcatgaaggtcgcaaagattacttttgtgacaaatgcgagaagaaatttggagaaaagtcGAAATTGATtcgacaccaaaagacagtccacgaaggtcgcagagatttggcttgtgacaagtgcgagaaaaatttcAGACGAAAGCAGCATTTGCTTcttcaccaaaggacagtccacgaaggtcgcatagactacgcatgcgacaagtgcaagaaaaattttgaacaaatatcaaatttgttgaagcatcaaaaaacagtccacgaaggtcgcaaagactacaaATGTGATAATTGTGAGAAAAAGTTCGGAAAAAGATCGCATTTGCTCGTTCACCAAcgaacagttcatgaaggtcgcagagactacgcatgcgataattgcgaAACGAAATGTGggagtaaatcagatttgttgaagcaccaaaggacagttcatgaaggtcgcagagactataaatgtgataattgcgagaaaaaattcgtagcAAGATCGCATTTGCTTtcccaccaaaggacagtccacgaaggccgcaaagattacacatgcgacaattgcaaaaagaaatttggacaaaaacagtATTTGCTCATCCATCACatgacagtccatgaaggtcacaaatatttcgcatgcgacaagtgtgagaaaaaatttggacaaagaTCGAATTTGCTTTTCCATCAAAGGActgtccacgaaggtcgcaaagactacgaaTGCGATAATTGCGAAACGAAATGTGggagtaaatcagatttgttgaagcaccaaaggacagtccacgagggtcgcaaagattacgtatgcgacaagtgcgaaaaacaatttggacaaaaatatcaagtggtcatacaccaaaagacggttcacgaaggtcgtaaagattacgcatgtgacaaatgccaAAAGAAATTCGGGGAACGAGGCACTTTGATCAaacaccaaagaacagtccacgaaggtcgcaaggattatgTATGCGACggatgcgagaaaaaattcggacataaatcgcatttgctcagacaccaaacGACAGTACACGAATGTCGGAAAGATTATACAAGTGACAAGTGCTAG
- Protein Sequence
- MDKSQKKSEEIVSIDNSSEHDVVASNDKKYICDICQEIFTIKSSMIFHRFTVHTEQKKYACVKCEKKFVNRSCLIMHQKLMHGNREDFMIKKCNQNIENKSTLLEHQKLSNEVFTNYLCEMCAKRFDTIHSLLSHMTTVHESRKDYPCDKCEKKFTRKASLLYHQTLVHEVRKYHTCDKCEKIFVTQGVLNTHREMVHESQKNYSCEDCEKTFENESNLLEHRKVFHEVSRNYLCEMCLKQFNTTHSLLLHMKTVHEGRKDYKCGNCEKKFGKRSHLLVHQGTVHEGRKDYTCDKCEKKFGKRCHLIRHHKTIHEGRKDYVCDNCEMKFGERGNLIKHQKTIHEGRKDYVCDKCEKKFGHKNHLRLHKKTVHKSYKDYVCDKCKKKFGQISNLLKHQKTVHDGCKDFACDKCEKKFRRKSNLLKHQRIVHEGRKDFVCDKCEKKFGARSYLLFHQRTVHEGCRDYECDNCETKCGSKSDLLKHQRTVHEGRKDYKCGNCEKKFGNRSHLLVHQRTVHEGRKDYFCDKCEKKFGEKSKLIRHQKTVHEGRRDLACDKCEKNFRRKQHLLLHQRTVHEGRIDYACDKCKKNFEQISNLLKHQKTVHEGRKDYKCDNCEKKFGKRSHLLVHQRTVHEGRRDYACDNCETKCGSKSDLLKHQRTVHEGRRDYKCDNCEKKFVARSHLLSHQRTVHEGRKDYTCDNCKKKFGQKQYLLIHHMTVHEGHKYFACDKCEKKFGQRSNLLFHQRTVHEGRKDYECDNCETKCGSKSDLLKHQRTVHEGRKDYVCDKCEKQFGQKYQVVIHQKTVHEGRKDYACDKCQKKFGERGTLIKHQRTVHEGRKDYVCDGCEKKFGHKSHLLRHQTTVHECRKDYTSDKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -