Tbra016712.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000458.1:221451-241776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00068 0.029 14.8 0.3 1 23 15 38 15 38 0.96 2 27 0.00018 0.0079 16.5 0.4 1 23 44 67 44 67 0.97 3 27 2e-05 0.00085 19.6 2.9 1 23 73 96 73 96 0.98 4 27 1.1e-06 4.7e-05 23.5 0.7 1 23 105 128 105 128 0.97 5 27 0.00033 0.014 15.7 0.5 1 23 134 157 134 157 0.96 6 27 8.5e-06 0.00036 20.7 1.4 1 23 163 186 163 186 0.97 7 27 0.00059 0.025 14.9 1.0 1 23 192 215 192 215 0.96 8 27 1.4e-06 5.7e-05 23.2 1.9 1 23 221 244 221 244 0.97 9 27 2.8e-05 0.0012 19.1 0.4 1 23 250 273 250 273 0.97 10 27 0.0021 0.09 13.2 0.9 1 23 279 302 279 302 0.97 11 27 3.1e-05 0.0013 19.0 2.1 1 23 308 331 308 331 0.94 12 27 8.5e-06 0.00036 20.7 1.4 1 23 337 360 337 360 0.97 13 27 0.036 1.5 9.3 4.8 1 22 379 400 379 400 0.93 14 27 3.5e-06 0.00015 21.9 0.6 1 23 408 431 408 431 0.97 15 27 0.0047 0.2 12.1 3.6 1 23 437 460 437 460 0.96 16 27 3.5e-06 0.00015 22.0 0.4 1 23 466 489 466 489 0.97 17 27 6.6e-05 0.0028 17.9 1.8 1 23 495 518 495 518 0.97 18 27 5.7e-05 0.0024 18.1 0.3 1 23 524 547 524 547 0.96 19 27 3e-05 0.0013 19.0 0.8 1 23 553 576 553 576 0.97 20 27 1.6e-06 6.9e-05 23.0 0.7 1 23 582 605 582 605 0.97 21 27 0.0039 0.17 12.4 3.8 1 23 611 634 611 634 0.97 22 27 2.4e-05 0.001 19.3 0.6 1 23 640 663 640 663 0.97 23 27 2.6e-06 0.00011 22.4 1.1 1 23 669 692 669 692 0.97 24 27 0.00014 0.0061 16.9 2.4 1 23 698 721 698 721 0.98 25 27 0.0043 0.18 12.2 5.6 1 23 727 750 727 750 0.97 26 27 1e-05 0.00044 20.5 0.5 1 23 756 779 756 779 0.97 27 27 0.017 0.72 10.4 5.0 1 23 785 808 785 808 0.96
Sequence Information
- Coding Sequence
- atgtTCAAGCACCAacagacagtacacgaaggtcgaaaagattttgcatgtgacagtTGTGAGAAGATATATGGACGAAAATCAAGTTTACTTtcgcaccaaaaaatagtacacgaaggtcgcaaggattatACCTGTGACaactgcgagaagaaatttggagaaaaacaGAATTTGCTCGTACACATAAAGttagtacatgaaggtcgcaaagatttcgaatgcgacaaatgcaagaaaaaattcagcAGCAAACAGTATCTGCTTCTTCATCAGAAGACGATACACGAAGtccaTGAGATTCGCAAAGACTATGCATGCGACATTTGCGAGAAAATATTCGGAcataaatcgaatttgctcagacaccaaagggtagttcacgagggtcgcaaaggttacgcatgcgacaggtgcgaacaaaaatttacagaaaaatcgagtttactCACCCATCTGAAGATAgttcatgagggtcgcaaagattacgcatgtggcaaatgtgaaaagaaatttgggaccCGAAGCAATTTtatcaaacaccaaaaaacagtccacgaaggtcggaaagatttcgcatgcgacaaatgcgagaaaaaatttgtaagtaAGTCCGATTTGCTCTTTCACCTGAAGACAGtgcatgaaggtcgaaaagattacgcatgcgatgtttgcgagaagaagttcggacataaatcaaatttgttaaAGCACCAGAGGACAGTACACCAAAGTCGCAAAGACTATGCATGCGAcatttgcgagaaaaaattcggactaaaatcgagtttgctcagccaccaaaggacagttcacgagggtcgcaaagattatgcatgcgaccgATGCGAACagaaattaacaaaaaaatcaagtttactcACCCATCTGaagacagttcatgagggtcggaaagattttgcatgcgataaatgccagaaaaaatttggaagaaagTCCGATTTGTTGAAACACCAAAAATttgtccacgagggtcgcaaagattacgcatgtggcaaatgtgaaaagaaatttgggaccCGAAGCAATTTtatcaaacaccaaaaaacagtccacgaaggtcagaaagattttgcatgtgacggaacagtccatgaaggtcgaaaaggTTTCGAATGCAAcgaatgcgagaagaagtttggacataaacatcatttacttttccaccaaaagacagtccccGAGggacgcaaagattacgcatgcgacatgTGCGAGAAGGAgttcggacaaaaatcagatttgtttcggcaccaaaagacagtacacgaaggtcaaaaagatttcgcgtgtgacaaatgcgagaaaaaatttggacgaaaatcgactttgctctgccatcaaaagacagtccatgaagctcgcaaagactacgcgtGCAATAAATGTgcgaagaaatttggggatcaaggcaatttgatcaaacaccaaagaacagtccacgaatgtcgcaaagattacgcatgcgataagtgcgagaagaaatttggacaaaaaccgcatttgctcagacaccaaacgacagttcatgaaggttgcaaagattacgcttgtgacaaatgcgagaaaaaatttggacaaaaatcgaactGGCTTGTGCACCAAAGagcagtacacgaaggttgcaaagattttgcatgcgacatgtgcgagaagaagttcggaaaaaaatcgtcgttgcttttgcaccaaagaacagtacacgagggtcgcaaagattacgcatgcgacatgtgcgagaagaagttcggacaaaaatcagatttgttaaagcaccagaggacagtacacgaaggtcgaaaaggtTTCGAATGCAAcgaatgcgagaagaagtttggacgtaaacattatttacttttccaccaaaagacagtccacgagggtcgcaaagattacgcttgtgacaaatgcgagaaaaaatttggacaaaaatcgaactGGCTTGTGCACCAAAAGACcgtacacgagggtcgcaaagattacgcatgcgacatgtgcgagaagaagttcggacaaaaatcagatttgtttcggcaccaaaagacagtccacgaaggtcaaaaagatttctcatgtgacaaatgcgagaaaaaatttggacaaaaaattcatttgttgAACCATGaaagaacagtccatgaaggtcgaaaaggTTTCGAATGCAAcgaatgcgagaagaagtttggacgTAAACATCATTTACttttccaccaaaagacagtccacgagggtcgcaaagattacgcttgtgacaaatgcgagaaaaaatttggacaaaaatcgaactGGCTTgtgcaccaaagaacagtacacaaaggttgcaaagattttgcatgcgacatgtgcgagaagaagtttggacgTAAACATCATTTACTTTTCCACCAAAAGACCGTACAcgaggtcgcaaagattacgcatgcgacatgtgcgagaagaagttcggacaaaaatcagatttgtttcGGCACCAAAAGaaagtacacgaaggtcgaaaggATTACGAATGAgacaattTGCACAACACAATGTGCAACTACTACAGGGCTCTGCCGAGTTGAACCAAAGTCGCCCCGACAGATGCCGCTAAGCGTCGCACTCGACAGTCGCGCGCGAAATCGCCTATATGCTCGATCGAGTCTCACTCTCTCGATCAGTTTGCGAATTTTGCCGCACTGCCCCCCCCGAGCGCGCCACCAACTTGTACTATACAACTATTCGGAGTTCGGCCCTCATCCGCTGCATATAGGTACTGTTCAAGTGCCCCCCAGTGCTCGTGCACTCACACCGCGCCGGCCTGCGATACCTACGCGAATATCCAGCGTCAGTTCTCTACGGTATCGGCGGTGTTGGCACAGCTCTATCTGCGATCGTGCGGCGCTGCGCGAAAAGTTTGCAGAcggcgcagcggcagcggcagtgtCTCATGTGCGAAGGTACGCACGCGTACACGTTTTTTTCACGCCACTAGCTGCCGTATGCATagtgagagagagaaaattggCCGACGATTTGGCTCGGGCTATAGTAGCCGTAGAAATTGCCTCGTCGGCTCCGGCATTTTCACGACTGGAGTATATGACTACAATAAGTTCGAGCTGTTCGAGCAtacaatga
- Protein Sequence
- MFKHQQTVHEGRKDFACDSCEKIYGRKSSLLSHQKIVHEGRKDYTCDNCEKKFGEKQNLLVHIKLVHEGRKDFECDKCKKKFSSKQYLLLHQKTIHEVHEIRKDYACDICEKIFGHKSNLLRHQRVVHEGRKGYACDRCEQKFTEKSSLLTHLKIVHEGRKDYACGKCEKKFGTRSNFIKHQKTVHEGRKDFACDKCEKKFVSKSDLLFHLKTVHEGRKDYACDVCEKKFGHKSNLLKHQRTVHQSRKDYACDICEKKFGLKSSLLSHQRTVHEGRKDYACDRCEQKLTKKSSLLTHLKTVHEGRKDFACDKCQKKFGRKSDLLKHQKFVHEGRKDYACGKCEKKFGTRSNFIKHQKTVHEGQKDFACDGTVHEGRKGFECNECEKKFGHKHHLLFHQKTVPEGRKDYACDMCEKEFGQKSDLFRHQKTVHEGQKDFACDKCEKKFGRKSTLLCHQKTVHEARKDYACNKCAKKFGDQGNLIKHQRTVHECRKDYACDKCEKKFGQKPHLLRHQTTVHEGCKDYACDKCEKKFGQKSNWLVHQRAVHEGCKDFACDMCEKKFGKKSSLLLHQRTVHEGRKDYACDMCEKKFGQKSDLLKHQRTVHEGRKGFECNECEKKFGRKHYLLFHQKTVHEGRKDYACDKCEKKFGQKSNWLVHQKTVHEGRKDYACDMCEKKFGQKSDLFRHQKTVHEGQKDFSCDKCEKKFGQKIHLLNHERTVHEGRKGFECNECEKKFGRKHHLLFHQKTVHEGRKDYACDKCEKKFGQKSNWLVHQRTVHKGCKDFACDMCEKKFGRKHHLLFHQKTVHEVAKITHATCARRSSDKNQICFGTKRKYTKVERITNETICTTQCATTTGLCRVEPKSPRQMPLSVALDSRARNRLYARSSLTLSISLRILPHCPPRARHQLVLYNYSEFGPHPLHIGTVQVPPSARALTPRRPAIPTRISSVSSLRYRRCWHSSICDRAALREKFADGAAAAAVSHVRRYARVHVFFTPLAAVCIVRERKLADDLARAIVAVEIASSAPAFSRLEYMTTISSSCSSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -